Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026666.1

Orthogroup ID

OG0003364

Physical Location & Seq

Genomic Coordinates Reverse (-)

1406 .. 2446

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026666.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atggggattcctaaagtccccgagtggattccgggcctgccggaagagctgggcctcgagtgcctgacccggcttccgtactcggcccaccccaccgcctcccgggtctgccgtccgtggcggtccttgctcgaaagcgaggagttctatcgccacaggaagcagagcgggtacacccgaaacgtggcgtgcttggtccaggccgttgcagctgccgtggaattgaacgcgggccccaaaccgggtgccggaggctcgccgagttacggaatcgccgtgttcgactcggtgagtgggacctgggagcggctcgacccgattcccaagtacccgaatgggctgccgatgttttgtcgggtggcgagctgcgagggcaagctggtggtgatgggcgggtgggatccggcgacgtacaagccggtcaccgacgtgttcgtttacgagtttacgacgtgtcgttggaggaggggggcggcaatgccgtcgaagaggtcgtttttcgcgatcgggtcgcgcgggagtcgggtttatattgcgggcgggcacgacgagagcaagaacgcgctgaaatcggcgtgggtttacgatctgaggcgggacgagtgggccgagttgactcagatgagtcgggagcgggacgagtgtcacggggtggtgatcggggacgagttctgggtggtgagcgggtacgggacggcgagccagggagcgtttgagggcggagcggaggcgttggacctcgggtcgggtcggtggaggcgggtcgagggcgcgtgggaggaaggggagtgtccgagggcgtgtgggggtggagttgggagagatgggaggctggtgagttgggccgagttaggcccggcggtccgggtcgggacccgtggggtgaatctcgggtcccgggtcctggtgatgggttcggagtacgatggcgggagccaaggggtattcatgaaggatgggcaaaacggtaaattagagagggttagcgtgcctgaagagttttctgggtttattcagtcaggctgttgcgttgagatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0019222 GO:0031323 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

346

Amino Acids

37.68

Weight (kDa)

