pycom14g04170

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
3564057 .. 3565091
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g04170.1

Sequence Viewer

Length: 1035 bp
ATGCAAACGGCCGAGTTACTAACCGAGTTAATTCCCGGTCTGCCGGAAGAACTCGGATACGAGTGCCTGACCCGTCTGCACTATTCCACTCACCGAGTCGCCTCCCGAGTCTGCCGCCGATGGCAGCACCTTGTCCAAAGTCGGGAATTTCATAACCACAGGAAGCAATCCGGGCGGACCCACAAGGCGGCTTGCCTGGTCCAGGCTCTTCCGGTTCAGACCGGATCGTACGAGGCCAAACCGGCTAAACCGCCTGGTTATGGGGTCTCCATTTTTGACTCTGTGAGTGGGAATTGGGACCGATCGATCGACCCGGTTCCGAAGTACCCGCACGGGCTTCCGATGTTCTGTCAGGTGACAGGCTCGGAGGGGAAGCTGGTGGTGATGGGCGGGTGGGACCCGTCGAATTACCAGCCGATTCGGGACGTGTTTGTGTACGAGTTCACGACTCAGCGGTGGACTCGGGGGAAGGACATGCCCGAGACCCGGTCGTTCTTCGCCGCCTGCGAGCTAAACGGGCGGATATACATCGCCGGCGGCCACGACGAAAACAAGAACGCGATGAAATCGGCGAGGGTTTACGATGTGAGGGAGAACGAATGGAGCGAGCTGACCGAGATGAGTCAGGGCCGAGACGAGTGCGAGGGGTTCGTATCCGGGTCGGAGTTTTGGGTCGTCAGCGGGTACGCGACGGACATGCAAGGGAGGTTCGTGGGGAGTGCGGAGATCTATGAAACCGGGTCGGGTCGGTGGAGGCTGGAGGAGGACGTGTGGCGGGCGGGTCAGTGCCCGAGGTCGTGCGTCGGGGTTGGGAAAGACGGGAAGTTCTTCTGTTGGGGTGACTGCGATCCGAGAGTCCGGGTCGGGCCTTGCGCGCTCGAGTTGGGGAAATGGTCCTTTTTGGCGGGGTCGGCTTACCAGGGAGCGTCGCAGGGGGTCTTTTTGGTGGAAGGGCAGAATGGTAAATTGAAGAAAATGGAAACGTCCGAGGAGTTCTCTGGGTTCGTGCAGTCCGGGTGCCGCGTGGAGGTTTGA

Protein Analysis

345

Amino Acids

38.59

Weight (kDa)

