RLG00000037006

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003364
Physical Location & Seq
Forward (+)
87453568 .. 87454611
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037006

Sequence Viewer

Length: 1044 bp
ATGGGGGTTCCTAAAGTCCCCGAGTGGATTCCTGGCCTGCCGGAAGAGCTCGGACTCGAGTGCCTGACCCGGCTTCCGTACTCGGCCCACCCCACCGCCTCCCGGGTCTGCCGTCCGTGGCGGTCCTTGCTCGAAAGCAAGGAGTTCTATCACCACAGGAAGCAGAACGGGTACACCCGAAACGTGGCCTGTTTGGTCCAGGCCGTTGCAGTTGCTGTTGAATTGAACACCGGCGGCCCCAAATCGGGTGCCGGAGGCTCGCCGAGTTACGGAATCGCCGTGTTCGACTCGGTGAGTGGGACCTGGGAGCGGCTCGACCCGATTCCCAAGTACCCGAATGGGCTGCCGATGTTTTGTCAGGTGGCGAGCTGCGAGGGGAAGCTGGTGGTGATGGGCGGGTGGGATCCGGCGACGTACAAGCCGGTCACCGACGTGTTCGTTTACGAGTTTACGACGTGTCGTTGGAGGAGGGGGCGGGCAATGCCGTCGAAGCGGTCGTTTTTCGCGATCGGGTCGCGCGGGAGTCGGGTCTACGTTGCGGGCGGCCACGACGAGAGCAAGAACGCGCTGAAATCGGCGTGGGTTTACGATCTGAGGCGGGACGAGTGGGCCGAGTTGACTCAGATGAGTCGGGAGCGCGACGAGTGTCACGGGTTGGTGATCGGAGACGAGTTTTGGGTGGTGAGCGGGTACGGGACGGCGAGCCAGGGAGCGTTTGAGGGCGGAGCGGAGGCGTTGGATCTCGGGTCGGGTCGGTGGAGGCGGGTCGATGGCGCGTGGGAGGAAGGTGTGTGTCCGAGGGCGTGTGGGGGTGGAGTTGGGAGAGAGGGGAGGCTGGTGAGTTGGGCCGAGTTGGGCCCGGCGGTCCGGGTCGGGACGCGTGGGGTGAACCTCGGGTCCCGGGTCCTGGTGATGGGTTCGGAGTACGATAGCGGGGGCCAAGGGGTATTCATGAAGGATGGGCAAAATGGTAAATTGGAGAGGGTCAGTGTGCCTGAAGAGTTTTCTGGGTTTATTCAATCAGGCTGTTGTGTTGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0019222 GO:0031323 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:2000762
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Kelch_1

Protein Analysis

348

Amino Acids

37.8

Weight (kDa)