6.19

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44130 AT3G59940
fragaria_vesca	FvH4_3g45300 FvH4_6g21491
malus_domestica	MD03G1006500.v1.1 MD11G1009500.v1.1 MD12G1051200.v1.1 MD14G1050600.v1.1
prunus_persica	Prupe.6G006200_v2.0.a1 Prupe.7G085300_v2.0.a1
pyrus_communis	pycom03g00690 pycom11g00610 pycom12g04560 pycom14g04170
rosa_chinensis	RchiOBHm_Chr3g0478681 RchiOBHm_Chr5g0082971
rosa_laevigata	RLG00000023633 RLG00000037006
rosa_multiflora	Rmu_co7966478.1_g000001 Rmu_sc0002454.1_g000004 Rmu_sc0008074.1_g000020 Rmu_sc0026666.1_g000001 Rmu_sc0026667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403200
rosa_rugosa	Rorug03G0166900 Rorug05G0481800
rosa_samantha	Rh3AG219200 Rh3BG250900 Rh3CG247700 Rh3DG244000 Rh5AG531400 Rh5BG558400 Rh5CG581300 Rh5DG567200
rosa_wichuraiana	Rw3G019710 Rw5G049720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AccBSI	CCGCTC	5 cut(s)	168, 307, 634, 684, 725
AccII	CGCG	6 cut(s)	230, 503, 514, 516, 563, 773
AclWI	GGATC	2 cut(s)	395, 408
AcuI	CTGAAG	1 cut(s)	1014
AdeI	CACNNNGTG	1 cut(s)	652
AfaI	GTAC	6 cut(s)	80, 173, 329, 413, 689, 923
AflIII	ACRYGT	2 cut(s)	429, 452
AgsI	TTSAA	1 cut(s)	226
AhdI	GACNNNNNGTC	1 cut(s)	742
AjiI	CACGTC	2 cut(s)	430, 453
AjnI	CCWGG	4 cut(s)	198, 299, 702, 903
AleI	CACNNNNGTG	1 cut(s)	428
AluBI	AGCT	4 cut(s)	49, 212, 366, 379
AluI	AGCT	4 cut(s)	49, 212, 366, 379
AlwI	GGATC	2 cut(s)	395, 408
Ama87I	CYCGRG	6 cut(s)	20, 56, 102, 740, 890, 897
AoxI	GGCC	8 cut(s)	34, 52, 84, 201, 232, 606, 843, 853
ApaI	GGGCCC	1 cut(s)	236
ApeKI	GCWGC	4 cut(s)	209, 212, 340, 366
AspLEI	GCGC	3 cut(s)	516, 565, 773
AsuC2I	CCSGG	9 cut(s)	33, 70, 103, 104, 243, 857, 866, 898, 899
AsuHPI	GGTGA	8 cut(s)	301, 397, 415, 667, 691, 847, 895, 919
AvaI	CYCGRG	6 cut(s)	20, 56, 102, 740, 890, 897
AvaII	GGWCC	8 cut(s)	123, 196, 297, 736, 862, 873, 894, 901
BaeGI	GKGCMC	2 cut(s)	236, 546
BamHI	GGATCC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	236
BbvI	GCAGC	4 cut(s)	199, 221, 327, 353
BccI	CCATC	5 cut(s)	382, 818, 904, 920, 950
BceAI	ACGGC	6 cut(s)	96, 188, 200, 260, 466, 711
BcgI	CGANNNNNNTGC	4 cut(s)	322, 356, 465, 499
BciT130I	CCWGG	4 cut(s)	200, 301, 704, 905
BcnI	CCSGG	9 cut(s)	33, 70, 103, 104, 243, 857, 866, 898, 899
BisI	GCNGC	6 cut(s)	210, 213, 308, 341, 367, 474
BlsI	GCNGC	6 cut(s)	211, 214, 309, 342, 368, 475
Bme18I	GGWCC	8 cut(s)	123, 196, 297, 736, 862, 873, 894, 901
BmeRI	GACNNNNNGTC	1 cut(s)	742
BmeT110I	CYCGRG	6 cut(s)	20, 56, 102, 740, 890, 897
BmgBI	CACGTC	2 cut(s)	430, 453
BoxI	GACNNNNGTC	1 cut(s)	642
BpuMI	CCSGG	9 cut(s)	33, 70, 103, 104, 243, 857, 866, 898, 899
Bse118I	RCCGGY	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	4 cut(s)	200, 301, 704, 905
BseGI	GGATG	1 cut(s)	961
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	2 cut(s)	581, 632
BseRI	GAGGAG	2 cut(s)	155, 478
BseSI	GKGCMC	2 cut(s)	236, 546
BseXI	GCAGC	4 cut(s)	199, 221, 327, 353
BseYI	CCCAGC	1 cut(s)	49
Bsh1236I	CGCG	6 cut(s)	230, 503, 514, 516, 563, 773
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	8 cut(s)	36, 54, 86, 203, 234, 608, 845, 855
BshNI	GGYRCC	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	507
BsiHKCI	CYCGRG	6 cut(s)	20, 56, 102, 740, 890, 897
BslFI	GGGAC	8 cut(s)	2, 310, 611, 650, 677, 706, 880, 886
BsmFI	GGGAC	8 cut(s)	2, 310, 611, 650, 677, 706, 880, 886
BsnI	GGCC	8 cut(s)	36, 54, 86, 203, 234, 608, 845, 855
BsoBI	CYCGRG	6 cut(s)	20, 56, 102, 740, 890, 897
