Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002528

Physical Location & Seq

Genomic Coordinates Forward (+)

83161052 .. 83162510

Gene Structure 1459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35187

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGATGGAGCTATGTGTCATGCTTTTGGAATGTTGCAGTCAGGAGAGAACCACCAGAATCCACTATTCTCTTGGGACAGCGGTTCTGCATGATCAACAGAATCCACCAGGAAAATTTTGAGAAATGTTTTGTCCAGCAGTATTCAATGATTCACCGGCTTGAAACAAACAAGCTACGTAATGTAGCTAAGTTTTTTGCGCATTTACTCGGAACAGATGCCCTTCCGTGGCATTGCTTAGCCTATATACGGTTAACTGAAGAGGACACCACTTCTTCTTCTCGTATTTTTATCAAGACCCTTTTCCAGGAATTGTCAGAGCATCTTGGTATCCGTCTGCTTAATGAGCGGTTGACTGATCCTGCAATGCAAGACTCTTTCAAATCTATTTTCCCAAGGGATAATCCCAAGAACACCCGATTTGCTATCAACTTTTTCACATCCATTGGGCTTGCCGGCATAACTGAGAACCTGCGTGAGTATGAAAATACAAGGACAGAATATGATTTTCTGGAAAACGGGGATTGCAGTGCACTGATCAATCCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071006 GO:0071012 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

183

Amino Acids

21.59

Weight (kDa)