6.28

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 52 3.4e-06 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 91 - 252 3.3e-13 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 91 - 204 1.2e-09 FBX42, beta-propeller domain
Kelch_FKB95 PF25210 105 - 267 5.3e-13 FKB95, Kelch-repeats domain
Kelch_1 PF01344 118 - 160 7.8e-08 Kelch motif
Beta-prop_TYW4 PF13418 121 - 209 5.7e-06 tRNA wybutosine-synthesizing protein 4, beta-propeller
Beta-prop_ATRN-LZTR1 PF24981 123 - 235 2.7e-08 Attractin/LZTR1 beta-propeller
Beta-prop_Calicin PF13964 127 - 228 2.3e-11 Calicin, beta-propeller domain
Kelch_1 PF01344 163 - 208 1.4e-12 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1017
AccII CGCG 4 cut(s) 560, 689, 875, 1023
AclWI GGATC 2 cut(s) 232, 842
AcoI YGGCCR 2 cut(s) 9, 538
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 4 cut(s) 230, 326, 437, 686
AfiI CCNNNNNNNGG 6 cut(s) 142, 187, 202, 260, 486, 1027
AflIII ACRYGT 2 cut(s) 426, 768
AgsI TTSAA 1 cut(s) 970
AjiI CACGTC 2 cut(s) 427, 769
AjnI CCWGG 4 cut(s) 195, 201, 253, 918
AluBI AGCT 3 cut(s) 376, 511, 610
AluI AGCT 3 cut(s) 376, 511, 610
Alw26I GTCTC 3 cut(s) 271, 476, 627
AlwI GGATC 2 cut(s) 232, 842
Ama87I CYCGRG 5 cut(s) 105, 462, 479, 790, 878
AoxI GGCC 5 cut(s) 9, 234, 538, 628, 866
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 146
Asp700I GAANNNNTTC 1 cut(s) 827
AspLEI GCGC 2 cut(s) 875, 877
AspS9I GGNCC 7 cut(s) 177, 199, 298, 397, 628, 866, 894
AsuC2I CCSGG 8 cut(s) 36, 172, 314, 487, 658, 739, 860, 1015
AsuHPI GGTGA 4 cut(s) 83, 367, 394, 851
AvaI CYCGRG 5 cut(s) 105, 462, 479, 790, 878
AvaII GGWCC 5 cut(s) 177, 199, 298, 397, 894
BaeGI GKGCMC 1 cut(s) 791
BanI GGYRCC 1 cut(s) 1017
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 114, 379
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 4 cut(s) 621, 655, 679, 713
BciT130I CCWGG 4 cut(s) 197, 203, 255, 920
BciVI GTATCC 2 cut(s) 50, 664
BcnI CCSGG 8 cut(s) 36, 172, 314, 487, 658, 739, 860, 1015
BcoDI GTCTC 3 cut(s) 271, 476, 627
BfuI GTATCC 2 cut(s) 50, 664
BglI GCCNNNNNGGC 1 cut(s) 242
BglII AGATCT 1 cut(s) 726
BisI GCNGC 6 cut(s) 115, 125, 189, 501, 538, 1021
BlsI GCNGC 6 cut(s) 116, 126, 190, 502, 539, 1022
Bme18I GGWCC 5 cut(s) 177, 199, 298, 397, 894
BmeT110I CYCGRG 5 cut(s) 105, 462, 479, 790, 878
BmgBI CACGTC 2 cut(s) 427, 769
BmgT120I GGNCC 7 cut(s) 177, 199, 298, 397, 628, 866, 894
BmiI GGNNCC 6 cut(s) 179, 299, 318, 398, 399, 1019
BplI GAGNNNNNCTC 2 cut(s) 980, 1012
BpmI CTGGAG 1 cut(s) 779
BpuMI CCSGG 8 cut(s) 36, 172, 314, 487, 658, 739, 860, 1015
Bsa29I ATCGAT 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 527
BsaI GGTCTC 2 cut(s) 271, 476
BsaJI CCNNGG 3 cut(s) 791, 919, 987
BsaWI WCCGGW 2 cut(s) 211, 221
