Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008074.1

Orthogroup ID

OG0003364

Physical Location & Seq

Genomic Coordinates Forward (+)

58831 .. 59769

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008074.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgcagttggccgagttgatacctggtttgcccgaagaaatcgcctatgagtgcctgactcggttgcactactcggctcaccgagtcgcctcccgagtctgccgccgatggggggagctcattaagagcagagacttctacaaccacagaaagcaatacgggttcacccacaaggccgcttctttaatccaagcgcttccggtccgcaccgggtcagacgggtcgaagccggcaggacccgccgacatgccggaggtccggtcgttcttcgccgccggggagctggacggccgggtgtacgtcgccggagggcacgacgagaacaagaacgcgctgaggtcggcgagggtttacgacgtgagggcggacgagtggggcgagctgggcgggatgagcgaggagcgggacgagtgcgaagggctcgtgaacgggtcggagttttgggtggtgagcgggtacgggacggacagccagggcgggtttgtggggagcgcggaggtttatgagatcgggtcgggtcggtggaggcgggtcgaggacgcgtggatggcgggtgagtgtccgaggtcgtgcgttgggattgggaaggatgggaagctgtttagttggggcgagagggactctgcagtgaggtctgggccgtgcggggtggagctgggccggtgggcctttgtgtccgggtcggagtatctagggggaccgcatgagttctttttgacgggaggggaaaatgggaaattggagaaggtagagatgtgtgaggagttctctgggttcgttcagtccggttgcttcgtggagatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030162 GO:0030163 GO:0031323 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043455 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080036 GO:0080037 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

268

Amino Acids

29.46

Weight (kDa)

