Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003364

Physical Location & Seq

Genomic Coordinates Forward (+)

25632061 .. 25632972

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGGGAGCTCATTAAGAGCAGAGACTTCTACAACCACAGAAAGCAATACGGGTTCACCCACAAGGCCGCTTCTTTAATCCAAGCGCTTCCGGTTCGAACCGGGTCAGACGGGTCGAAGCCGGCCGGACCCGCCGTTTACGGCTTGTCTGTTTTCGACCCCGCGAGCGGGGACTGGGCCCGGGTCGACCCGGTTCCGGAGTACCCGGACGGGCTGCCGCTGTTCTGTCAGGTGACGAGCTCGGAGGGGAAGCTGGTGGTGATGGGCGGGTGGGACCCGGCGAGTTACCAGCCGGTGAGACACGTGTTCGTGTACGAGTTCACGACGCAGCGGTGGAGTAAAGGGAAGGACATGCCGGAGGTCCGGTCGTTCTTCGCCGCCGGGGAGATGGACGGCCGGGTGTACGTCGCCGGAGGGCACGACGAGAACAAGAACGCGCTGAGGTCGGCGAGGGTTTACGACGTGAGGGCGGACGAGTGGGGCGAGCTGGGCGGGATGAGCGAGGAGCGGGACGAGTGCGAAGGGCTCGTAAACGGGTCGGAGTTTTGGGTGGTGAGCGGGTACGGGACGGAAAGCCAGGGCGGGTTTGTGGGGAGCGCGGAGGTTTATGAGATCGGGTCGGGTCGGTGGAGGCGGGTCGAGGACGCGTGGCCTGCGGGTGAGTGTCCGAGGTCGTGCGTTGGGATTGGGAAGGATGGGAAGCTGTTTAGTTGGGGCGAGAGGGATTCTGCGGTGAGGTCTGGGCCGTGCGGTGTGGAGTTGGGCCGGTGGACCTTTGTGTCCGGGTCGGAGTATCTAGGGGGACCGCATGAGTTCTTTTTGACAGGAGGGGAAAATGGGAAATTGGAGAAGGTAGAGATGTGTGAGGAGTTCTCTGGGTTTGTTCAGTCCGGTTGCTTCGTGGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030162 GO:0030163 GO:0031323 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043455 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080036 GO:0080037 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

303

Amino Acids

33.2

Weight (kDa)