6.95

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 51 1.2e-07 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 86 - 257 9.5e-15 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 92 - 234 6.7e-10 FBX42, beta-propeller domain
Kelch_1 PF01344 119 - 162 7.2e-07 Kelch motif
Beta-prop_Calicin PF13964 129 - 220 1.4e-10 Calicin, beta-propeller domain
Kelch_FKB95 PF25210 138 - 230 1.3e-07 FKB95, Kelch-repeats domain
Kelch_1 PF01344 165 - 210 3.5e-10 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 248
AccBSI CCGCTC 3 cut(s) 310, 687, 728
AccI GTMKAC 1 cut(s) 531
AccII CGCG 7 cut(s) 506, 517, 519, 566, 639, 776, 880
AclWI GGATC 3 cut(s) 398, 411, 747
AcoI YGGCCR 1 cut(s) 544
AcuI CTGAAG 1 cut(s) 1017
AfaI GTAC 6 cut(s) 80, 173, 332, 416, 692, 926
AfiI CCNNNNNNNGG 8 cut(s) 102, 184, 244, 245, 269, 309, 907, 913
AflIII ACRYGT 3 cut(s) 432, 455, 878
AgsI TTSAA 3 cut(s) 221, 226, 1019
AjiI CACGTC 2 cut(s) 433, 456
AjnI CCWGG 5 cut(s) 31, 198, 302, 705, 906
AleI CACNNNNGTG 1 cut(s) 431
AloI GAACNNNNNNTCC 2 cut(s) 881, 913
AluBI AGCT 3 cut(s) 49, 369, 382
AluI AGCT 3 cut(s) 49, 369, 382
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 3 cut(s) 398, 411, 747
AlwNI CAGNNNCTG 1 cut(s) 215
Ama87I CYCGRG 6 cut(s) 20, 56, 102, 743, 893, 900
ApaI GGGCCC 1 cut(s) 860
ApeKI GCWGC 2 cut(s) 343, 369
AspLEI GCGC 4 cut(s) 519, 568, 639, 776
AsuC2I CCSGG 7 cut(s) 70, 103, 104, 860, 869, 901, 902
AsuHPI GGTGA 9 cut(s) 143, 304, 400, 418, 670, 694, 850, 898, 922
AvaI CYCGRG 6 cut(s) 20, 56, 102, 743, 893, 900
AvaII GGWCC 6 cut(s) 123, 196, 300, 865, 897, 904
BaeGI GKGCMC 1 cut(s) 860
BamHI GGATCC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 248
BanII GRGCYC 2 cut(s) 51, 860
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 330, 356
BccI CCATC 4 cut(s) 385, 764, 907, 953
BceAI ACGGC 5 cut(s) 96, 188, 263, 469, 714
BcgI CGANNNNNNTGC 4 cut(s) 325, 359, 468, 502
BciT130I CCWGG 5 cut(s) 33, 200, 304, 707, 908
BcnI CCSGG 7 cut(s) 70, 103, 104, 860, 869, 901, 902
BcoDI GTCTC 1 cut(s) 660
BisI GCNGC 5 cut(s) 235, 311, 344, 370, 544
BlsI GCNGC 5 cut(s) 236, 312, 345, 371, 545
Bme18I GGWCC 6 cut(s) 123, 196, 300, 865, 897, 904
BmeT110I CYCGRG 6 cut(s) 20, 56, 102, 743, 893, 900
BmgBI CACGTC 2 cut(s) 433, 456
BoxI GACNNNNGTC 1 cut(s) 645
BpuMI CCSGG 7 cut(s) 70, 103, 104, 860, 869, 901, 902
BsaJI CCNNGG 8 cut(s) 102, 116, 303, 706, 797, 892, 900, 940
Bsc4I CCNNNNNNNGG 8 cut(s) 102, 184, 244, 245, 269, 309, 907, 913
Bse118I RCCGGY 2 cut(s) 230, 421
Bse3DI GCAATG 1 cut(s) 486
BseBI CCWGG 5 cut(s) 33, 200, 304, 707, 908
BseDI CCNNGG 8 cut(s) 102, 116, 303, 706, 797, 892, 900, 940
