Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7966478.1

Orthogroup ID

OG0003364

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 415

Gene Structure 415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7966478.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgcagttggccgagttgatacctggtttgcccgaagaaatcgcctatgagtgcctgactcggttgcactactcggctcaccgagtcgcctcccgagtctgccgccgatggggggagctcattaagagcagagacttctacaaccacagaaagcaatacgggttcacccacaaggccgcttctttaatccaagcgcttccggtccgcaccgggtcagacgggtcgaagccggcaggacccgccgtttacggcctgtctgttttcgacccggcgagcggggactgggcccgggtcgacccggttccggagtacccggacgggctgccgctgttctgtcaggtgacgagctcggaggggaagctggtggtgatgggcgggtgggacccggcgagttaccagccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030162 GO:0030163 GO:0031323 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043455 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080036 GO:0080037 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

134

Amino Acids

14.81

Weight (kDa)

6.89

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44130 AT3G59940
fragaria_vesca	FvH4_3g45300 FvH4_6g21491
malus_domestica	MD03G1006500.v1.1 MD11G1009500.v1.1 MD12G1051200.v1.1 MD14G1050600.v1.1
prunus_persica	Prupe.6G006200_v2.0.a1 Prupe.7G085300_v2.0.a1
pyrus_communis	pycom03g00690 pycom11g00610 pycom12g04560 pycom14g04170
rosa_chinensis	RchiOBHm_Chr3g0478681 RchiOBHm_Chr5g0082971
rosa_laevigata	RLG00000023633 RLG00000037006
rosa_multiflora	Rmu_co7966478.1_g000001 Rmu_sc0002454.1_g000004 Rmu_sc0008074.1_g000020 Rmu_sc0026666.1_g000001 Rmu_sc0026667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403200
rosa_rugosa	Rorug03G0166900 Rorug05G0481800
rosa_samantha	Rh3AG219200 Rh3BG250900 Rh3CG247700 Rh3DG244000 Rh5AG531400 Rh5BG558400 Rh5CG581300 Rh5DG567200
rosa_wichuraiana	Rw3G019710 Rw5G049720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	294
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	7 cut(s)	103, 177, 205, 240, 276, 326, 375
AcoI	YGGCCR	1 cut(s)	9
AfaI	GTAC	1 cut(s)	311
AfeI	AGCGCT	1 cut(s)	195
AfiI	CCNNNNNNNGG	4 cut(s)	109, 112, 275, 304
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	3 cut(s)	118, 348, 361
AluI	AGCT	3 cut(s)	118, 348, 361
Alw21I	GWGCWC	2 cut(s)	120, 350
Alw26I	GTCTC	1 cut(s)	126
Ama87I	CYCGRG	2 cut(s)	93, 288
Aor13HI	TCCGGA	1 cut(s)	304
Aor51HI	AGCGCT	1 cut(s)	195
AoxI	GGCC	4 cut(s)	9, 174, 250, 285
ApaI	GGGCCC	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	5 cut(s)	202, 236, 285, 286, 382
AsuC2I	CCSGG	7 cut(s)	211, 269, 289, 290, 299, 314, 386
AsuHPI	GGTGA	4 cut(s)	71, 157, 352, 379
AvaI	CYCGRG	2 cut(s)	93, 288
AvaII	GGWCC	3 cut(s)	202, 236, 382
BaeGI	GKGCMC	1 cut(s)	289
BanII	GRGCYC	3 cut(s)	120, 289, 350
Bbv12I	GWGCWC	2 cut(s)	120, 350
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	2 cut(s)	102, 364
BceAI	ACGGC	2 cut(s)	227, 265
BciT130I	CCWGG	1 cut(s)	24
