Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003364

Physical Location & Seq

Genomic Coordinates Reverse (-)

4430433 .. 4431125

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTTCTGTCAGGTGACGAGCTCGGAGGGGAAGCTGGTGGTGATGGGCGGGTGGGACCCGGCGAATTACCAGCCGGTTCGAGACGTGTTCGTGTACGAGTTCACGACTCAGCGGTGGGCTCGGGGGAAGGACATGCCGGAGACCCGGTCGTTTTTCGCCGCCGGGGAGCTCGACGGGCGGGTGTACATCGCCGGCGGCCACGACGAGAACAAGAACGCGATGAAGTCGGCGAGGGTGTACGACGTGAGGGAGAACGAGTGGAGCGAGTTGCCTGAGATGAGTCAGGGGCGAGACGAGTGCGAGGGGTTCGTGTCCGGGTCGGAGTTTTGGGTCGTAAGCGGGTACGCGACGGACATGCAAGGGAGGTTCGTGGGCAGCGCGGAGGTCTATGAAACAGGGCCGGGTCGGTGGAGGCTGGAGGAGGACGCGTGGCGTGCGGGTCAGTGCCCGAGGTCGTGTGTCGGGGTTGGGAAAGACGGGAAGTTCTTCTGTTGGGGCGACTGCGACCCGAGAGTTCGGGTCGGGCCTTGCGCGCTCGGGTTGGGGAAATGGACCTTCCTAGCGGGGTCGGCTTACCAGGGCGCGTGGCAGGAGGAATTTTTGGTCGAAGGACAAAATGGTAAATTGATGAAAATGGAAACGCCTGAGGGTTTCTCTGGTTTCGTGCAGTCCGGGTGCTACGTGGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030162 GO:0030163 GO:0031323 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043455 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080036 GO:0080037 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

231

Amino Acids

25.7

Weight (kDa)