BseGI GGATG 1 cut(s) 964
BseLI CCNNNNNNNGG 8 cut(s) 102, 184, 244, 245, 269, 309, 907, 913
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 2 cut(s) 584, 635
BseRI GAGGAG 1 cut(s) 481
BseSI GKGCMC 1 cut(s) 860
BseXI GCAGC 2 cut(s) 330, 356
Bsh1236I CGCG 7 cut(s) 506, 517, 519, 566, 639, 776, 880
Bsh1285I CGRYCG 2 cut(s) 497, 510
BshNI GGYRCC 1 cut(s) 248
BsiEI CGRYCG 2 cut(s) 497, 510
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 6 cut(s) 20, 56, 102, 743, 893, 900
BslFI GGGAC 6 cut(s) 2, 313, 614, 709, 883, 889
BslI CCNNNNNNNGG 8 cut(s) 102, 184, 244, 245, 269, 309, 907, 913
BsmAI GTCTC 1 cut(s) 660
BsmBI CGTCTC 1 cut(s) 660
BsmFI GGGAC 6 cut(s) 2, 313, 614, 709, 883, 889
BsoBI CYCGRG 6 cut(s) 20, 56, 102, 743, 893, 900
Bsp120I GGGCCC 1 cut(s) 856
Bsp1286I GDGCHC 2 cut(s) 51, 860
Bsp143I GATC 5 cut(s) 403, 507, 589, 660, 739
Bsp68I TCGCGA 1 cut(s) 506
BspCNI CTCAG 2 cut(s) 585, 634
BspFNI CGCG 7 cut(s) 506, 517, 519, 566, 639, 776, 880
BspHI TCATGA 1 cut(s) 951
BspPI GGATC 3 cut(s) 398, 411, 747
BspQI GCTCTTC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 248
BsrBI CCGCTC 3 cut(s) 310, 687, 728
BsrDI GCAATG 1 cut(s) 486
BsrFI RCCGGY 2 cut(s) 230, 421
BssAI RCCGGY 2 cut(s) 230, 421
BssECI CCNNGG 8 cut(s) 102, 116, 303, 706, 797, 892, 900, 940
BssMI GATC 5 cut(s) 403, 507, 589, 660, 739
BssT1I CCWWGG 1 cut(s) 940
Bst2UI CCWGG 5 cut(s) 33, 200, 304, 707, 908
Bst6I CTCTTC 2 cut(s) 39, 993
BstC8I GCNNGC 6 cut(s) 38, 260, 367, 477, 541, 703
BstDEI CTNAG 2 cut(s) 593, 621
BstDSI CCRYGG 1 cut(s) 116
BstEII GGTNACC 1 cut(s) 424
BstF5I GGATG 1 cut(s) 964
BstFNI CGCG 7 cut(s) 506, 517, 519, 566, 639, 776, 880
BstHHI GCGC 4 cut(s) 519, 568, 639, 776
BstKTI GATC 5 cut(s) 406, 510, 592, 663, 742
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 5 cut(s) 403, 507, 589, 660, 739
BstMCI CGRYCG 2 cut(s) 497, 510
BstMWI GCNNNNNNNGC 4 cut(s) 46, 127, 481, 490
BstNI CCWGG 5 cut(s) 33, 200, 304, 707, 908
BstPAI GACNNNNGTC 1 cut(s) 645
BstPI GGTNACC 1 cut(s) 424
BstSLI GKGCMC 1 cut(s) 860
BstUI CGCG 7 cut(s) 506, 517, 519, 566, 639, 776, 880
BstV1I GCAGC 2 cut(s) 330, 356
BstX2I RGATCY 2 cut(s) 403, 739
BstYI RGATCY 2 cut(s) 403, 739
BtgI CCRYGG 1 cut(s) 116
BtrI CACGTC 2 cut(s) 433, 456
BtsCI GGATG 1 cut(s) 964
BtsIMutI CAGTG 1 cut(s) 994
BtuMI TCGCGA 1 cut(s) 506
Cac8I GCNNGC 6 cut(s) 38, 260, 367, 477, 541, 703
CaiI CAGNNNCTG 1 cut(s) 215
CciI TCATGA 1 cut(s) 951
CfoI GCGC 4 cut(s) 519, 568, 639, 776
Cfr10I RCCGGY 2 cut(s) 230, 421
Cfr9I CCCGGG 2 cut(s) 102, 900
CpoI CGGWCCG 1 cut(s) 865
CseI GACGC 1 cut(s) 886
Csp6I GTAC 6 cut(s) 79, 172, 331, 415, 691, 925
CspI CGGWCCG 1 cut(s) 865
