FvH4_3g45300

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003364
Physical Location & Seq
Forward (+)
37609838 .. 37611804
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45300.t1

Sequence Viewer

Length: 1047 bp
ATGGGGATTCCTGAAGTGCCGGAGTGGATTCCGGGCCTGCCGGAGGACCTCGGGCTGGAGTGCCTGACCCGGCTGCCCTATTCGGCCCACCCGATCGCTTCACGGGTCTGCCGGCCGTGGCGATCACTCCTGGAAAGCAAGGACTTCTATCACCACAGGAAGCGGAACGGTTACACCCGGAAGGTGGCCTGTTTGGTTCAGGCTACTAGTGGGGCAGTCACTCTCGAATCAAATCAGCCGAAATCGAACACCGCGGGATCCGCAAGTTACGGAATCGCGGTGTTCGATTCGGTTTCGGGTACTTGGGAGCGGCTGGACCCGATTCCCAAGTACCCGAACGGCCTGCCGATGTTTTGTCAGCTGGCGAGCTGCGAGGGGAGGCTGGTGGTGATGGGCGGGTGGGACCCGGCGACGTACAAGCCGGTCGCCGACGTGTTCGTTTACGAGTTCACGACGTGTCGTTGGAGGAAGGGGAGGGAAATGCCGTCGAAGCGGTCGTTTTTCGCGATCGGGTCGAGCGGGAGCCGGGTCTACGTCGCGGGCGGGCACGACGAGAGCAAGAACGCGCTCAGATCGGCGTGGGTTTACGACCTGAGGCGGGACGAGTGGGCCGAGTTGACTCAGATGAGCCGGGAGAGGGACGAGTGTCAGGGGGTGGTGGTCGGGGACGAGTTTTGGGTGGTGAGCGGGTACGGGACGGCGAGCCAGGGAGCGTTTGAGGGCGGGGCGGAGGTGTTGGATCTCGGGTCGGGTCGGTGGAGGCGGGTCGACGGCGCGTGGGAGGAGGGGCAGTGTCCGAGGGCGTGTGGGGGTGGGGTTGGGAGAGATGGGAGGCTGGTGAGTTGGGCCGAGTTGGGCCCGGCTGCGCGGGTCGGGACCCGTGGGGTCGATCTCGGGTCTCGGGTCCTGGTGATGGGTTCGGAGTATGATGGCGCGAACCAAGGGATCTTTGTGAAGGGAGAAGGGCAGAATGGTAAATTGGAGAAGGTTAGTGTGCCGGAAGAGTTTTCTGGGTTTGTTCAATCCGGCTGTTGTGTTGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0019222 GO:0031323 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:2000762
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Kelch_1

Protein Analysis

349

Amino Acids

38.03

Weight (kDa)