BsaXI ACNNNNNCTCC 2 cut(s) 755, 785
Bsc4I CCNNNNNNNGG 6 cut(s) 142, 187, 202, 260, 486, 1027
Bse118I RCCGGY 2 cut(s) 241, 533
Bse8I GATNNNNATC 1 cut(s) 527
BseBI CCWGG 4 cut(s) 197, 203, 255, 920
BseCI ATCGAT 1 cut(s) 305
BseDI CCNNGG 3 cut(s) 791, 919, 987
BseJI GATNNNNATC 1 cut(s) 527
BseLI CCNNNNNNNGG 6 cut(s) 142, 187, 202, 260, 486, 1027
BseMII CTCAG 1 cut(s) 464
BsePI GCGCGC 1 cut(s) 873
BseRI GAGGAG 2 cut(s) 776, 1004
BseSI GKGCMC 1 cut(s) 791
BseX3I CGGCCG 1 cut(s) 9
BseXI GCAGC 1 cut(s) 136
BsgI GTGCAG 2 cut(s) 62, 1028
Bsh1236I CGCG 4 cut(s) 560, 689, 875, 1023
Bsh1285I CGRYCG 4 cut(s) 12, 305, 309, 491
BshFI GGCC 5 cut(s) 11, 236, 540, 630, 868
BshNI GGYRCC 1 cut(s) 1017
BshVI ATCGAT 1 cut(s) 305
BsiEI CGRYCG 4 cut(s) 12, 305, 309, 491
BsiHKCI CYCGRG 5 cut(s) 105, 462, 479, 790, 878
BsiWI CGTACG 1 cut(s) 228
BslFI GGGAC 3 cut(s) 311, 410, 437
BslI CCNNNNNNNGG 6 cut(s) 142, 187, 202, 260, 486, 1027
BsmAI GTCTC 3 cut(s) 271, 476, 627
BsmBI CGTCTC 1 cut(s) 627
BsmFI GGGAC 3 cut(s) 311, 410, 437
BsnI GGCC 5 cut(s) 11, 236, 540, 630, 868
Bso31I GGTCTC 2 cut(s) 271, 476
BsoBI CYCGRG 5 cut(s) 105, 462, 479, 790, 878
Bsp1286I GDGCHC 1 cut(s) 791
Bsp143I GATC 5 cut(s) 224, 302, 306, 726, 847
BspANI GGCC 5 cut(s) 11, 236, 540, 630, 868
BspCNI CTCAG 1 cut(s) 463
BspDI ATCGAT 1 cut(s) 305
BspFNI CGCG 4 cut(s) 560, 689, 875, 1023
BspLI GGNNCC 6 cut(s) 179, 299, 318, 398, 399, 1019
BspPI GGATC 2 cut(s) 232, 842
BspQI GCTCTTC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 1017
BspTNI GGTCTC 2 cut(s) 271, 476
BsrFI RCCGGY 2 cut(s) 241, 533
BssAI RCCGGY 2 cut(s) 241, 533
BssECI CCNNGG 3 cut(s) 791, 919, 987
BssHII GCGCGC 1 cut(s) 873
BssMI GATC 5 cut(s) 224, 302, 306, 726, 847
Bst2UI CCWGG 4 cut(s) 197, 203, 255, 920
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 7 cut(s) 193, 505, 509, 535, 608, 777, 875
BstDEI CTNAG 1 cut(s) 450
BstENI CCTNNNNNAGG 1 cut(s) 200
BstFNI CGCG 4 cut(s) 560, 689, 875, 1023
BstHHI GCGC 2 cut(s) 875, 877
BstKTI GATC 5 cut(s) 227, 305, 309, 729, 850
BstMAI GTCTC 3 cut(s) 271, 476, 627
BstMBI GATC 5 cut(s) 224, 302, 306, 726, 847
BstMCI CGRYCG 4 cut(s) 12, 305, 309, 491
BstMWI GCNNNNNNNGC 5 cut(s) 172, 242, 517, 874, 911
BstNI CCWGG 4 cut(s) 197, 203, 255, 920
BstNSI RCATGY 2 cut(s) 478, 700
BstSLI GKGCMC 1 cut(s) 791
BstUI CGCG 4 cut(s) 560, 689, 875, 1023
BstV1I GCAGC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 726
BstYI RGATCY 1 cut(s) 726
BstZI CGGCCG 1 cut(s) 9
Bsu15I ATCGAT 1 cut(s) 305
BsuI GTATCC 2 cut(s) 50, 664
BsuRI GGCC 5 cut(s) 11, 236, 540, 630, 868
BsuTUI ATCGAT 1 cut(s) 305
BtgZI GCGATG 2 cut(s) 514, 575
BtrI CACGTC 2 cut(s) 427, 769
BtsIMutI CAGTG 1 cut(s) 791
Cac8I GCNNGC 7 cut(s) 193, 505, 509, 535, 608, 777, 875