Bsp120I	GGGCCC	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	236, 546
Bsp143I	GATC	4 cut(s)	400, 504, 586, 657
Bsp68I	TCGCGA	1 cut(s)	503
BspANI	GGCC	8 cut(s)	36, 54, 86, 203, 234, 608, 845, 855
BspCNI	CTCAG	2 cut(s)	582, 631
BspFNI	CGCG	6 cut(s)	230, 503, 514, 516, 563, 773
BspHI	TCATGA	1 cut(s)	948
BspPI	GGATC	2 cut(s)	395, 408
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	245
BsrBI	CCGCTC	5 cut(s)	168, 307, 634, 684, 725
BsrDI	GCAATG	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	418
BssAI	RCCGGY	1 cut(s)	418
BssMI	GATC	4 cut(s)	400, 504, 586, 657
BssT1I	CCWWGG	1 cut(s)	937
Bst2UI	CCWGG	4 cut(s)	200, 301, 704, 905
Bst4CI	ACNGT	1 cut(s)	968
Bst6I	CTCTTC	3 cut(s)	39, 482, 990
BstDEI	CTNAG	2 cut(s)	590, 618
BstDSI	CCRYGG	3 cut(s)	116, 216, 877
BstEII	GGTNACC	1 cut(s)	421
BstF5I	GGATG	1 cut(s)	961
BstFNI	CGCG	6 cut(s)	230, 503, 514, 516, 563, 773
BstHHI	GCGC	3 cut(s)	516, 565, 773
BstKTI	GATC	4 cut(s)	403, 507, 589, 660
BstMBI	GATC	4 cut(s)	400, 504, 586, 657
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 60, 127, 209, 372
BstNI	CCWGG	4 cut(s)	200, 301, 704, 905
BstPAI	GACNNNNGTC	1 cut(s)	642
BstPI	GGTNACC	1 cut(s)	421
BstSLI	GKGCMC	2 cut(s)	236, 546
BstUI	CGCG	6 cut(s)	230, 503, 514, 516, 563, 773
BstV1I	GCAGC	4 cut(s)	199, 221, 327, 353
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	8 cut(s)	36, 54, 86, 203, 234, 608, 845, 855
BtgI	CCRYGG	3 cut(s)	116, 216, 877
BtrI	CACGTC	2 cut(s)	430, 453
BtsCI	GGATG	1 cut(s)	961
BtuMI	TCGCGA	1 cut(s)	503
CciI	TCATGA	1 cut(s)	948
CfoI	GCGC	3 cut(s)	516, 565, 773
Cfr10I	RCCGGY	1 cut(s)	418
Cfr9I	CCCGGG	2 cut(s)	102, 897
CpoI	CGGWCCG	1 cut(s)	862
Csp6I	GTAC	6 cut(s)	79, 172, 328, 412, 688, 922
CspI	CGGWCCG	1 cut(s)	862
CviAII	CATG	1 cut(s)	949
CviQI	GTAC	6 cut(s)	79, 172, 328, 412, 688, 922
DdeI	CTNAG	2 cut(s)	590, 618
DpnI	GATC	4 cut(s)	402, 506, 588, 659
DpnII	GATC	4 cut(s)	400, 504, 586, 657
DraIII	CACNNNGTG	1 cut(s)	652
DriI	GACNNNNNGTC	1 cut(s)	742
Eam1104I	CTCTTC	3 cut(s)	39, 482, 990
Eam1105I	GACNNNNNGTC	1 cut(s)	742
EarI	CTCTTC	3 cut(s)	39, 482, 990
EciI	GGCGGA	1 cut(s)	735
Eco130I	CCWWGG	1 cut(s)	937
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	8 cut(s)	123, 196, 297, 736, 862, 873, 894, 901
Eco57I	CTGAAG	1 cut(s)	1014
Eco88I	CYCGRG	6 cut(s)	20, 56, 102, 740, 890, 897
Eco91I	GGTNACC	1 cut(s)	421
EcoO109I	RGGNCCY	5 cut(s)	233, 297, 873, 894, 901
EcoO65I	GGTNACC	1 cut(s)	421
EcoRII	CCWGG	4 cut(s)	198, 299, 702, 903
EcoT14I	CCWWGG	1 cut(s)	937
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	937
FaeI	CATG	1 cut(s)	952
FaiI	YATR	2 cut(s)	531, 950
FaqI	GGGAC	8 cut(s)	2, 310, 611, 650, 677, 706, 880, 886
FatI	CATG	1 cut(s)	948
Fnu4HI	GCNGC	6 cut(s)	210, 213, 308, 341, 367, 474
FokI	GGATG	1 cut(s)	968
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	6 cut(s)	210, 213, 308, 341, 367, 474
GlaI	GCGC	3 cut(s)	515, 564, 772
GluI	GCNGC	6 cut(s)	210, 213, 308, 341, 367, 474
GsaI	CCCAGC	1 cut(s)	53
HaeIII	GGCC	8 cut(s)	36, 54, 86, 203, 234, 608, 845, 855
HhaI	GCGC	3 cut(s)	516, 565, 773
Hin1II	CATG	1 cut(s)	952
Hin6I	GCGC	3 cut(s)	514, 563, 771
HinP1I	GCGC	3 cut(s)	514, 563, 771
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HinfI	GANTC	9 cut(s)	7, 28, 270, 284, 319, 520, 616, 625, 886
HphI	GGTGA	8 cut(s)	301, 397, 415, 667, 691, 847, 895, 919
Hpy166II	GTNNAC	5 cut(s)	174, 439, 447, 583, 615
Hpy188I	TCNGA	4 cut(s)	591, 621, 795, 919
Hpy188III	TCNNGA	4 cut(s)	502, 629, 871, 949