CviAII CATG 1 cut(s) 952
CviQI GTAC 6 cut(s) 79, 172, 331, 415, 691, 925
DdeI CTNAG 2 cut(s) 593, 621
DpnI GATC 5 cut(s) 405, 509, 591, 662, 741
DpnII GATC 5 cut(s) 403, 507, 589, 660, 739
EaeI YGGCCR 1 cut(s) 544
Eam1104I CTCTTC 2 cut(s) 39, 993
EarI CTCTTC 2 cut(s) 39, 993
EciI GGCGGA 1 cut(s) 738
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 940
Eco24I GRGCYC 2 cut(s) 51, 860
Eco47I GGWCC 6 cut(s) 123, 196, 300, 865, 897, 904
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 1017
Eco88I CYCGRG 6 cut(s) 20, 56, 102, 743, 893, 900
Eco91I GGTNACC 1 cut(s) 424
EcoICRI GAGCTC 1 cut(s) 49
EcoO109I RGGNCCY 3 cut(s) 300, 897, 904
EcoO65I GGTNACC 1 cut(s) 424
EcoRII CCWGG 5 cut(s) 31, 198, 302, 705, 906
EcoT14I CCWWGG 1 cut(s) 940
EcoT38I GRGCYC 2 cut(s) 51, 860
ErhI CCWWGG 1 cut(s) 940
Esp3I CGTCTC 1 cut(s) 660
FaeI CATG 1 cut(s) 955
FaiI YATR 1 cut(s) 953
FaqI GGGAC 6 cut(s) 2, 313, 614, 709, 883, 889
FatI CATG 1 cut(s) 951
FauI CCCGC 8 cut(s) 389, 468, 512, 532, 591, 680, 756, 926
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 5 cut(s) 235, 311, 344, 370, 544
FokI GGATG 1 cut(s) 971
FriOI GRGCYC 2 cut(s) 51, 860
Fsp4HI GCNGC 5 cut(s) 235, 311, 344, 370, 544
GlaI GCGC 4 cut(s) 518, 567, 638, 775
GluI GCNGC 5 cut(s) 235, 311, 344, 370, 544
HgaI GACGC 1 cut(s) 886
HhaI GCGC 4 cut(s) 519, 568, 639, 776
Hin1II CATG 1 cut(s) 955
Hin6I GCGC 4 cut(s) 517, 566, 637, 774
HinP1I GCGC 4 cut(s) 517, 566, 637, 774
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HinfI GANTC 8 cut(s) 28, 54, 273, 287, 322, 523, 619, 628
HphI GGTGA 9 cut(s) 143, 304, 400, 418, 670, 694, 850, 898, 922
Hpy166II GTNNAC 7 cut(s) 174, 442, 450, 532, 586, 618, 889
Hpy188I TCNGA 6 cut(s) 53, 594, 624, 665, 798, 922
Hpy188III TCNNGA 4 cut(s) 505, 632, 874, 952
Hpy8I GTNNAC 7 cut(s) 174, 442, 450, 532, 586, 618, 889
Hpy99I CGWCG 6 cut(s) 415, 434, 457, 490, 554, 644
HpyAV CCTTC 2 cut(s) 779, 949
HpyCH4IV ACGT 5 cut(s) 183, 413, 432, 455, 534
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 127, 481, 490
HpyF3I CTNAG 2 cut(s) 593, 621
HpySE526I ACGT 5 cut(s) 183, 413, 432, 455, 534
Hsp92II CATG 1 cut(s) 955
HspAI GCGC 4 cut(s) 517, 566, 637, 774
KflI GGGWCCC 1 cut(s) 897
Kzo9I GATC 5 cut(s) 403, 507, 589, 660, 739
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 4 cut(s) 307, 634, 710, 725
Lsp1109I GCAGC 2 cut(s) 330, 356
MaeII ACGT 5 cut(s) 183, 413, 432, 455, 534
MaeIII GTNAC 3 cut(s) 266, 424, 647
MalI GATC 5 cut(s) 405, 509, 591, 662, 741
MbiI CCGCTC 3 cut(s) 310, 687, 728
MboI GATC 5 cut(s) 403, 507, 589, 660, 739
MboII GAAGA 2 cut(s) 56, 1010
MflI RGATCY 2 cut(s) 403, 739