5.15

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44130 AT3G59940
fragaria_vesca	FvH4_3g45300 FvH4_6g21491
malus_domestica	MD03G1006500.v1.1 MD11G1009500.v1.1 MD12G1051200.v1.1 MD14G1050600.v1.1
prunus_persica	Prupe.6G006200_v2.0.a1 Prupe.7G085300_v2.0.a1
pyrus_communis	pycom03g00690 pycom11g00610 pycom12g04560 pycom14g04170
rosa_chinensis	RchiOBHm_Chr3g0478681 RchiOBHm_Chr5g0082971
rosa_laevigata	RLG00000023633 RLG00000037006
rosa_multiflora	Rmu_co7966478.1_g000001 Rmu_sc0002454.1_g000004 Rmu_sc0008074.1_g000020 Rmu_sc0026666.1_g000001 Rmu_sc0026667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403200
rosa_rugosa	Rorug03G0166900 Rorug05G0481800
rosa_samantha	Rh3AG219200 Rh3BG250900 Rh3CG247700 Rh3DG244000 Rh5AG531400 Rh5BG558400 Rh5CG581300 Rh5DG567200
rosa_wichuraiana	Rw3G019710 Rw5G049720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	403, 453
AccII	CGCG	3 cut(s)	332, 494, 542
AcoI	YGGCCR	2 cut(s)	9, 289
AfaI	GTAC	2 cut(s)	299, 458
AfeI	AGCGCT	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	109, 112
AflIII	ACRYGT	1 cut(s)	540
AjiI	CACGTC	1 cut(s)	358
AjnI	CCWGG	2 cut(s)	22, 471
AluBI	AGCT	5 cut(s)	118, 283, 382, 598, 655
AluI	AGCT	5 cut(s)	118, 283, 382, 598, 655
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	93
Aor51HI	AGCGCT	1 cut(s)	195
AoxI	GGCC	6 cut(s)	9, 174, 289, 638, 658, 666
AspLEI	GCGC	3 cut(s)	196, 334, 494
AspS9I	GGNCC	7 cut(s)	202, 236, 256, 638, 658, 666, 698
AsuC2I	CCSGG	4 cut(s)	211, 277, 293, 679
AsuHPI	GGTGA	4 cut(s)	71, 157, 460, 566
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	4 cut(s)	202, 236, 256, 698
BaeGI	GKGCMC	1 cut(s)	315
BanII	GRGCYC	2 cut(s)	120, 423
BauI	CACGAG	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	120
BbvCI	CCTCAGC	1 cut(s)	335
BccI	CCATC	3 cut(s)	102, 541, 584
BceAI	ACGGC	2 cut(s)	304, 625
BciT130I	CCWGG	2 cut(s)	24, 473
BcnI	CCSGG	4 cut(s)	211, 277, 293, 679
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	692
BfmI	CTRYAG	1 cut(s)	624
BfoI	RGCGCY	1 cut(s)	197
BisI	GCNGC	3 cut(s)	103, 177, 273
BlsI	GCNGC	3 cut(s)	104, 178, 274
Bme1390I	CCNGG	6 cut(s)	24, 211, 277, 293, 473, 679
Bme18I	GGWCC	4 cut(s)	202, 236, 256, 698
BmeT110I	CYCGRG	1 cut(s)	93
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	7 cut(s)	202, 236, 256, 638, 658, 666, 698
BmiI	GGNNCC	2 cut(s)	238, 699
BmrFI	CCNGG	6 cut(s)	24, 211, 277, 293, 473, 679
BplI	GAGNNNNNCTC	4 cut(s)	605, 637, 752, 784
Bpu10I	CCTNAGC	1 cut(s)	335
BpuMI	CCSGG	4 cut(s)	211, 277, 293, 679
BsaJI	CCNNGG	3 cut(s)	276, 472, 563
BsaWI	WCCGGW	3 cut(s)	199, 258, 785
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 112
Bse118I	RCCGGY	2 cut(s)	229, 660
BseBI	CCWGG	2 cut(s)	24, 473
BseDI	CCNNGG	3 cut(s)	276, 472, 563
BseGI	GGATG	3 cut(s)	396, 552, 595
BseLI	CCNNNNNNNGG	2 cut(s)	109, 112
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	413, 776
BseSI	GKGCMC	1 cut(s)	315
BseX3I	CGGCCG	1 cut(s)	289
BseYI	CCCAGC	2 cut(s)	382, 655
Bsh1236I	CGCG	3 cut(s)	332, 494, 542
Bsh1285I	CGRYCG	2 cut(s)	263, 292
BshFI	GGCC	6 cut(s)	11, 176, 291, 640, 660, 668
BsiEI	CGRYCG	2 cut(s)	263, 292