5.95

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 51 1.7e-07 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 87 - 259 6.6e-15 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 92 - 235 4.1e-10 FBX42, beta-propeller domain
Kelch_FKB95 PF25210 104 - 230 1.4e-09 FKB95, Kelch-repeats domain
Kelch_1 PF01344 121 - 162 1.8e-06 Kelch motif
Beta-prop_Calicin PF13964 129 - 214 2.8e-11 Calicin, beta-propeller domain
Beta-prop_ATRN-LZTR1 PF24981 130 - 256 5e-06 Attractin/LZTR1 beta-propeller
Kelch_1 PF01344 165 - 210 7.8e-11 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 310, 519, 687
AccI GTMKAC 2 cut(s) 531, 768
AccII CGCG 8 cut(s) 254, 278, 506, 539, 566, 776, 868, 935
AclWI GGATC 4 cut(s) 252, 265, 747, 953
AcoI YGGCCR 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 33
AdeI CACNNNGTG 1 cut(s) 456
AfaI GTAC 4 cut(s) 301, 332, 416, 692
AfiI CCNNNNNNNGG 6 cut(s) 43, 55, 184, 598, 637, 913
AflIII ACRYGT 2 cut(s) 432, 455
AgsI TTSAA 1 cut(s) 1022
AhlI ACTAGT 1 cut(s) 206
AjiI CACGTC 2 cut(s) 433, 456
AjnI CCWGG 3 cut(s) 129, 705, 906
AjuI GAANNNNNNNTTGG 2 cut(s) 962, 994
AluBI AGCT 2 cut(s) 361, 369
AluI AGCT 2 cut(s) 361, 369
Alw26I GTCTC 1 cut(s) 903
AlwI GGATC 4 cut(s) 252, 265, 747, 953
Ama87I CYCGRG 4 cut(s) 50, 743, 893, 900
AoxI GGCC 8 cut(s) 34, 84, 113, 186, 340, 609, 846, 856
ApaI GGGCCC 1 cut(s) 860
ApeKI GCWGC 3 cut(s) 73, 369, 863
AspLEI GCGC 4 cut(s) 568, 776, 868, 935
AsuC2I CCSGG 7 cut(s) 33, 70, 178, 407, 527, 632, 860
AsuHPI GGTGA 5 cut(s) 143, 400, 694, 850, 922
AvaI CYCGRG 4 cut(s) 50, 743, 893, 900
AvaII GGWCC 5 cut(s) 46, 316, 403, 876, 904
AxyI CCTNAGG 1 cut(s) 593
BaeGI GKGCMC 2 cut(s) 549, 860
BamHI GGATCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 860
BbvI GCAGC 3 cut(s) 60, 356, 850
BccI CCATC 4 cut(s) 385, 821, 907, 923
BceAI ACGGC 5 cut(s) 100, 355, 469, 714, 787
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 3 cut(s) 131, 707, 908
BcnI CCSGG 7 cut(s) 33, 70, 178, 407, 527, 632, 860
BcoDI GTCTC 1 cut(s) 903
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 1 cut(s) 207
BisI GCNGC 4 cut(s) 74, 311, 370, 864
BlsI GCNGC 4 cut(s) 75, 312, 371, 865
Bme18I GGWCC 5 cut(s) 46, 316, 403, 876, 904
BmeT110I CYCGRG 4 cut(s) 50, 743, 893, 900
BmgBI CACGTC 2 cut(s) 433, 456
BmiI GGNNCC 9 cut(s) 259, 318, 404, 405, 524, 858, 877, 878, 905
BoxI GACNNNNGTC 1 cut(s) 645
BpmI CTGGAG 1 cut(s) 77
BpuMI CCSGG 7 cut(s) 33, 70, 178, 407, 527, 632, 860
BsaI GGTCTC 1 cut(s) 903
BsaJI CCNNGG 7 cut(s) 49, 116, 252, 706, 797, 880, 940
BsaXI ACNNNNNCTCC 2 cut(s) 776, 806
Bsc4I CCNNNNNNNGG 6 cut(s) 43, 55, 184, 598, 637, 913
Bse118I RCCGGY 2 cut(s) 111, 421
