Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8446135.1

Orthogroup ID

OG0002528

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1565

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8446135.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgaaagaggtcgaagataaaagtagcgttgagtatcagcgcttgacatgggatgccctccgaaagagtatcaatgggcttttgaacaaggtcactgctgcaaacattaagaatataattccagaaatttttgcagagaatctcattcgtggaagaggtctcttttgtcaatcctgtttgaagtcacagatggcatatccaggatttacagacgtctttgctggcttggtggctgttgttaacaccaagtttcctgaggttggtgaacttttgttgagaagaatcgtcttgcagcttaagagaggatttaagccgaacgacaagccacaactactagctcctgtcaaatttatcgcgcatcttgtcaacaaacgagtggctcatgagattatagcattggaattgctcactgtgctgctggagaatcctatcgatgatggtgttgaagttgctgttggctttgtcacagagtgtggatcaatactgcagaacctttcacctgaagggctccaaagcatctttgagcgctttggtgtaattcttcatgaaggagaaattgacaaacgagttcggtggatgatcgaaggcttatttgcattacggaaggcaaggtttcaggggcacccagctgttcgtccagaactggaccttgttgagcaagaagaccagttaactcatgatatttctcttcaacaggagataaatccagaaattacccttgatattttcgagcctgatcctgatttcattgagaatgagaagcgctatgaagatgtgaagaaaacaattcttggtcaatactctaaagatgaaggttctgatgcagcttcagatgagcaggaaatgaaaataagagatgagacggagacggagacggagaccaatcttgtgaatcttcgaaggacaatatatctgactatcatgtccggtgtagattttgaggaagcaggtcatcagctccttaagattaagcttgagccaggccaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071006 GO:0071012 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

330

Amino Acids

37.48

Weight (kDa)