BcnI	CCSGG	7 cut(s)	211, 269, 289, 290, 299, 314, 386
BcoDI	GTCTC	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	197
BisI	GCNGC	4 cut(s)	103, 177, 323, 326
BlsI	GCNGC	4 cut(s)	104, 178, 324, 327
Bme1390I	CCNGG	8 cut(s)	24, 211, 269, 289, 290, 299, 314, 386
Bme18I	GGWCC	3 cut(s)	202, 236, 382
BmeT110I	CYCGRG	2 cut(s)	93, 288
BmgT120I	GGNCC	5 cut(s)	202, 236, 285, 286, 382
BmiI	GGNNCC	5 cut(s)	238, 287, 303, 383, 384
BmrFI	CCNGG	8 cut(s)	24, 211, 269, 289, 290, 299, 314, 386
BmrI	ACTGGG	1 cut(s)	292
BmuI	ACTGGG	1 cut(s)	292
BpuMI	CCSGG	7 cut(s)	211, 269, 289, 290, 299, 314, 386
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	2 cut(s)	199, 304
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 112, 275, 304
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	287
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	288
BseLI	CCNNNNNNNGG	4 cut(s)	109, 112, 275, 304
BseNI	ACTGG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	309
BshFI	GGCC	4 cut(s)	11, 176, 252, 287
BsiHKAI	GWGCWC	2 cut(s)	120, 350
BsiHKCI	CYCGRG	2 cut(s)	93, 288
BsiSI	CCGG	9 cut(s)	200, 210, 230, 269, 289, 299, 305, 314, 386
BslFI	GGGAC	2 cut(s)	293, 395
BslI	CCNNNNNNNGG	4 cut(s)	109, 112, 275, 304
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	2 cut(s)	293, 395
BsnI	GGCC	4 cut(s)	11, 176, 252, 287
BsoBI	CYCGRG	2 cut(s)	93, 288
Bsp120I	GGGCCC	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	120, 289, 350
Bsp13I	TCCGGA	1 cut(s)	304
BspACI	CCGC	7 cut(s)	103, 177, 205, 240, 276, 326, 375
BspANI	GGCC	4 cut(s)	11, 176, 252, 287
BspEI	TCCGGA	1 cut(s)	304
BspLI	GGNNCC	5 cut(s)	238, 287, 303, 383, 384
BsrBI	CCGCTC	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	231, 274
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	8 cut(s)	22, 209, 267, 287, 288, 297, 312, 384
BstSLI	GKGCMC	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	309
BsuRI	GGCC	4 cut(s)	11, 176, 252, 287
Cac8I	GCNNGC	2 cut(s)	231, 274
CfoI	GCGC	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	5 cut(s)	202, 236, 285, 286, 382
Cfr9I	CCCGGG	1 cut(s)	288
CpoI	CGGWCCG	1 cut(s)	202
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	310
CspI	CGGWCCG	1 cut(s)	202
CviQI	GTAC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	9
Ecl136II	GAGCTC	2 cut(s)	118, 348
Eco24I	GRGCYC	3 cut(s)	120, 289, 350
Eco47I	GGWCC	3 cut(s)	202, 236, 382
Eco47III	AGCGCT	1 cut(s)	195
Eco53kI	GAGCTC	2 cut(s)	118, 348
Eco88I	CYCGRG	2 cut(s)	93, 288
EcoICRI	GAGCTC	2 cut(s)	118, 348
EcoO109I	RGGNCCY	2 cut(s)	236, 382
EcoRII	CCWGG	1 cut(s)	22
EcoT38I	GRGCYC	3 cut(s)	120, 289, 350
FaiI	YATR	1 cut(s)	48
FaqI	GGGAC	2 cut(s)	293, 395
FauI	CCCGC	3 cut(s)	247, 269, 368
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	4 cut(s)	103, 177, 323, 326
FriOI	GRGCYC	3 cut(s)	120, 289, 350
Fsp4HI	GCNGC	4 cut(s)	103, 177, 323, 326
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	4 cut(s)	103, 177, 323, 326