Bse21I CCTNAGG 1 cut(s) 593
BseBI CCWGG 3 cut(s) 131, 707, 908
BseDI CCNNGG 7 cut(s) 49, 116, 252, 706, 797, 880, 940
BseLI CCNNNNNNNGG 6 cut(s) 43, 55, 184, 598, 637, 913
BseMII CTCAG 3 cut(s) 583, 584, 635
BseRI GAGGAG 1 cut(s) 797
BseSI GKGCMC 2 cut(s) 549, 860
BseX3I CGGCCG 1 cut(s) 113
BseXI GCAGC 3 cut(s) 60, 356, 850
Bsh1236I CGCG 8 cut(s) 254, 278, 506, 539, 566, 776, 868, 935
Bsh1285I CGRYCG 5 cut(s) 96, 116, 426, 497, 510
BshFI GGCC 8 cut(s) 36, 86, 115, 188, 342, 611, 848, 858
BsiEI CGRYCG 5 cut(s) 96, 116, 426, 497, 510
BsiHKCI CYCGRG 4 cut(s) 50, 743, 893, 900
BslFI GGGAC 6 cut(s) 416, 614, 653, 680, 709, 889
BslI CCNNNNNNNGG 6 cut(s) 43, 55, 184, 598, 637, 913
BsmAI GTCTC 1 cut(s) 903
BsmFI GGGAC 6 cut(s) 416, 614, 653, 680, 709, 889
BsnI GGCC 8 cut(s) 36, 86, 115, 188, 342, 611, 848, 858
Bso31I GGTCTC 1 cut(s) 903
BsoBI CYCGRG 4 cut(s) 50, 743, 893, 900
Bsp120I GGGCCC 1 cut(s) 856
Bsp1286I GDGCHC 2 cut(s) 549, 860
Bsp143I GATC 8 cut(s) 93, 122, 257, 507, 572, 739, 889, 945
Bsp68I TCGCGA 1 cut(s) 506
BspANI GGCC 8 cut(s) 36, 86, 115, 188, 342, 611, 848, 858
BspCNI CTCAG 3 cut(s) 582, 585, 634
BspFNI CGCG 8 cut(s) 254, 278, 506, 539, 566, 776, 868, 935
BspLI GGNNCC 9 cut(s) 259, 318, 404, 405, 524, 858, 877, 878, 905
BspPI GGATC 4 cut(s) 252, 265, 747, 953
BspTNI GGTCTC 1 cut(s) 903
BsrBI CCGCTC 3 cut(s) 310, 519, 687
BsrFI RCCGGY 2 cut(s) 111, 421
BssAI RCCGGY 2 cut(s) 111, 421
BssECI CCNNGG 7 cut(s) 49, 116, 252, 706, 797, 880, 940
BssMI GATC 8 cut(s) 93, 122, 257, 507, 572, 739, 889, 945
BssT1I CCWWGG 1 cut(s) 940
Bst2UI CCWGG 3 cut(s) 131, 707, 908
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 996
BstC8I GCNNGC 8 cut(s) 38, 113, 344, 363, 367, 541, 545, 703
BstDEI CTNAG 3 cut(s) 569, 593, 621
BstDSI CCRYGG 3 cut(s) 116, 252, 880
BstENI CCTNNNNNAGG 1 cut(s) 41
BstFNI CGCG 8 cut(s) 254, 278, 506, 539, 566, 776, 868, 935
BstHHI GCGC 4 cut(s) 568, 776, 868, 935
BstKTI GATC 8 cut(s) 96, 125, 260, 510, 575, 742, 892, 948
BstMAI GTCTC 1 cut(s) 903
BstMBI GATC 8 cut(s) 93, 122, 257, 507, 572, 739, 889, 945
BstMCI CGRYCG 5 cut(s) 96, 116, 426, 497, 510
BstMWI GCNNNNNNNGC 2 cut(s) 260, 490
BstNI CCWGG 3 cut(s) 131, 707, 908
BstPAI GACNNNNGTC 1 cut(s) 645
BstSLI GKGCMC 2 cut(s) 549, 860
BstUI CGCG 8 cut(s) 254, 278, 506, 539, 566, 776, 868, 935
BstV1I GCAGC 3 cut(s) 60, 356, 850
BstX2I RGATCY 3 cut(s) 257, 739, 945
BstYI RGATCY 3 cut(s) 257, 739, 945
BstZI CGGCCG 1 cut(s) 113
Bsu36I CCTNAGG 1 cut(s) 593
BsuRI GGCC 8 cut(s) 36, 86, 115, 188, 342, 611, 848, 858
BtgI CCRYGG 3 cut(s) 116, 252, 880
BtrI CACGTC 2 cut(s) 433, 456
BtsI GCAGTG 1 cut(s) 797
BtsIMutI CAGTG 1 cut(s) 797
BtuMI TCGCGA 1 cut(s) 506