MhlI GDGCHC 2 cut(s) 51, 860
MluCI AATT 2 cut(s) 221, 974
MluI ACGCGT 1 cut(s) 878
MlyI GAGTC 5 cut(s) 48, 281, 532, 613, 637
MmeI TCCRAC 2 cut(s) 443, 717
MslI CAYNNNNRTG 1 cut(s) 431
MvaI CCWGG 5 cut(s) 33, 200, 304, 707, 908
MvnI CGCG 7 cut(s) 506, 517, 519, 566, 639, 776, 880
MwoI GCNNNNNNNGC 4 cut(s) 46, 127, 481, 490
NciI CCSGG 7 cut(s) 70, 103, 104, 860, 869, 901, 902
NdeII GATC 5 cut(s) 403, 507, 589, 660, 739
NlaIII CATG 1 cut(s) 955
NmeAIII GCCGAG 4 cut(s) 62, 288, 637, 874
NmuCI GTSAC 2 cut(s) 424, 647
NruI TCGCGA 1 cut(s) 506
OliI CACNNNNGTG 1 cut(s) 431
PaeR7I CTCGAG 1 cut(s) 56
PagI TCATGA 1 cut(s) 951
PciSI GCTCTTC 1 cut(s) 39
PcsI WCGNNNNNNNCGW 5 cut(s) 276, 282, 494, 503, 609
PfeI GAWTC 3 cut(s) 28, 273, 322
PkrI GCNGC 5 cut(s) 236, 312, 345, 371, 545
Ple19I CGATCG 1 cut(s) 510
PleI GAGTC 5 cut(s) 48, 281, 531, 613, 636
PpsI GAGTC 5 cut(s) 48, 281, 531, 613, 636
PpuMI RGGWCCY 3 cut(s) 300, 897, 904
PshAI GACNNNNGTC 1 cut(s) 645
Psp124BI GAGCTC 1 cut(s) 51
Psp5II RGGWCCY 3 cut(s) 300, 897, 904
Psp6I CCWGG 5 cut(s) 31, 198, 302, 705, 906
PspEI GGTNACC 1 cut(s) 424
PspGI CCWGG 5 cut(s) 31, 198, 302, 705, 906
PspOMI GGGCCC 1 cut(s) 856
PspPPI RGGWCCY 3 cut(s) 300, 897, 904
PspXI VCTCGAGB 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 2 cut(s) 403, 739
PvuI CGATCG 1 cut(s) 510
RruI TCGCGA 1 cut(s) 506
RsaI GTAC 6 cut(s) 80, 173, 332, 416, 692, 926
RsaNI GTAC 6 cut(s) 79, 172, 331, 415, 691, 925
RseI CAYNNNNRTG 1 cut(s) 431
Rsr2I CGGWCCG 1 cut(s) 865
RsrII CGGWCCG 1 cut(s) 865
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 39
SatI GCNGC 5 cut(s) 235, 311, 344, 370, 544
Sau3AI GATC 5 cut(s) 403, 507, 589, 660, 739
SchI GAGTC 5 cut(s) 48, 281, 532, 613, 637
SduI GDGCHC 2 cut(s) 51, 860
Sfr274I CTCGAG 1 cut(s) 56
SgrAI CRCCGGYG 1 cut(s) 230
SinI GGWCC 6 cut(s) 123, 196, 300, 865, 897, 904
SlaI CTCGAG 1 cut(s) 56
SmaI CCCGGG 2 cut(s) 104, 902
SmiMI CAYNNNNRTG 1 cut(s) 431
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 2 cut(s) 221, 974
SstI GAGCTC 1 cut(s) 51
StyI CCWWGG 1 cut(s) 940
TaiI ACGT 5 cut(s) 186, 416, 435, 458, 537
TaqI TCGA 6 cut(s) 57, 132, 285, 315, 488, 768
TasI AATT 2 cut(s) 221, 974
TauI GCSGC 3 cut(s) 237, 313, 546
TfiI GAWTC 3 cut(s) 28, 273, 322
TscAI CASTG 1 cut(s) 994
TseFI GTSAC 2 cut(s) 424, 647
TseI GCWGC 2 cut(s) 343, 369
Tsp45I GTSAC 2 cut(s) 424, 647
TspDTI ATGAA 2 cut(s) 940, 968
TspGWI ACGGA 3 cut(s) 66, 105, 285
TspMI CCCGGG 2 cut(s) 102, 900
TspRI CASTG 1 cut(s) 994
VpaK11BI GGWCC 6 cut(s) 123, 196, 300, 865, 897, 904
XhoI CTCGAG 1 cut(s) 56
XmaI CCCGGG 2 cut(s) 102, 900
XmiI GTMKAC 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.