4.77

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_1	PF01344	3 - 46	5e-08	Kelch motif
Kelch_KLHDC2_KLHL20_DRC7	PF24681	7 - 137	1.1e-10	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1	PF24981	7 - 121	5.8e-08	Attractin/LZTR1 beta-propeller
Beta-prop_FBX42	PF13415	9 - 87	1.2e-07	FBX42, beta-propeller domain
Beta-prop_Calicin	PF13964	13 - 99	4.3e-11	Calicin, beta-propeller domain
Kelch_FKB95	PF25210	14 - 145	3.1e-12	FKB95, Kelch-repeats domain
Kelch_1	PF01344	49 - 94	2.3e-12	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44130 AT3G59940
fragaria_vesca	FvH4_3g45300 FvH4_6g21491
malus_domestica	MD03G1006500.v1.1 MD11G1009500.v1.1 MD12G1051200.v1.1 MD14G1050600.v1.1
prunus_persica	Prupe.6G006200_v2.0.a1 Prupe.7G085300_v2.0.a1
pyrus_communis	pycom03g00690 pycom11g00610 pycom12g04560 pycom14g04170
rosa_chinensis	RchiOBHm_Chr3g0478681 RchiOBHm_Chr5g0082971
rosa_laevigata	RLG00000023633 RLG00000037006
rosa_multiflora	Rmu_co7966478.1_g000001 Rmu_sc0002454.1_g000004 Rmu_sc0008074.1_g000020 Rmu_sc0026666.1_g000001 Rmu_sc0026667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403200
rosa_rugosa	Rorug03G0166900 Rorug05G0481800
rosa_samantha	Rh3AG219200 Rh3BG250900 Rh3CG247700 Rh3DG244000 Rh5AG531400 Rh5BG558400 Rh5CG581300 Rh5DG567200
rosa_wichuraiana	Rw3G019710 Rw5G049720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	6 cut(s)	218, 347, 380, 428, 533, 584
AciI	CCGC	9 cut(s)	48, 112, 159, 178, 195, 339, 380, 437, 563
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	2 cut(s)	596, 687
AfaI	GTAC	4 cut(s)	95, 185, 239, 344
AflIII	ACRYGT	2 cut(s)	84, 426
AjiI	CACGTC	2 cut(s)	85, 244
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	3 cut(s)	21, 34, 169
AluI	AGCT	3 cut(s)	21, 34, 169
Alw21I	GWGCWC	2 cut(s)	23, 171
Alw26I	GTCTC	3 cut(s)	75, 134, 285
Ama87I	CYCGRG	4 cut(s)	120, 448, 508, 536
AoxI	GGCC	3 cut(s)	196, 398, 524
ApeKI	GCWGC	1 cut(s)	375
ApoI	RAATTY	2 cut(s)	596, 687
Asp700I	GAANNNNTTC	1 cut(s)	485
AspLEI	GCGC	4 cut(s)	380, 533, 535, 584
AspS9I	GGNCC	4 cut(s)	55, 398, 524, 552
AsuC2I	CCSGG	6 cut(s)	59, 145, 163, 316, 402, 673
AsuHPI	GGTGA	2 cut(s)	25, 52
AvaI	CYCGRG	4 cut(s)	120, 448, 508, 536
AvaII	GGWCC	2 cut(s)	55, 552
AxyI	CCTNAGG	1 cut(s)	645
BaeGI	GKGCMC	1 cut(s)	449
BanII	GRGCYC	3 cut(s)	23, 121, 171
Bbv12I	GWGCWC	2 cut(s)	23, 171
BbvI	GCAGC	1 cut(s)	387
BccI	CCATC	1 cut(s)	37
BcgI	CGANNNNNNTGC	4 cut(s)	279, 313, 337, 371
BciT130I	CCWGG	1 cut(s)	578
BcnI	CCSGG	6 cut(s)	59, 145, 163, 316, 402, 673
BcoDI	GTCTC	3 cut(s)	75, 134, 285
BfaI	CTAG	1 cut(s)	560
BisI	GCNGC	3 cut(s)	159, 196, 376
BlsI	GCNGC	3 cut(s)	160, 197, 377
Bme1390I	CCNGG	7 cut(s)	59, 145, 163, 316, 402, 578, 673
Bme18I	GGWCC	2 cut(s)	55, 552
BmeT110I	CYCGRG	4 cut(s)	120, 448, 508, 536
BmgBI	CACGTC	2 cut(s)	85, 244
BmgT120I	GGNCC	4 cut(s)	55, 398, 524, 552
BmiI	GGNNCC	2 cut(s)	56, 57
BmrFI	CCNGG	7 cut(s)	59, 145, 163, 316, 402, 578, 673
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
BpmI	CTGGAG	1 cut(s)	437
BpuMI	CCSGG	6 cut(s)	59, 145, 163, 316, 402, 673
BsaAI	YACGTR	1 cut(s)	682
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	162, 449, 577
BsaXI	ACNNNNNCTCC	6 cut(s)	131, 161, 242, 272, 413, 443
Bse118I	RCCGGY	2 cut(s)	73, 191
Bse21I	CCTNAGG	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	3 cut(s)	162, 449, 577