4.94

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80930
fragaria_vesca	FvH4_3g01450 FvH4_3g43230 FvH4_3g43240 FvH4_3g43240
malus_domestica	MD03G1023500.v1.1 MD11G1028600.v1.1
prunus_persica	Prupe.6G022700_v2.0.a1 Prupe.6G022700_v2.0.a1
pyrus_communis	pycom03g02010 pycom11g02210
rosa_chinensis	RchiOBHm_Chr5g0002291 RchiOBHm_Chr5g0077281 RchiOBHm_Chr5g0077291
rosa_laevigata	RLG00000031014 RLG00000036681 RLG00000036682
rosa_multiflora	Rmu_co8446135.1_g000001 Rmu_sc0000433.1_g000042 Rmu_sc0001492.1_g000008 Rmu_sc0005576.1_g000001 Rmu_sc0006137.1_g000009 Rmu_sc0008383.1_g000001 Rmu_sc0013155.1_g000012 Rmu_ssc0000410.1_g000040
rosa_roxburghii	Rroxscaffold_1G00004680 Rroxscaffold_1G00073650
rosa_rugosa	Rorug04G0394900 Rorug05G0453500
rosa_samantha	Rh5AG017700 Rh5AG508400 Rh5AG508500 Rh5BG020300 Rh5BG529600 Rh5CG019100 Rh5CG019400 Rh5CG554100 Rh5DG018300 Rh5DG542200
rosa_wichuraiana	Rw5G046900 Rw5G046910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	922
AatII	GACGTC	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	938
AccB1I	GGYRCC	1 cut(s)	621
AccII	CGCG	1 cut(s)	356
AclWI	GGATC	2 cut(s)	484, 731
AcsI	RAATTY	2 cut(s)	126, 347
AcuI	CTGAAG	2 cut(s)	522, 813
AcyI	GRCGYC	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	471
AfeI	AGCGCT	3 cut(s)	41, 527, 764
AfiI	CCNNNNNNNGG	1 cut(s)	260
AflII	CTTAAG	2 cut(s)	296, 962
AgsI	TTSAA	4 cut(s)	85, 181, 446, 692
AjnI	CCWGG	2 cut(s)	199, 979
AjuI	GAANNNNNNNTTGG	2 cut(s)	438, 470
AluBI	AGCT	6 cut(s)	295, 338, 629, 827, 958, 973
AluI	AGCT	6 cut(s)	295, 338, 629, 827, 958, 973
Alw26I	GTCTC	5 cut(s)	164, 854, 860, 866, 872
AlwI	GGATC	2 cut(s)	484, 731
Aor51HI	AGCGCT	3 cut(s)	41, 527, 764
AoxI	GGCC	1 cut(s)	982
ApeKI	GCWGC	4 cut(s)	98, 292, 415, 824
ApoI	RAATTY	2 cut(s)	126, 347
AspLEI	GCGC	4 cut(s)	42, 358, 528, 765
AspS9I	GGNCC	1 cut(s)	646
AsuHPI	GGTGA	2 cut(s)	275, 489
AsuII	TTCGAA	1 cut(s)	898
AvaII	GGWCC	1 cut(s)	646
AxyI	CCTNAGG	1 cut(s)	255
BaeGI	GKGCMC	1 cut(s)	624
BanI	GGYRCC	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	669
BbvI	GCAGC	4 cut(s)	85, 304, 402, 836
BccI	CCATC	2 cut(s)	184, 431
BciT130I	CCWGG	2 cut(s)	201, 981
BcoDI	GTCTC	5 cut(s)	164, 854, 860, 866, 872
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	485
BfoI	RGCGCY	3 cut(s)	43, 529, 766
BfrI	CTTAAG	2 cut(s)	296, 962
BfuAI	ACCTGC	1 cut(s)	938
BisI	GCNGC	4 cut(s)	99, 293, 416, 825
BlsI	GCNGC	4 cut(s)	100, 294, 417, 826
Bme1390I	CCNGG	2 cut(s)	201, 981
Bme18I	GGWCC	1 cut(s)	646
BmgT120I	GGNCC	1 cut(s)	646
BmiI	GGNNCC	2 cut(s)	509, 623
BmrFI	CCNGG	2 cut(s)	201, 981
BmsI	GCATC	4 cut(s)	43, 367, 525, 811
BpiI	GAAGAC	1 cut(s)	669
BpmI	CTGGAG	1 cut(s)	440
Bpu14I	TTCGAA	1 cut(s)	898
Bsa29I	ATCGAT	1 cut(s)	432
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	2 cut(s)	164, 872
BsaWI	WCCGGW	1 cut(s)	926
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	2 cut(s)	648, 667
Bse21I	CCTNAGG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	201, 981
BseCI	ATCGAT	1 cut(s)	432
BseGI	GGATG	2 cut(s)	58, 582
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	648, 667
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	4 cut(s)	85, 304, 402, 836
BseYI	CCCAGC	1 cut(s)	625
Bsh1236I	CGCG	1 cut(s)	356
BshFI	GGCC	1 cut(s)	984
BshNI	GGYRCC	1 cut(s)	621