6.52

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MA3	PF02847	21 - 76	4.8e-12	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80930
fragaria_vesca	FvH4_3g01450 FvH4_3g43230 FvH4_3g43240 FvH4_3g43240
malus_domestica	MD03G1023500.v1.1 MD11G1028600.v1.1
prunus_persica	Prupe.6G022700_v2.0.a1 Prupe.6G022700_v2.0.a1
pyrus_communis	pycom03g02010 pycom11g02210
rosa_chinensis	RchiOBHm_Chr5g0002291 RchiOBHm_Chr5g0077281 RchiOBHm_Chr5g0077291
rosa_laevigata	RLG00000031014 RLG00000036681 RLG00000036682
rosa_multiflora	Rmu_co8446135.1_g000001 Rmu_sc0000433.1_g000042 Rmu_sc0001492.1_g000008 Rmu_sc0005576.1_g000001 Rmu_sc0006137.1_g000009 Rmu_sc0008383.1_g000001 Rmu_sc0013155.1_g000012 Rmu_ssc0000410.1_g000040
rosa_roxburghii	Rroxscaffold_1G00004680 Rroxscaffold_1G00073650
rosa_rugosa	Rorug04G0394900 Rorug05G0453500
rosa_samantha	Rh5AG017700 Rh5AG508400 Rh5AG508500 Rh5BG020300 Rh5BG529600 Rh5CG019100 Rh5CG019400 Rh5CG554100 Rh5DG018300 Rh5DG542200
rosa_wichuraiana	Rw5G046900 Rw5G046910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	480
AccBSI	CCGCTC	1 cut(s)	349
AciI	CCGC	2 cut(s)	82, 349
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	279
AfiI	CCNNNNNNNGG	3 cut(s)	228, 249, 307
AgsI	TTSAA	3 cut(s)	147, 164, 382
AjnI	CCWGG	2 cut(s)	108, 306
AluBI	AGCT	3 cut(s)	12, 175, 188
AluI	AGCT	3 cut(s)	12, 175, 188
Alw21I	GWGCWC	1 cut(s)	535
Alw44I	GTGCAC	1 cut(s)	531
AlwI	GGATC	1 cut(s)	353
ApaLI	GTGCAC	1 cut(s)	531
ApoI	RAATTY	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	535
BciT130I	CCWGG	2 cut(s)	110, 308
BciVI	GTATCC	1 cut(s)	341
BclI	TGATCA	2 cut(s)	93, 537
BfaI	CTAG	1 cut(s)	550
BfuAI	ACCTGC	1 cut(s)	480
BfuI	GTATCC	1 cut(s)	341
BlpI	GCTNAGC	1 cut(s)	238
Bme1390I	CCNGG	2 cut(s)	110, 308
BmrFI	CCNGG	2 cut(s)	110, 308
BmsI	GCATC	2 cut(s)	208, 331
Bpu1102I	GCTNAGC	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	227, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 249, 307
Bse118I	RCCGGY	2 cut(s)	156, 455
Bse3DI	GCAATG	2 cut(s)	232, 372
BseBI	CCWGG	2 cut(s)	110, 308
BseDI	CCNNGG	2 cut(s)	227, 395
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	3 cut(s)	228, 249, 307
BseMI	GCAATG	2 cut(s)	232, 372
BseMII	CTCAG	1 cut(s)	456
BseSI	GKGCMC	1 cut(s)	535
BsiHKAI	GWGCWC	1 cut(s)	535
BsiSI	CCGG	2 cut(s)	157, 456
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	3 cut(s)	228, 249, 307
BsmFI	GGGAC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	3 cut(s)	93, 358, 537
Bsp1720I	GCTNAGC	1 cut(s)	238
BspACI	CCGC	2 cut(s)	82, 349
BspCNI	CTCAG	1 cut(s)	457
BspMI	ACCTGC	1 cut(s)	480
BspPI	GGATC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	349
BsrDI	GCAATG	2 cut(s)	232, 372
BsrFI	RCCGGY	2 cut(s)	156, 455
BssAI	RCCGGY	2 cut(s)	156, 455
BssECI	CCNNGG	2 cut(s)	227, 395
BssMI	GATC	3 cut(s)	93, 358, 537
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	2 cut(s)	110, 308
Bst4CI	ACNGT	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	453, 457
BstDEI	CTNAG	3 cut(s)	189, 238, 465
BstDSI	CCRYGG	1 cut(s)	227
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	96, 361, 540
BstMBI	GATC	3 cut(s)	93, 358, 537
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNI	CCWGG	2 cut(s)	110, 308
BstSCI	CCNGG	2 cut(s)	108, 306
BstSLI	GKGCMC	1 cut(s)	535
BstSNI	TACGTA	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	341
BtgI	CCRYGG	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	440
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	2 cut(s)	533, 535
BveI	ACCTGC	1 cut(s)	480
Cac8I	GCNNGC	2 cut(s)	453, 457
CfoI	GCGC	1 cut(s)	202
Cfr10I	RCCGGY	2 cut(s)	156, 455
CviAII	CATG	2 cut(s)	21, 91
CviJI	RGCY	6 cut(s)	12, 160, 175, 188, 242, 451
CviKI_1	RGCY	6 cut(s)	12, 160, 175, 188, 242, 451
DdeI	CTNAG	3 cut(s)	189, 238, 465
DpnI	GATC	3 cut(s)	95, 360, 539
DpnII	GATC	3 cut(s)	93, 358, 537
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco105I	TACGTA	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	108, 306
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	2 cut(s)	24, 94
FaiI	YATR	8 cut(s)	15, 22, 92, 246, 248, 461, 483, 504
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	2 cut(s)	20, 90
FbaI	TGATCA	2 cut(s)	93, 537
FokI	GGATG	1 cut(s)	427
FspBI	CTAG	1 cut(s)	550
FspI	TGCGCA	1 cut(s)	201
GlaI	GCGC	1 cut(s)	201
HapII	CCGG	2 cut(s)	157, 456
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	2 cut(s)	24, 94
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	2 cut(s)	255, 354
HindII	GTYRAC	2 cut(s)	255, 354
HinfI	GANTC	4 cut(s)	59, 102, 151, 374
HpaI	GTTAAC	1 cut(s)	255
HpaII	CCGG	2 cut(s)	157, 456
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	3 cut(s)	255, 354, 533
Hpy188I	TCNGA	2 cut(s)	212, 319
Hpy188III	TCNNGA	3 cut(s)	43, 295, 512
Hpy8I	GTNNAC	3 cut(s)	255, 354, 533
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	6 cut(s)	38, 90, 365, 370, 528, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	3 cut(s)	189, 238, 465
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	24, 94
HspAI	GCGC	1 cut(s)	200
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
Ksp22I	TGATCA	2 cut(s)	93, 537
KspAI	GTTAAC	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	93, 358, 537
LmnI	GCTCC	1 cut(s)	9
LweI	GCATC	2 cut(s)	208, 331
MaeI	CTAG	1 cut(s)	550
MaeII	ACGT	1 cut(s)	178
MalI	GATC	3 cut(s)	95, 360, 539
MbiI	CCGCTC	1 cut(s)	349
MboI	GATC	3 cut(s)	93, 358, 537
MboII	GAAGA	3 cut(s)	267, 270, 272
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	2 cut(s)	115, 311
MlyI	GAGTC	1 cut(s)	368
MnlI	CCTC	1 cut(s)	256
MroNI	GCCGGC	1 cut(s)	455
MseI	TTAA	2 cut(s)	254, 342
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	2 cut(s)	157, 456
MspR9I	CCNGG	2 cut(s)	110, 308
MvaI	CCWGG	2 cut(s)	110, 308
MwoI	GCNNNNNNNGC	1 cut(s)	346
NaeI	GCCGGC	1 cut(s)	457
NdeII	GATC	3 cut(s)	93, 358, 537
NgoMIV	GCCGGC	1 cut(s)	455
NlaIII	CATG	2 cut(s)	24, 94
NsbI	TGCGCA	1 cut(s)	201
PdiI	GCCGGC	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	59, 102, 151
PfoI	TCCNGGA	1 cut(s)	306
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
Ppu21I	YACGTR	1 cut(s)	179
Psp6I	CCWGG	2 cut(s)	108, 306
PspGI	CCWGG	2 cut(s)	108, 306
SaqAI	TTAA	2 cut(s)	254, 342
Sau3AI	GATC	3 cut(s)	93, 358, 537
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	110, 308
SduI	GDGCHC	1 cut(s)	535
SetI	ASST	5 cut(s)	14, 177, 181, 190, 474
SfaNI	GCATC	2 cut(s)	208, 331
SnaBI	TACGTA	1 cut(s)	179
Sse9I	AATT	2 cut(s)	115, 311
SsiI	CCGC	2 cut(s)	82, 349
SspMI	CTAG	1 cut(s)	550
StyD4I	CCNGG	2 cut(s)	108, 306
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	252
TaiI	ACGT	1 cut(s)	181
TasI	AATT	2 cut(s)	115, 311
TfiI	GAWTC	3 cut(s)	59, 102, 151
Tru1I	TTAA	2 cut(s)	254, 342
Tru9I	TTAA	2 cut(s)	254, 342
TscAI	CASTG	2 cut(s)	535, 540
TspDTI	ATGAA	1 cut(s)	498
TspGWI	ACGGA	2 cut(s)	216, 323
TspRI	CASTG	2 cut(s)	535, 540
VneI	GTGCAC	1 cut(s)	531
XagI	CCTNNNNNAGG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XspI	CTAG	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.