BseMII	CTCAG	3 cut(s)	122, 264, 636
BsePI	GCGCGC	1 cut(s)	531
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	449
BseXI	GCAGC	1 cut(s)	387
BsgI	GTGCAG	1 cut(s)	686
Bsh1236I	CGCG	6 cut(s)	218, 347, 380, 428, 533, 584
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	198, 400, 526
BsiEI	CGRYCG	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	23, 171
BsiHKCI	CYCGRG	4 cut(s)	120, 448, 508, 536
BsiSI	CCGG	9 cut(s)	59, 74, 137, 145, 162, 192, 315, 401, 672
BslFI	GGGAC	1 cut(s)	68
BsmAI	GTCTC	3 cut(s)	75, 134, 285
BsmBI	CGTCTC	2 cut(s)	75, 285
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	198, 400, 526
Bso31I	GGTCTC	1 cut(s)	134
BsoBI	CYCGRG	4 cut(s)	120, 448, 508, 536
Bsp1286I	GDGCHC	4 cut(s)	23, 121, 171, 449
Bsp1407I	TGTACA	1 cut(s)	183
BspACI	CCGC	9 cut(s)	48, 112, 159, 178, 195, 339, 380, 437, 563
BspANI	GGCC	3 cut(s)	198, 400, 526
BspCNI	CTCAG	3 cut(s)	121, 265, 637
BspFNI	CGCG	6 cut(s)	218, 347, 380, 428, 533, 584
BspLI	GGNNCC	2 cut(s)	56, 57
BspTNI	GGTCTC	1 cut(s)	134
BsrFI	RCCGGY	2 cut(s)	73, 191
BsrGI	TGTACA	1 cut(s)	183
BssAI	RCCGGY	2 cut(s)	73, 191
BssECI	CCNNGG	3 cut(s)	162, 449, 577
BssHII	GCGCGC	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	578
BstAUI	TGTACA	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	682
BstC8I	GCNNGC	3 cut(s)	193, 435, 533
BstDEI	CTNAG	3 cut(s)	108, 273, 645
BstFNI	CGCG	6 cut(s)	218, 347, 380, 428, 533, 584
BstHHI	GCGC	4 cut(s)	380, 533, 535, 584
BstMAI	GTCTC	3 cut(s)	75, 134, 285
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 434, 532, 569
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	2 cut(s)	136, 358
BstSCI	CCNGG	7 cut(s)	57, 143, 161, 314, 400, 576, 671
BstSLI	GKGCMC	1 cut(s)	449
BstUI	CGCG	6 cut(s)	218, 347, 380, 428, 533, 584
BstV1I	GCAGC	1 cut(s)	387
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	3 cut(s)	198, 400, 526
BtgZI	GCGATG	2 cut(s)	172, 233
BtrI	CACGTC	2 cut(s)	85, 244
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	3 cut(s)	193, 435, 533
CfoI	GCGC	4 cut(s)	380, 533, 535, 584
Cfr10I	RCCGGY	2 cut(s)	73, 191
Cfr13I	GGNCC	4 cut(s)	55, 398, 524, 552
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	4 cut(s)	94, 184, 238, 343
CviAII	CATG	2 cut(s)	133, 355
CviQI	GTAC	4 cut(s)	94, 184, 238, 343
DdeI	CTNAG	3 cut(s)	108, 273, 645
EaeI	YGGCCR	1 cut(s)	196
Ecl136II	GAGCTC	2 cut(s)	21, 169
Eco24I	GRGCYC	3 cut(s)	23, 121, 171
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	2 cut(s)	55, 552
Eco53kI	GAGCTC	2 cut(s)	21, 169
Eco81I	CCTNAGG	1 cut(s)	645
Eco88I	CYCGRG	4 cut(s)	120, 448, 508, 536
EcoICRI	GAGCTC	2 cut(s)	21, 169
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	576
EcoT38I	GRGCYC	3 cut(s)	23, 121, 171
Esp3I	CGTCTC	2 cut(s)	75, 285
FaeI	CATG	2 cut(s)	136, 358
FaiI	YATR	3 cut(s)	134, 356, 390
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	132, 354
FauI	CCCGC	5 cut(s)	41, 171, 332, 430, 556
Fnu4HI	GCNGC	3 cut(s)	159, 196, 376
FriOI	GRGCYC	3 cut(s)	23, 121, 171
Fsp4HI	GCNGC	3 cut(s)	159, 196, 376
FspBI	CTAG	1 cut(s)	560
GlaI	GCGC	4 cut(s)	379, 532, 534, 583
GluI	GCNGC	3 cut(s)	159, 196, 376
GsuI	CTGGAG	1 cut(s)	437
HaeIII	GGCC	3 cut(s)	198, 400, 526
HapII	CCGG	9 cut(s)	59, 74, 137, 145, 162, 192, 315, 401, 672
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	4 cut(s)	380, 533, 535, 584