BshVI	ATCGAT	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	927
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	5 cut(s)	164, 854, 860, 866, 872
BsmBI	CGTCTC	3 cut(s)	854, 860, 866
BsnI	GGCC	1 cut(s)	984
Bso31I	GGTCTC	2 cut(s)	164, 872
Bsp119I	TTCGAA	1 cut(s)	898
Bsp1286I	GDGCHC	2 cut(s)	510, 624
Bsp143I	GATC	3 cut(s)	476, 579, 736
BspANI	GGCC	1 cut(s)	984
BspCNI	CTCAG	1 cut(s)	247
BspDI	ATCGAT	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	356
BspHI	TCATGA	3 cut(s)	382, 544, 676
BspLI	GGNNCC	2 cut(s)	509, 623
BspMAI	CTGCAG	1 cut(s)	489
BspMI	ACCTGC	1 cut(s)	938
BspPI	GGATC	2 cut(s)	484, 731
BspT104I	TTCGAA	1 cut(s)	898
BspT107I	GGYRCC	1 cut(s)	621
BspTI	CTTAAG	2 cut(s)	296, 962
BspTNI	GGTCTC	2 cut(s)	164, 872
BsrI	ACTGG	2 cut(s)	648, 667
BssMI	GATC	3 cut(s)	476, 579, 736
BssNI	GRCGYC	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	201, 981
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	2 cut(s)	148, 693
BstACI	GRCGYC	1 cut(s)	213
BstAFI	CTTAAG	2 cut(s)	296, 962
BstBI	TTCGAA	1 cut(s)	898
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	58, 582
BstFNI	CGCG	1 cut(s)	356
BstH2I	RGCGCY	3 cut(s)	43, 529, 766
BstHHI	GCGC	4 cut(s)	42, 358, 528, 765
BstKTI	GATC	3 cut(s)	479, 582, 739
BstMAI	GTCTC	5 cut(s)	164, 854, 860, 866, 872
BstMBI	GATC	3 cut(s)	476, 579, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNI	CCWGG	2 cut(s)	201, 981
BstSCI	CCNGG	2 cut(s)	199, 979
BstSFI	CTRYAG	1 cut(s)	485
BstSLI	GKGCMC	1 cut(s)	624
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	4 cut(s)	85, 304, 402, 836
BstV2I	GAAGAC	1 cut(s)	669
Bsu15I	ATCGAT	1 cut(s)	432
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	984
BsuTUI	ATCGAT	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	58, 582
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	93, 408
BveI	ACCTGC	1 cut(s)	938
Cac8I	GCNNGC	1 cut(s)	223
CciI	TCATGA	3 cut(s)	382, 544, 676
CfoI	GCGC	4 cut(s)	42, 358, 528, 765
Cfr13I	GGNCC	1 cut(s)	646
ClaI	ATCGAT	1 cut(s)	432
CviAII	CATG	5 cut(s)	48, 383, 545, 677, 922
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	3 cut(s)	478, 581, 738
DpnII	GATC	3 cut(s)	476, 579, 736
DraIII	CACNNNGTG	1 cut(s)	471
DrdI	GACNNNNNNGTC	1 cut(s)	922
DseDI	GACNNNNNNGTC	1 cut(s)	922
Eam1104I	CTCTTC	2 cut(s)	148, 693
EarI	CTCTTC	2 cut(s)	148, 693
Eco24I	GRGCYC	1 cut(s)	510
Eco31I	GGTCTC	2 cut(s)	164, 872
Eco47I	GGWCC	1 cut(s)	646
Eco47III	AGCGCT	3 cut(s)	41, 527, 764
Eco57I	CTGAAG	2 cut(s)	522, 813
Eco81I	CCTNAGG	1 cut(s)	255
EcoRII	CCWGG	2 cut(s)	199, 979
EcoT38I	GRGCYC	1 cut(s)	510
Esp3I	CGTCTC	3 cut(s)	854, 860, 866
FaeI	CATG	5 cut(s)	51, 386, 548, 680, 925
FatI	CATG	5 cut(s)	47, 382, 544, 676, 921
Fnu4HI	GCNGC	4 cut(s)	99, 293, 416, 825
FokI	GGATG	2 cut(s)	65, 589
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	4 cut(s)	99, 293, 416, 825
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	4 cut(s)	41, 357, 527, 764
GluI	GCNGC	4 cut(s)	99, 293, 416, 825
GsaI	CCCAGC	1 cut(s)	629
GsuI	CTGGAG	1 cut(s)	440
HaeII	RGCGCY	3 cut(s)	43, 529, 766
HaeIII	GGCC	1 cut(s)	984
HapII	CCGG	1 cut(s)	927
HhaI	GCGC	4 cut(s)	42, 358, 528, 765
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	5 cut(s)	51, 386, 548, 680, 925
Hin6I	GCGC	4 cut(s)	40, 356, 526, 763