Cac8I GCNNGC 8 cut(s) 38, 113, 344, 363, 367, 541, 545, 703
CfoI GCGC 4 cut(s) 568, 776, 868, 935
Cfr10I RCCGGY 2 cut(s) 111, 421
Cfr42I CCGCGG 1 cut(s) 255
Csp6I GTAC 4 cut(s) 300, 331, 415, 691
CviQI GTAC 4 cut(s) 300, 331, 415, 691
DdeI CTNAG 3 cut(s) 569, 593, 621
DpnI GATC 8 cut(s) 95, 124, 259, 509, 574, 741, 891, 947
DpnII GATC 8 cut(s) 93, 122, 257, 507, 572, 739, 889, 945
DraIII CACNNNGTG 1 cut(s) 456
EaeI YGGCCR 1 cut(s) 113
EagI CGGCCG 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 996
EarI CTCTTC 1 cut(s) 996
EciI GGCGGA 1 cut(s) 743
EclXI CGGCCG 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 940
Eco24I GRGCYC 1 cut(s) 860
Eco31I GGTCTC 1 cut(s) 903
Eco47I GGWCC 5 cut(s) 46, 316, 403, 876, 904
Eco52I CGGCCG 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 33
Eco81I CCTNAGG 1 cut(s) 593
Eco88I CYCGRG 4 cut(s) 50, 743, 893, 900
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoO109I RGGNCCY 4 cut(s) 46, 403, 876, 904
EcoRII CCWGG 3 cut(s) 129, 705, 906
EcoT14I CCWWGG 1 cut(s) 940
EcoT38I GRGCYC 1 cut(s) 860
ErhI CCWWGG 1 cut(s) 940
FaiI YATR 1 cut(s) 927
FaqI GGGAC 6 cut(s) 416, 614, 653, 680, 709, 889
FblI GTMKAC 2 cut(s) 531, 768
Fnu4HI GCNGC 4 cut(s) 74, 311, 370, 864
FriOI GRGCYC 1 cut(s) 860
Fsp4HI GCNGC 4 cut(s) 74, 311, 370, 864
FspBI CTAG 1 cut(s) 207
GlaI GCGC 4 cut(s) 567, 775, 867, 934
GluI GCNGC 4 cut(s) 74, 311, 370, 864
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 8 cut(s) 36, 86, 115, 188, 342, 611, 848, 858
HhaI GCGC 4 cut(s) 568, 776, 868, 935
Hin6I GCGC 4 cut(s) 566, 774, 866, 933
HinP1I GCGC 4 cut(s) 566, 774, 866, 933
HincII GTYRAC 2 cut(s) 618, 769
HindII GTYRAC 2 cut(s) 618, 769
HinfI GANTC 7 cut(s) 7, 28, 227, 273, 287, 322, 619
HphI GGTGA 5 cut(s) 143, 400, 694, 850, 922
Hpy166II GTNNAC 6 cut(s) 442, 450, 532, 586, 618, 769
Hpy188I TCNGA 4 cut(s) 572, 624, 798, 922
Hpy188III TCNNGA 5 cut(s) 11, 224, 451, 505, 874
Hpy8I GTNNAC 6 cut(s) 442, 450, 532, 586, 618, 769
Hpy99I CGWCG 7 cut(s) 415, 434, 457, 490, 539, 554, 773
HpyAV CCTTC 5 cut(s) 175, 463, 949, 956, 979
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 4 cut(s) 413, 432, 455, 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 490
HpyF3I CTNAG 3 cut(s) 569, 593, 621
HpySE526I ACGT 4 cut(s) 413, 432, 455, 534
HspAI GCGC 4 cut(s) 566, 774, 866, 933
KflI GGGWCCC 2 cut(s) 403, 876
KroI GCCGGC 1 cut(s) 111
KroNI GCCGGC 1 cut(s) 113
KspI CCGCGG 1 cut(s) 255
Kzo9I GATC 8 cut(s) 93, 122, 257, 507, 572, 739, 889, 945
LmnI GCTCC 3 cut(s) 307, 522, 710
Lsp1109I GCAGC 3 cut(s) 60, 356, 850
MaeI CTAG 1 cut(s) 207
MaeII ACGT 4 cut(s) 413, 432, 455, 534
MaeIII GTNAC 3 cut(s) 170, 217, 266