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	4 cut(s)	11, 176, 252, 287
HapII	CCGG	9 cut(s)	200, 210, 230, 269, 289, 299, 305, 314, 386
HhaI	GCGC	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	3 cut(s)	58, 84, 96
HpaII	CCGG	9 cut(s)	200, 210, 230, 269, 289, 299, 305, 314, 386
HphI	GGTGA	4 cut(s)	71, 157, 352, 379
Hpy166II	GTNNAC	3 cut(s)	165, 247, 295
Hpy188I	TCNGA	2 cut(s)	217, 352
Hpy188III	TCNNGA	2 cut(s)	93, 305
Hpy8I	GTNNAC	3 cut(s)	165, 247, 295
HpyCH4V	TGCA	2 cut(s)	4, 67
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HspAI	GCGC	1 cut(s)	194
KflI	GGGWCCC	1 cut(s)	382
Kpn2I	TCCGGA	1 cut(s)	304
KroI	GCCGGC	1 cut(s)	229
KroNI	GCCGGC	1 cut(s)	231
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	1 cut(s)	309
MabI	ACCWGGT	1 cut(s)	22
MaeIII	GTNAC	2 cut(s)	340, 392
MbiI	CCGCTC	1 cut(s)	276
MboII	GAAGA	1 cut(s)	47
MhlI	GDGCHC	3 cut(s)	120, 289, 350
MlyI	GAGTC	3 cut(s)	52, 93, 105
MnlI	CCTC	2 cut(s)	100, 346
MroI	TCCGGA	1 cut(s)	304
MroNI	GCCGGC	1 cut(s)	229
MseI	TTAA	2 cut(s)	123, 185
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	9 cut(s)	200, 210, 230, 269, 289, 299, 305, 314, 386
MspR9I	CCNGG	8 cut(s)	24, 211, 269, 289, 290, 299, 314, 386
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	239
NaeI	GCCGGC	1 cut(s)	231
NciI	CCSGG	7 cut(s)	211, 269, 289, 290, 299, 314, 386
NgoMIV	GCCGGC	1 cut(s)	229
NlaIV	GGNNCC	5 cut(s)	238, 287, 303, 383, 384
NmeAIII	GCCGAG	2 cut(s)	37, 53
NmuCI	GTSAC	1 cut(s)	340
PdiI	GCCGGC	1 cut(s)	231
PkrI	GCNGC	4 cut(s)	104, 178, 324, 327
PleI	GAGTC	3 cut(s)	52, 92, 104
PpsI	GAGTC	3 cut(s)	52, 92, 104
PpuMI	RGGWCCY	2 cut(s)	236, 382
Psp124BI	GAGCTC	2 cut(s)	120, 350
Psp5II	RGGWCCY	2 cut(s)	236, 382
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	5 cut(s)	238, 287, 303, 383, 384
PspOMI	GGGCCC	1 cut(s)	285
PspPI	GGNCC	5 cut(s)	202, 236, 285, 286, 382
PspPPI	RGGWCCY	2 cut(s)	236, 382
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
Rsr2I	CGGWCCG	1 cut(s)	202
RsrII	CGGWCCG	1 cut(s)	202
SacI	GAGCTC	2 cut(s)	120, 350
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	123, 185
SatI	GCNGC	4 cut(s)	103, 177, 323, 326
Sau96I	GGNCC	5 cut(s)	202, 236, 285, 286, 382
SchI	GAGTC	3 cut(s)	52, 93, 105
ScrFI	CCNGG	8 cut(s)	24, 211, 269, 289, 290, 299, 314, 386
SduI	GDGCHC	3 cut(s)	120, 289, 350
SetI	ASST	5 cut(s)	25, 120, 342, 350, 363
SexAI	ACCWGGT	1 cut(s)	22
SinI	GGWCC	3 cut(s)	202, 236, 382
SmaI	CCCGGG	1 cut(s)	290
SsiI	CCGC	7 cut(s)	103, 177, 205, 240, 276, 326, 375
SstI	GAGCTC	2 cut(s)	120, 350
StyD4I	CCNGG	8 cut(s)	22, 209, 267, 287, 288, 297, 312, 384
TaqI	TCGA	3 cut(s)	224, 264, 294
TauI	GCSGC	3 cut(s)	105, 179, 328
Tru1I	TTAA	2 cut(s)	123, 185
Tru9I	TTAA	2 cut(s)	123, 185
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	340
TspMI	CCCGGG	1 cut(s)	288
VpaK11BI	GGWCC	3 cut(s)	202, 236, 382
XmaI	CCCGGG	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.