4.91

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	41 - 216	9.2e-12	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	49 - 163	3e-08	FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1	PF24981	57 - 166	6.4e-06	Attractin/LZTR1 beta-propeller
Kelch_FKB95	PF25210	64 - 227	1.7e-11	FKB95, Kelch-repeats domain
Kelch_1	PF01344	76 - 119	4e-08	Kelch motif
Beta-prop_Calicin	PF13964	86 - 166	8.9e-10	Calicin, beta-propeller domain
Kelch_1	PF01344	122 - 166	6.7e-09	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44130 AT3G59940
fragaria_vesca	FvH4_3g45300 FvH4_6g21491
malus_domestica	MD03G1006500.v1.1 MD11G1009500.v1.1 MD12G1051200.v1.1 MD14G1050600.v1.1
prunus_persica	Prupe.6G006200_v2.0.a1 Prupe.7G085300_v2.0.a1
pyrus_communis	pycom03g00690 pycom11g00610 pycom12g04560 pycom14g04170
rosa_chinensis	RchiOBHm_Chr3g0478681 RchiOBHm_Chr5g0082971
rosa_laevigata	RLG00000023633 RLG00000037006
rosa_multiflora	Rmu_co7966478.1_g000001 Rmu_sc0002454.1_g000004 Rmu_sc0008074.1_g000020 Rmu_sc0026666.1_g000001 Rmu_sc0026667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403200
rosa_rugosa	Rorug03G0166900 Rorug05G0481800
rosa_samantha	Rh3AG219200 Rh3BG250900 Rh3CG247700 Rh3DG244000 Rh5AG531400 Rh5BG558400 Rh5CG581300 Rh5DG567200
rosa_wichuraiana	Rw3G019710 Rw5G049720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	778
AccBSI	CCGCTC	3 cut(s)	168, 508, 558
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	4 cut(s)	164, 437, 599, 647
AccIII	TCCGGA	1 cut(s)	196
AcoI	YGGCCR	2 cut(s)	123, 394
AcvI	CACGTG	1 cut(s)	304
AfaI	GTAC	4 cut(s)	203, 314, 404, 563
AfeI	AGCGCT	1 cut(s)	87
AfiI	CCNNNNNNNGG	3 cut(s)	167, 168, 196
AflIII	ACRYGT	3 cut(s)	301, 303, 645
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	5 cut(s)	10, 240, 253, 487, 703
AluI	AGCT	5 cut(s)	10, 240, 253, 487, 703
Alw21I	GWGCWC	2 cut(s)	12, 242
Alw26I	GTCTC	2 cut(s)	18, 292
Ama87I	CYCGRG	1 cut(s)	180
Aor13HI	TCCGGA	1 cut(s)	196
Aor51HI	AGCGCT	1 cut(s)	87
AoxI	GGCC	7 cut(s)	66, 123, 177, 394, 650, 743, 763
ApaI	GGGCCC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	214, 328
AspLEI	GCGC	3 cut(s)	88, 439, 599
AspS9I	GGNCC	9 cut(s)	128, 177, 178, 274, 361, 743, 763, 771, 803
AsuC2I	CCSGG	9 cut(s)	103, 181, 182, 191, 206, 278, 382, 398, 784
AsuHPI	GGTGA	7 cut(s)	49, 244, 271, 307, 565, 671, 745
AsuII	TTCGAA	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	5 cut(s)	128, 274, 361, 771, 803
BaeGI	GKGCMC	2 cut(s)	181, 420
BanII	GRGCYC	4 cut(s)	12, 181, 242, 528
BbrPI	CACGTG	1 cut(s)	304
Bbv12I	GWGCWC	2 cut(s)	12, 242
BbvCI	CCTCAGC	1 cut(s)	440
BbvI	GCAGC	2 cut(s)	201, 340
BccI	CCATC	3 cut(s)	256, 382, 689
BceAI	ACGGC	4 cut(s)	119, 157, 409, 730
BciT130I	CCWGG	1 cut(s)	578
BcnI	CCSGG	9 cut(s)	103, 181, 182, 191, 206, 278, 382, 398, 784
BcoDI	GTCTC	2 cut(s)	18, 292
BfaI	CTAG	1 cut(s)	797
BfoI	RGCGCY	1 cut(s)	89
BisI	GCNGC	5 cut(s)	69, 215, 218, 329, 378
BlsI	GCNGC	5 cut(s)	70, 216, 219, 330, 379
Bme18I	GGWCC	5 cut(s)	128, 274, 361, 771, 803
BmeT110I	CYCGRG	1 cut(s)	180
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	9 cut(s)	128, 177, 178, 274, 361, 743, 763, 771, 803
BmiI	GGNNCC	6 cut(s)	130, 179, 195, 275, 276, 804
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BplI	GAGNNNNNCTC	2 cut(s)	857, 889
Bpu10I	CCTNAGC	1 cut(s)	440
Bpu14I	TTCGAA	1 cut(s)	97
BpuMI	CCSGG	9 cut(s)	103, 181, 182, 191, 206, 278, 382, 398, 784
BsaAI	YACGTR	1 cut(s)	304
BsaJI	CCNNGG	4 cut(s)	180, 381, 577, 668
BsaWI	WCCGGW	4 cut(s)	91, 196, 363, 890
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 168, 196
Bse118I	RCCGGY	3 cut(s)	121, 292, 765
Bse1I	ACTGG	1 cut(s)	179