CfoI GCGC 2 cut(s) 875, 877
Cfr10I RCCGGY 2 cut(s) 241, 533
Cfr13I GGNCC 7 cut(s) 177, 199, 298, 397, 628, 866, 894
ClaI ATCGAT 1 cut(s) 305
CseI GACGC 2 cut(s) 790, 915
Csp6I GTAC 4 cut(s) 229, 325, 436, 685
CviAII CATG 2 cut(s) 475, 697
CviQI GTAC 4 cut(s) 229, 325, 436, 685
DdeI CTNAG 1 cut(s) 450
DpnI GATC 5 cut(s) 226, 304, 308, 728, 849
DpnII GATC 5 cut(s) 224, 302, 306, 726, 847
EaeI YGGCCR 2 cut(s) 9, 538
EagI CGGCCG 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 2 cut(s) 190, 535
EclXI CGGCCG 1 cut(s) 9
Eco31I GGTCTC 2 cut(s) 271, 476
Eco47I GGWCC 5 cut(s) 177, 199, 298, 397, 894
Eco52I CGGCCG 1 cut(s) 9
Eco88I CYCGRG 5 cut(s) 105, 462, 479, 790, 878
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 397
EcoRII CCWGG 4 cut(s) 195, 201, 253, 918
Esp3I CGTCTC 1 cut(s) 627
FaeI CATG 2 cut(s) 478, 700
FaiI YATR 6 cut(s) 153, 261, 476, 526, 698, 732
FaqI GGGAC 3 cut(s) 311, 410, 437
FatI CATG 2 cut(s) 474, 696
FauI CCCGC 6 cut(s) 336, 383, 674, 768, 772, 898
Fnu4HI GCNGC 6 cut(s) 115, 125, 189, 501, 538, 1021
Fsp4HI GCNGC 6 cut(s) 115, 125, 189, 501, 538, 1021
GlaI GCGC 2 cut(s) 874, 876
GluI GCNGC 6 cut(s) 115, 125, 189, 501, 538, 1021
GsuI CTGGAG 1 cut(s) 779
HaeIII GGCC 5 cut(s) 11, 236, 540, 630, 868
HgaI GACGC 2 cut(s) 790, 915
HhaI GCGC 2 cut(s) 875, 877
Hin1II CATG 2 cut(s) 478, 700
Hin6I GCGC 2 cut(s) 873, 875
HinP1I GCGC 2 cut(s) 873, 875
HinfI GANTC 8 cut(s) 96, 108, 278, 418, 448, 460, 622, 855
HphI GGTGA 4 cut(s) 83, 367, 394, 851
Hpy166II GTNNAC 4 cut(s) 436, 444, 459, 580
Hpy188I TCNGA 8 cut(s) 56, 219, 321, 342, 367, 664, 852, 988
Hpy188III TCNNGA 4 cut(s) 105, 143, 422, 445
Hpy8I GTNNAC 4 cut(s) 436, 444, 459, 580
Hpy99I CGWCG 5 cut(s) 406, 548, 694, 806, 931
HpyAV CCTTC 2 cut(s) 463, 944
HpyCH4IV ACGT 3 cut(s) 426, 768, 983
HpyCH4V TGCA 4 cut(s) 4, 79, 700, 1009
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 242, 517, 874, 911
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 3 cut(s) 426, 768, 983
Hsp92II CATG 2 cut(s) 478, 700
HspAI GCGC 2 cut(s) 873, 875
KflI GGGWCCC 1 cut(s) 397
KroI GCCGGC 1 cut(s) 533
KroNI GCCGGC 1 cut(s) 535
Kzo9I GATC 5 cut(s) 224, 302, 306, 726, 847
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 2 cut(s) 603, 923
Lsp1109I GCAGC 1 cut(s) 136
MaeII ACGT 3 cut(s) 426, 768, 983
MaeIII GTNAC 3 cut(s) 15, 355, 839
MalI GATC 5 cut(s) 226, 304, 308, 728, 849
MboI GATC 5 cut(s) 224, 302, 306, 726, 847
MboII GAAGA 5 cut(s) 59, 200, 487, 820, 982
MflI RGATCY 1 cut(s) 726
MhlI GDGCHC 1 cut(s) 791
MluCI AATT 5 cut(s) 30, 146, 292, 406, 965
MlyI GAGTC 7 cut(s) 105, 117, 272, 442, 454, 631, 864
MmeI TCCRAC 1 cut(s) 642
MreI CGCCGGCG 1 cut(s) 533
MroNI GCCGGC 1 cut(s) 533
MroXI GAANNNNTTC 1 cut(s) 827