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	93
BslFI	GGGAC	4 cut(s)	419, 475, 632, 711
BslI	CCNNNNNNNGG	2 cut(s)	109, 112
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	4 cut(s)	419, 475, 632, 711
BsnI	GGCC	6 cut(s)	11, 176, 291, 640, 660, 668
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	120, 315, 423
Bsp143I	GATC	1 cut(s)	507
BspANI	GGCC	6 cut(s)	11, 176, 291, 640, 660, 668
BspCNI	CTCAG	1 cut(s)	327
BspFNI	CGCG	3 cut(s)	332, 494, 542
BspLI	GGNNCC	2 cut(s)	238, 699
BspMAI	CTGCAG	1 cut(s)	628
BsrBI	CCGCTC	2 cut(s)	403, 453
BsrFI	RCCGGY	2 cut(s)	229, 660
BssAI	RCCGGY	2 cut(s)	229, 660
BssECI	CCNNGG	3 cut(s)	276, 472, 563
BssMI	GATC	1 cut(s)	507
BssSI	CACGAG	1 cut(s)	422
Bst2BI	CACGAG	1 cut(s)	422
Bst2UI	CCWGG	2 cut(s)	24, 473
BstC8I	GCNNGC	2 cut(s)	231, 380
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	396, 552, 595
BstFNI	CGCG	3 cut(s)	332, 494, 542
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	3 cut(s)	196, 334, 494
BstKTI	GATC	1 cut(s)	510
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	507
BstMCI	CGRYCG	2 cut(s)	263, 292
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 384, 393, 548
BstNI	CCWGG	2 cut(s)	24, 473
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	6 cut(s)	22, 209, 275, 291, 471, 677
BstSFI	CTRYAG	1 cut(s)	624
BstSLI	GKGCMC	1 cut(s)	315
BstUI	CGCG	3 cut(s)	332, 494, 542
BstZI	CGGCCG	1 cut(s)	289
BsuRI	GGCC	6 cut(s)	11, 176, 291, 640, 660, 668
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	3 cut(s)	396, 552, 595
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	1 cut(s)	633
Cac8I	GCNNGC	2 cut(s)	231, 380
CfoI	GCGC	3 cut(s)	196, 334, 494
Cfr10I	RCCGGY	2 cut(s)	229, 660
Cfr13I	GGNCC	7 cut(s)	202, 236, 256, 638, 658, 666, 698
CpoI	CGGWCCG	1 cut(s)	202
CseI	GACGC	1 cut(s)	548
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	298, 457
CspI	CGGWCCG	1 cut(s)	202
CviAII	CATG	2 cut(s)	247, 704
CviQI	GTAC	2 cut(s)	298, 457
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	1 cut(s)	509
DpnII	GATC	1 cut(s)	507
EaeI	YGGCCR	2 cut(s)	9, 289
EagI	CGGCCG	1 cut(s)	289
EciI	GGCGGA	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	118
EclXI	CGGCCG	1 cut(s)	289
Eco24I	GRGCYC	2 cut(s)	120, 423
Eco47I	GGWCC	4 cut(s)	202, 236, 256, 698
Eco47III	AGCGCT	1 cut(s)	195
Eco52I	CGGCCG	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	2 cut(s)	22, 471
EcoT38I	GRGCYC	2 cut(s)	120, 423
FaeI	CATG	2 cut(s)	250, 707
FaiI	YATR	5 cut(s)	48, 248, 504, 705, 805
FaqI	GGGAC	4 cut(s)	419, 475, 632, 711
FatI	CATG	2 cut(s)	246, 703
FauI	CCCGC	8 cut(s)	247, 380, 396, 446, 470, 522, 544, 638
Fnu4HI	GCNGC	3 cut(s)	103, 177, 273
FokI	GGATG	3 cut(s)	403, 559, 602
FriOI	GRGCYC	2 cut(s)	120, 423
Fsp4HI	GCNGC	3 cut(s)	103, 177, 273
FspBI	CTAG	1 cut(s)	692
GlaI	GCGC	3 cut(s)	195, 333, 493
GluI	GCNGC	3 cut(s)	103, 177, 273
GsaI	CCCAGC	2 cut(s)	386, 659
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	6 cut(s)	11, 176, 291, 640, 660, 668
HgaI	GACGC	1 cut(s)	548
HhaI	GCGC	3 cut(s)	196, 334, 494
Hin1II	CATG	2 cut(s)	250, 707
Hin6I	GCGC	3 cut(s)	194, 332, 492