Hpy8I	GTNNAC	5 cut(s)	174, 439, 447, 583, 615
Hpy99I	CGWCG	5 cut(s)	412, 431, 454, 487, 551
HpyAV	CCTTC	2 cut(s)	776, 946
HpyCH4III	ACNGT	1 cut(s)	968
HpyCH4IV	ACGT	4 cut(s)	183, 410, 429, 452
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 60, 127, 209, 372
HpyF3I	CTNAG	2 cut(s)	590, 618
HpySE526I	ACGT	4 cut(s)	183, 410, 429, 452
Hsp92II	CATG	1 cut(s)	952
HspAI	GCGC	3 cut(s)	514, 563, 771
KflI	GGGWCCC	2 cut(s)	873, 894
Kzo9I	GATC	4 cut(s)	400, 504, 586, 657
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	5 cut(s)	304, 631, 707, 722, 933
Lsp1109I	GCAGC	4 cut(s)	199, 221, 327, 353
MaeII	ACGT	4 cut(s)	183, 410, 429, 452
MaeIII	GTNAC	3 cut(s)	263, 421, 644
MalI	GATC	4 cut(s)	402, 506, 588, 659
MbiI	CCGCTC	5 cut(s)	168, 307, 634, 684, 725
MboI	GATC	4 cut(s)	400, 504, 586, 657
MboII	GAAGA	3 cut(s)	56, 499, 1007
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	236, 546
MluCI	AATT	2 cut(s)	221, 971
MlyI	GAGTC	4 cut(s)	278, 529, 610, 634
MmeI	TCCRAC	2 cut(s)	440, 714
MslI	CAYNNNNRTG	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	212
MvaI	CCWGG	4 cut(s)	200, 301, 704, 905
MvnI	CGCG	6 cut(s)	230, 503, 514, 516, 563, 773
MwoI	GCNNNNNNNGC	5 cut(s)	46, 60, 127, 209, 372
NciI	CCSGG	9 cut(s)	33, 70, 103, 104, 243, 857, 866, 898, 899
NdeII	GATC	4 cut(s)	400, 504, 586, 657
NlaIII	CATG	1 cut(s)	952
NmeAIII	GCCGAG	4 cut(s)	62, 285, 634, 871
NmuCI	GTSAC	2 cut(s)	421, 644
NruI	TCGCGA	1 cut(s)	503
OliI	CACNNNNGTG	1 cut(s)	428
PaeR7I	CTCGAG	1 cut(s)	56
PagI	TCATGA	1 cut(s)	948
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	5 cut(s)	273, 279, 491, 500, 606
PfeI	GAWTC	5 cut(s)	7, 28, 270, 319, 886
PkrI	GCNGC	6 cut(s)	211, 214, 309, 342, 368, 475
Ple19I	CGATCG	1 cut(s)	507
PleI	GAGTC	4 cut(s)	278, 528, 610, 633
PpsI	GAGTC	4 cut(s)	278, 528, 610, 633
PpuMI	RGGWCCY	4 cut(s)	297, 873, 894, 901
PshAI	GACNNNNGTC	1 cut(s)	642
Psp5II	RGGWCCY	4 cut(s)	297, 873, 894, 901
Psp6I	CCWGG	4 cut(s)	198, 299, 702, 903
PspEI	GGTNACC	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	4 cut(s)	198, 299, 702, 903
PspOMI	GGGCCC	1 cut(s)	232
PspPPI	RGGWCCY	4 cut(s)	297, 873, 894, 901
PspXI	VCTCGAGB	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	400
PvuI	CGATCG	1 cut(s)	507
PvuII	CAGCTG	1 cut(s)	212
RruI	TCGCGA	1 cut(s)	503
RsaI	GTAC	6 cut(s)	80, 173, 329, 413, 689, 923
RsaNI	GTAC	6 cut(s)	79, 172, 328, 412, 688, 922
RseI	CAYNNNNRTG	1 cut(s)	428
Rsr2I	CGGWCCG	1 cut(s)	862
RsrII	CGGWCCG	1 cut(s)	862
SapI	GCTCTTC	1 cut(s)	39
SatI	GCNGC	6 cut(s)	210, 213, 308, 341, 367, 474
Sau3AI	GATC	4 cut(s)	400, 504, 586, 657
SchI	GAGTC	4 cut(s)	278, 529, 610, 634
SduI	GDGCHC	2 cut(s)	236, 546
Sfr274I	CTCGAG	1 cut(s)	56
SinI	GGWCC	8 cut(s)	123, 196, 297, 736, 862, 873, 894, 901
SlaI	CTCGAG	1 cut(s)	56
SmaI	CCCGGG	2 cut(s)	104, 899
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	2 cut(s)	221, 971
StyI	CCWWGG	1 cut(s)	937
TaaI	ACNGT	1 cut(s)	968
TaiI	ACGT	4 cut(s)	186, 413, 432, 455
TaqI	TCGA	6 cut(s)	57, 132, 282, 312, 485, 765
TasI	AATT	2 cut(s)	221, 971
TauI	GCSGC	2 cut(s)	310, 476
TfiI	GAWTC	5 cut(s)	7, 28, 270, 319, 886
TseFI	GTSAC	2 cut(s)	421, 644
TseI	GCWGC	4 cut(s)	209, 212, 340, 366
Tsp45I	GTSAC	2 cut(s)	421, 644
TspDTI	ATGAA	2 cut(s)	937, 965
TspGWI	ACGGA	3 cut(s)	66, 105, 282
TspMI	CCCGGG	2 cut(s)	102, 897
VpaK11BI	GGWCC	8 cut(s)	123, 196, 297, 736, 862, 873, 894, 901
XhoI	CTCGAG	1 cut(s)	56
XmaI	CCCGGG	2 cut(s)	102, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.