MseI TTAA 1 cut(s) 29
MspA1I CMGCKG 2 cut(s) 454, 681
MvaI CCWGG 4 cut(s) 197, 203, 255, 920
MvnI CGCG 4 cut(s) 560, 689, 875, 1023
MwoI GCNNNNNNNGC 5 cut(s) 172, 242, 517, 874, 911
NaeI GCCGGC 1 cut(s) 535
NciI CCSGG 8 cut(s) 36, 172, 314, 487, 658, 739, 860, 1015
NdeII GATC 5 cut(s) 224, 302, 306, 726, 847
NgoMIV GCCGGC 1 cut(s) 533
NlaIII CATG 2 cut(s) 478, 700
NlaIV GGNNCC 6 cut(s) 179, 299, 318, 398, 399, 1019
NmeAIII GCCGAG 2 cut(s) 37, 656
NmuCI GTSAC 2 cut(s) 355, 839
NspI RCATGY 2 cut(s) 478, 700
PaeR7I CTCGAG 1 cut(s) 878
PauI GCGCGC 1 cut(s) 873
PciSI GCTCTTC 1 cut(s) 213
PcsI WCGNNNNNNNCGW 2 cut(s) 504, 603
PdiI GCCGGC 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 827
PfeI GAWTC 1 cut(s) 418
Pfl23II CGTACG 1 cut(s) 228
PflFI GACNNNGTC 1 cut(s) 487
PkrI GCNGC 6 cut(s) 116, 126, 190, 502, 539, 1022
Ple19I CGATCG 2 cut(s) 305, 309
PleI GAGTC 7 cut(s) 104, 116, 272, 442, 454, 630, 863
PpsI GAGTC 7 cut(s) 104, 116, 272, 442, 454, 630, 863
PpuMI RGGWCCY 1 cut(s) 397
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 4 cut(s) 195, 201, 253, 918
PspGI CCWGG 4 cut(s) 195, 201, 253, 918
PspLI CGTACG 1 cut(s) 228
PspN4I GGNNCC 6 cut(s) 179, 299, 318, 398, 399, 1019
PspPI GGNCC 7 cut(s) 177, 199, 298, 397, 628, 866, 894
PspPPI RGGWCCY 1 cut(s) 397
PspXI VCTCGAGB 1 cut(s) 878
PsuI RGATCY 1 cut(s) 726
PsyI GACNNNGTC 1 cut(s) 487
PteI GCGCGC 1 cut(s) 873
PvuI CGATCG 2 cut(s) 305, 309
RsaI GTAC 4 cut(s) 230, 326, 437, 686
RsaNI GTAC 4 cut(s) 229, 325, 436, 685
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 6 cut(s) 115, 125, 189, 501, 538, 1021
Sau3AI GATC 5 cut(s) 224, 302, 306, 726, 847
Sau96I GGNCC 7 cut(s) 177, 199, 298, 397, 628, 866, 894
SchI GAGTC 7 cut(s) 105, 117, 272, 442, 454, 631, 864
SduI GDGCHC 1 cut(s) 791
Sfr274I CTCGAG 1 cut(s) 878
SgrAI CRCCGGYG 1 cut(s) 533
SinI GGWCC 5 cut(s) 177, 199, 298, 397, 894
SlaI CTCGAG 1 cut(s) 878
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
Sse9I AATT 5 cut(s) 30, 146, 292, 406, 965
TaiI ACGT 3 cut(s) 429, 771, 986
TaqI TCGA 4 cut(s) 305, 309, 404, 879
TaqII GACCGA 2 cut(s) 315, 629
TasI AATT 5 cut(s) 30, 146, 292, 406, 965
TauI GCSGC 5 cut(s) 117, 191, 503, 540, 1023
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 791
TseFI GTSAC 2 cut(s) 355, 839
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 2 cut(s) 355, 839
TspDTI ATGAA 3 cut(s) 140, 578, 747
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 1 cut(s) 791
Tth111I GACNNNGTC 1 cut(s) 487
VpaK11BI GGWCC 5 cut(s) 177, 199, 298, 397, 894
XagI CCTNNNNNAGG 1 cut(s) 200
XapI RAATTY 1 cut(s) 146
XceI RCATGY 2 cut(s) 478, 700
XhoI CTCGAG 1 cut(s) 878
XmnI GAANNNNTTC 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.