HinP1I	GCGC	4 cut(s)	40, 356, 526, 763
HincII	GTYRAC	3 cut(s)	241, 367, 672
HindII	GTYRAC	3 cut(s)	241, 367, 672
HindIII	AAGCTT	1 cut(s)	971
HinfI	GANTC	4 cut(s)	139, 282, 424, 892
HpaI	GTTAAC	2 cut(s)	241, 672
HpaII	CCGG	1 cut(s)	927
HphI	GGTGA	2 cut(s)	275, 489
Hpy166II	GTNNAC	4 cut(s)	241, 266, 367, 672
Hpy188I	TCNGA	4 cut(s)	62, 820, 832, 915
Hpy188III	TCNNGA	8 cut(s)	122, 254, 383, 545, 638, 677, 707, 740
Hpy8I	GTNNAC	4 cut(s)	241, 266, 367, 672
HpyAV	CCTTC	6 cut(s)	497, 542, 578, 598, 806, 894
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	6 cut(s)	101, 134, 292, 487, 596, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	51, 386, 548, 680, 925
HspAI	GCGC	4 cut(s)	40, 356, 526, 763
KspAI	GTTAAC	2 cut(s)	241, 672
Kzo9I	GATC	3 cut(s)	476, 579, 736
LmnI	GCTCC	3 cut(s)	343, 513, 963
Lsp1109I	GCAGC	4 cut(s)	85, 304, 402, 836
LweI	GCATC	4 cut(s)	43, 367, 525, 811
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	3 cut(s)	91, 183, 463
MalI	GATC	3 cut(s)	478, 581, 738
MboI	GATC	3 cut(s)	476, 579, 736
MboII	GAAGA	9 cut(s)	26, 165, 291, 533, 674, 680, 782, 790, 887
MhlI	GDGCHC	2 cut(s)	510, 624
MluCI	AATT	8 cut(s)	117, 126, 347, 401, 537, 555, 711, 786
MnlI	CCTC	5 cut(s)	68, 149, 250, 296, 934
MseI	TTAA	7 cut(s)	108, 240, 297, 309, 671, 963, 969
MspA1I	CMGCKG	1 cut(s)	629
MspCI	CTTAAG	2 cut(s)	296, 962
MspI	CCGG	1 cut(s)	927
MspR9I	CCNGG	2 cut(s)	201, 981
MvaI	CCWGG	2 cut(s)	201, 981
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	412
NdeII	GATC	3 cut(s)	476, 579, 736
NlaIII	CATG	5 cut(s)	51, 386, 548, 680, 925
NlaIV	GGNNCC	2 cut(s)	509, 623
NmuCI	GTSAC	3 cut(s)	91, 183, 463
NspV	TTCGAA	1 cut(s)	898
PagI	TCATGA	3 cut(s)	382, 544, 676
PfeI	GAWTC	4 cut(s)	139, 282, 424, 892
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	4 cut(s)	100, 294, 417, 826
Psp6I	CCWGG	2 cut(s)	199, 979
PspFI	CCCAGC	1 cut(s)	625
PspGI	CCWGG	2 cut(s)	199, 979
PspN4I	GGNNCC	2 cut(s)	509, 623
PspPI	GGNCC	1 cut(s)	646
PstI	CTGCAG	1 cut(s)	489
PvuII	CAGCTG	1 cut(s)	629
SaqAI	TTAA	7 cut(s)	108, 240, 297, 309, 671, 963, 969
SatI	GCNGC	4 cut(s)	99, 293, 416, 825
Sau3AI	GATC	3 cut(s)	476, 579, 736
Sau96I	GGNCC	1 cut(s)	646
ScrFI	CCNGG	2 cut(s)	201, 981
SduI	GDGCHC	2 cut(s)	510, 624
SfaNI	GCATC	4 cut(s)	43, 367, 525, 811
SfcI	CTRYAG	1 cut(s)	485
SfuI	TTCGAA	1 cut(s)	898
SinI	GGWCC	1 cut(s)	646
SmlI	CTYRAG	3 cut(s)	296, 962, 974
SmoI	CTYRAG	3 cut(s)	296, 962, 974
Sse9I	AATT	8 cut(s)	117, 126, 347, 401, 537, 555, 711, 786
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	199, 979
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	5 cut(s)	12, 432, 582, 729, 898
TasI	AATT	8 cut(s)	117, 126, 347, 401, 537, 555, 711, 786
TfiI	GAWTC	4 cut(s)	139, 282, 424, 892
Tru1I	TTAA	7 cut(s)	108, 240, 297, 309, 671, 963, 969
Tru9I	TTAA	7 cut(s)	108, 240, 297, 309, 671, 963, 969
TscAI	CASTG	2 cut(s)	100, 415
TseFI	GTSAC	3 cut(s)	91, 183, 463
TseI	GCWGC	4 cut(s)	98, 292, 415, 824
Tsp45I	GTSAC	3 cut(s)	91, 183, 463
TspDTI	ATGAA	7 cut(s)	17, 533, 561, 736, 783, 825, 860
TspGWI	ACGGA	4 cut(s)	616, 878, 884, 890
TspRI	CASTG	2 cut(s)	100, 415
Vha464I	CTTAAG	2 cut(s)	296, 962
VpaK11BI	GGWCC	1 cut(s)	646
XapI	RAATTY	2 cut(s)	126, 347
XspI	CTAG	1 cut(s)	335
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.