MalI GATC 8 cut(s) 95, 124, 259, 509, 574, 741, 891, 947
MbiI CCGCTC 3 cut(s) 310, 519, 687
MboI GATC 8 cut(s) 93, 122, 257, 507, 572, 739, 889, 945
MboII GAAGA 1 cut(s) 1013
MflI RGATCY 3 cut(s) 257, 739, 945
MhlI GDGCHC 2 cut(s) 549, 860
MluCI AATT 1 cut(s) 977
MlyI GAGTC 1 cut(s) 613
MmeI TCCRAC 2 cut(s) 443, 717
MroNI GCCGGC 1 cut(s) 111
MspA1I CMGCKG 2 cut(s) 254, 361
MvaI CCWGG 3 cut(s) 131, 707, 908
MvnI CGCG 8 cut(s) 254, 278, 506, 539, 566, 776, 868, 935
MwoI GCNNNNNNNGC 2 cut(s) 260, 490
NaeI GCCGGC 1 cut(s) 113
NciI CCSGG 7 cut(s) 33, 70, 178, 407, 527, 632, 860
NdeII GATC 8 cut(s) 93, 122, 257, 507, 572, 739, 889, 945
NgoMIV GCCGGC 1 cut(s) 111
NlaIV GGNNCC 9 cut(s) 259, 318, 404, 405, 524, 858, 877, 878, 905
NmeAIII GCCGAG 2 cut(s) 637, 874
NmuCI GTSAC 1 cut(s) 217
NruI TCGCGA 1 cut(s) 506
PcsI WCGNNNNNNNCGW 5 cut(s) 89, 282, 494, 503, 609
PdiI GCCGGC 1 cut(s) 113
PfeI GAWTC 6 cut(s) 7, 28, 227, 273, 287, 322
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 4 cut(s) 75, 312, 371, 865
Ple19I CGATCG 2 cut(s) 96, 510
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
PpuMI RGGWCCY 4 cut(s) 46, 403, 876, 904
PshAI GACNNNNGTC 1 cut(s) 645
Psp5II RGGWCCY 4 cut(s) 46, 403, 876, 904
Psp6I CCWGG 3 cut(s) 129, 705, 906
PspGI CCWGG 3 cut(s) 129, 705, 906
PspN4I GGNNCC 9 cut(s) 259, 318, 404, 405, 524, 858, 877, 878, 905
PspOMI GGGCCC 1 cut(s) 856
PspPPI RGGWCCY 4 cut(s) 46, 403, 876, 904
PsuI RGATCY 3 cut(s) 257, 739, 945
PvuI CGATCG 2 cut(s) 96, 510
PvuII CAGCTG 1 cut(s) 361
RruI TCGCGA 1 cut(s) 506
RsaI GTAC 4 cut(s) 301, 332, 416, 692
RsaNI GTAC 4 cut(s) 300, 331, 415, 691
SacII CCGCGG 1 cut(s) 255
SalI GTCGAC 1 cut(s) 767
SatI GCNGC 4 cut(s) 74, 311, 370, 864
Sau3AI GATC 8 cut(s) 93, 122, 257, 507, 572, 739, 889, 945
SchI GAGTC 1 cut(s) 613
SduI GDGCHC 2 cut(s) 549, 860
Sfr303I CCGCGG 1 cut(s) 255
SgrBI CCGCGG 1 cut(s) 255
SinI GGWCC 5 cut(s) 46, 316, 403, 876, 904
SpeI ACTAGT 1 cut(s) 206
Sse9I AATT 1 cut(s) 977
SspMI CTAG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 940
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 4 cut(s) 416, 435, 458, 537
TaqI TCGA 7 cut(s) 225, 245, 285, 488, 515, 768, 888
TasI AATT 1 cut(s) 977
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 6 cut(s) 7, 28, 227, 273, 287, 322
TscAI CASTG 1 cut(s) 797
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 3 cut(s) 73, 369, 863
Tsp45I GTSAC 1 cut(s) 217
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 1 cut(s) 797
VpaK11BI GGWCC 5 cut(s) 46, 316, 403, 876, 904
XagI CCTNNNNNAGG 1 cut(s) 41
XmiI GTMKAC 2 cut(s) 531, 768
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.