Hin1II	CATG	2 cut(s)	136, 358
Hin6I	GCGC	4 cut(s)	378, 531, 533, 582
HinP1I	GCGC	4 cut(s)	378, 531, 533, 582
HinfI	GANTC	2 cut(s)	106, 280
HpaII	CCGG	9 cut(s)	59, 74, 137, 145, 162, 192, 315, 401, 672
HphI	GGTGA	2 cut(s)	25, 52
Hpy166II	GTNNAC	4 cut(s)	94, 102, 184, 238
Hpy188I	TCNGA	2 cut(s)	25, 322
Hpy188III	TCNNGA	2 cut(s)	80, 103
Hpy8I	GTNNAC	4 cut(s)	94, 102, 184, 238
Hpy99I	CGWCG	4 cut(s)	176, 206, 245, 352
HpyAV	CCTTC	3 cut(s)	121, 565, 602
HpyCH4IV	ACGT	3 cut(s)	84, 243, 681
HpyCH4V	TGCA	2 cut(s)	358, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 434, 532, 569
HpyF3I	CTNAG	3 cut(s)	108, 273, 645
HpySE526I	ACGT	3 cut(s)	84, 243, 681
Hsp92II	CATG	2 cut(s)	136, 358
HspAI	GCGC	4 cut(s)	378, 531, 533, 582
KflI	GGGWCCC	1 cut(s)	55
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
LmnI	GCTCC	2 cut(s)	166, 261
Lsp1109I	GCAGC	1 cut(s)	387
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	3 cut(s)	84, 243, 681
MaeIII	GTNAC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	478
MhlI	GDGCHC	4 cut(s)	23, 121, 171, 449
MluCI	AATT	4 cut(s)	64, 596, 623, 687
MluI	ACGCGT	1 cut(s)	426
MlyI	GAGTC	2 cut(s)	100, 289
MmeI	TCCRAC	1 cut(s)	300
MreI	CGCCGGCG	1 cut(s)	191
MroNI	GCCGGC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	9 cut(s)	59, 74, 137, 145, 162, 192, 315, 401, 672
MspR9I	CCNGG	7 cut(s)	59, 145, 163, 316, 402, 578, 673
MvaI	CCWGG	1 cut(s)	578
MvnI	CGCG	6 cut(s)	218, 347, 380, 428, 533, 584
MwoI	GCNNNNNNNGC	4 cut(s)	175, 434, 532, 569
NaeI	GCCGGC	1 cut(s)	193
NciI	CCSGG	6 cut(s)	59, 145, 163, 316, 402, 673
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	2 cut(s)	136, 358
NlaIV	GGNNCC	2 cut(s)	56, 57
NmuCI	GTSAC	1 cut(s)	13
NspI	RCATGY	2 cut(s)	136, 358
PauI	GCGCGC	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdiI	GCCGGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	145
PkrI	GCNGC	3 cut(s)	160, 197, 377
PleI	GAGTC	2 cut(s)	100, 288
PpsI	GAGTC	2 cut(s)	100, 288
Ppu21I	YACGTR	1 cut(s)	682
PpuMI	RGGWCCY	1 cut(s)	55
Psp124BI	GAGCTC	2 cut(s)	23, 171
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	2 cut(s)	56, 57
PspPI	GGNCC	4 cut(s)	55, 398, 524, 552
PspPPI	RGGWCCY	1 cut(s)	55
PsyI	GACNNNGTC	1 cut(s)	145
PteI	GCGCGC	1 cut(s)	531
RsaI	GTAC	4 cut(s)	95, 185, 239, 344
RsaNI	GTAC	4 cut(s)	94, 184, 238, 343
SacI	GAGCTC	2 cut(s)	23, 171
SatI	GCNGC	3 cut(s)	159, 196, 376
Sau96I	GGNCC	4 cut(s)	55, 398, 524, 552
SchI	GAGTC	2 cut(s)	100, 289
ScrFI	CCNGG	7 cut(s)	59, 145, 163, 316, 402, 578, 673
SduI	GDGCHC	4 cut(s)	23, 121, 171, 449
SgrAI	CRCCGGYG	1 cut(s)	191
SinI	GGWCC	2 cut(s)	55, 552
Sse9I	AATT	4 cut(s)	64, 596, 623, 687
SsiI	CCGC	9 cut(s)	48, 112, 159, 178, 195, 339, 380, 437, 563
SspMI	CTAG	1 cut(s)	560
SstI	GAGCTC	2 cut(s)	23, 171
StyD4I	CCNGG	7 cut(s)	57, 143, 161, 314, 400, 576, 671
TaiI	ACGT	3 cut(s)	87, 246, 684
TaqI	TCGA	3 cut(s)	79, 171, 606
TasI	AATT	4 cut(s)	64, 596, 623, 687
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	2 cut(s)	161, 198
TscAI	CASTG	1 cut(s)	449
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	236, 405, 644
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	449
Tth111I	GACNNNGTC	1 cut(s)	145
VpaK11BI	GGWCC	2 cut(s)	55, 552
XapI	RAATTY	2 cut(s)	596, 687
XceI	RCATGY	2 cut(s)	136, 358
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.