HinP1I	GCGC	3 cut(s)	194, 332, 492
HinfI	GANTC	4 cut(s)	58, 84, 96, 620
HphI	GGTGA	4 cut(s)	71, 157, 460, 566
Hpy166II	GTNNAC	4 cut(s)	165, 298, 352, 427
Hpy188I	TCNGA	4 cut(s)	217, 436, 564, 685
Hpy188III	TCNNGA	2 cut(s)	93, 424
Hpy8I	GTNNAC	4 cut(s)	165, 298, 352, 427
Hpy99I	CGWCG	3 cut(s)	305, 320, 359
HpyAV	CCTTC	3 cut(s)	410, 580, 739
HpyCH4IV	ACGT	2 cut(s)	300, 357
HpyCH4V	TGCA	3 cut(s)	4, 67, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 384, 393, 548
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	2 cut(s)	300, 357
Hsp92II	CATG	2 cut(s)	250, 707
HspAI	GCGC	3 cut(s)	194, 332, 492
KroI	GCCGGC	1 cut(s)	229
KroNI	GCCGGC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	507
LmnI	GCTCC	5 cut(s)	115, 280, 400, 489, 652
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	2 cut(s)	300, 357
MalI	GATC	1 cut(s)	509
MbiI	CCGCTC	2 cut(s)	403, 453
MboI	GATC	1 cut(s)	507
MboII	GAAGA	2 cut(s)	47, 259
MhlI	GDGCHC	3 cut(s)	120, 315, 423
MluCI	AATT	1 cut(s)	737
MluI	ACGCGT	1 cut(s)	540
MlyI	GAGTC	4 cut(s)	52, 93, 105, 614
MmeI	TCCRAC	2 cut(s)	414, 663
MroNI	GCCGGC	1 cut(s)	229
MseI	TTAA	2 cut(s)	123, 185
MspR9I	CCNGG	6 cut(s)	24, 211, 277, 293, 473, 679
MvaI	CCWGG	2 cut(s)	24, 473
MvnI	CGCG	3 cut(s)	332, 494, 542
MwoI	GCNNNNNNNGC	4 cut(s)	239, 384, 393, 548
NaeI	GCCGGC	1 cut(s)	231
NciI	CCSGG	4 cut(s)	211, 277, 293, 679
NdeII	GATC	1 cut(s)	507
NgoMIV	GCCGGC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	250, 707
NlaIV	GGNNCC	2 cut(s)	238, 699
NmeAIII	GCCGAG	2 cut(s)	37, 53
NspI	RCATGY	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PdiI	GCCGGC	1 cut(s)	231
PkrI	GCNGC	3 cut(s)	104, 178, 274
PleI	GAGTC	4 cut(s)	52, 92, 104, 614
PpsI	GAGTC	4 cut(s)	52, 92, 104, 614
PpuMI	RGGWCCY	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	2 cut(s)	22, 471
PspFI	CCCAGC	2 cut(s)	382, 655
PspGI	CCWGG	2 cut(s)	22, 471
PspN4I	GGNNCC	2 cut(s)	238, 699
PspPI	GGNCC	7 cut(s)	202, 236, 256, 638, 658, 666, 698
PspPPI	RGGWCCY	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	628
RsaI	GTAC	2 cut(s)	299, 458
RsaNI	GTAC	2 cut(s)	298, 457
Rsr2I	CGGWCCG	1 cut(s)	202
RsrII	CGGWCCG	1 cut(s)	202
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	123, 185
SatI	GCNGC	3 cut(s)	103, 177, 273
Sau3AI	GATC	1 cut(s)	507
Sau96I	GGNCC	7 cut(s)	202, 236, 256, 638, 658, 666, 698
SchI	GAGTC	4 cut(s)	52, 93, 105, 614
ScrFI	CCNGG	6 cut(s)	24, 211, 277, 293, 473, 679
SduI	GDGCHC	3 cut(s)	120, 315, 423
SexAI	ACCWGGT	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	624
SinI	GGWCC	4 cut(s)	202, 236, 256, 698
Sse9I	AATT	1 cut(s)	737
SspMI	CTAG	1 cut(s)	692
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	6 cut(s)	22, 209, 275, 291, 471, 677
TaiI	ACGT	2 cut(s)	303, 360
TaqI	TCGA	2 cut(s)	224, 534
TasI	AATT	1 cut(s)	737
TauI	GCSGC	3 cut(s)	105, 179, 275
Tru1I	TTAA	2 cut(s)	123, 185
Tru9I	TTAA	2 cut(s)	123, 185
TscAI	CASTG	1 cut(s)	633
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	633
VpaK11BI	GGWCC	4 cut(s)	202, 236, 256, 698
XceI	RCATGY	1 cut(s)	250
XspI	CTAG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.