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	4 cut(s)	180, 381, 577, 668
BseGI	GGATG	2 cut(s)	501, 700
BseLI	CCNNNNNNNGG	3 cut(s)	167, 168, 196
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	2 cut(s)	518, 881
BseSI	GKGCMC	2 cut(s)	181, 420
BseX3I	CGGCCG	2 cut(s)	123, 394
BseXI	GCAGC	2 cut(s)	201, 340
BseYI	CCCAGC	1 cut(s)	487
Bsh1236I	CGCG	4 cut(s)	164, 437, 599, 647
Bsh1285I	CGRYCG	3 cut(s)	126, 368, 397
BshFI	GGCC	7 cut(s)	68, 125, 179, 396, 652, 745, 765
BsiEI	CGRYCG	3 cut(s)	126, 368, 397
BsiHKAI	GWGCWC	2 cut(s)	12, 242
BsiHKCI	CYCGRG	1 cut(s)	180
BslFI	GGGAC	5 cut(s)	185, 287, 524, 580, 816
BslI	CCNNNNNNNGG	3 cut(s)	167, 168, 196
BsmAI	GTCTC	2 cut(s)	18, 292
BsmFI	GGGAC	5 cut(s)	185, 287, 524, 580, 816
BsnI	GGCC	7 cut(s)	68, 125, 179, 396, 652, 745, 765
BsoBI	CYCGRG	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	97
Bsp120I	GGGCCC	1 cut(s)	177
Bsp1286I	GDGCHC	5 cut(s)	12, 181, 242, 420, 528
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	612
BspANI	GGCC	7 cut(s)	68, 125, 179, 396, 652, 745, 765
BspCNI	CTCAG	1 cut(s)	432
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	4 cut(s)	164, 437, 599, 647
BspLI	GGNNCC	6 cut(s)	130, 179, 195, 275, 276, 804
BspT104I	TTCGAA	1 cut(s)	97
BsrBI	CCGCTC	3 cut(s)	168, 508, 558
BsrFI	RCCGGY	3 cut(s)	121, 292, 765
BsrI	ACTGG	1 cut(s)	179
BssAI	RCCGGY	3 cut(s)	121, 292, 765
BssECI	CCNNGG	4 cut(s)	180, 381, 577, 668
BssMI	GATC	1 cut(s)	612
Bst2UI	CCWGG	1 cut(s)	578
BstBAI	YACGTR	1 cut(s)	304
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	123, 166, 485, 654
BstDEI	CTNAG	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	501, 700
BstFNI	CGCG	4 cut(s)	164, 437, 599, 647
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	3 cut(s)	88, 439, 599
BstKTI	GATC	1 cut(s)	615
BstMAI	GTCTC	2 cut(s)	18, 292
BstMBI	GATC	1 cut(s)	612
BstMCI	CGRYCG	3 cut(s)	126, 368, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 489, 498, 653
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	1 cut(s)	355
BstSLI	GKGCMC	2 cut(s)	181, 420
BstUI	CGCG	4 cut(s)	164, 437, 599, 647
BstV1I	GCAGC	2 cut(s)	201, 340
BstZI	CGGCCG	2 cut(s)	123, 394
BsuRI	GGCC	7 cut(s)	68, 125, 179, 396, 652, 745, 765
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	501, 700
Cac8I	GCNNGC	4 cut(s)	123, 166, 485, 654
CfoI	GCGC	3 cut(s)	88, 439, 599
Cfr10I	RCCGGY	3 cut(s)	121, 292, 765
Cfr13I	GGNCC	9 cut(s)	128, 177, 178, 274, 361, 743, 763, 771, 803
Cfr9I	CCCGGG	1 cut(s)	180
CseI	GACGC	2 cut(s)	334, 653
Csp6I	GTAC	4 cut(s)	202, 313, 403, 562
CviAII	CATG	2 cut(s)	352, 809
CviQI	GTAC	4 cut(s)	202, 313, 403, 562
DdeI	CTNAG	1 cut(s)	440
DpnI	GATC	1 cut(s)	614
DpnII	GATC	1 cut(s)	612
DrdI	GACNNNNNNGTC	1 cut(s)	778
DseDI	GACNNNNNNGTC	1 cut(s)	778
EaeI	YGGCCR	2 cut(s)	123, 394
EagI	CGGCCG	2 cut(s)	123, 394
EciI	GGCGGA	1 cut(s)	485
Ecl136II	GAGCTC	2 cut(s)	10, 240
EclXI	CGGCCG	2 cut(s)	123, 394
Eco24I	GRGCYC	4 cut(s)	12, 181, 242, 528
Eco47I	GGWCC	5 cut(s)	128, 274, 361, 771, 803
Eco47III	AGCGCT	1 cut(s)	87
Eco52I	CGGCCG	2 cut(s)	123, 394
Eco53kI	GAGCTC	2 cut(s)	10, 240
Eco72I	CACGTG	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	180
EcoICRI	GAGCTC	2 cut(s)	10, 240
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	576
EcoT38I	GRGCYC	4 cut(s)	12, 181, 242, 528
FaeI	CATG	2 cut(s)	355, 812
FaiI	YATR	4 cut(s)	353, 609, 810, 910
FaqI	GGGAC	5 cut(s)	185, 287, 524, 580, 816
FatI	CATG	2 cut(s)	351, 808
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	69, 215, 218, 329, 378
FokI	GGATG	2 cut(s)	508, 707
FriOI	GRGCYC	4 cut(s)	12, 181, 242, 528
Fsp4HI	GCNGC	5 cut(s)	69, 215, 218, 329, 378
FspBI	CTAG	1 cut(s)	797
GlaI	GCGC	3 cut(s)	87, 438, 598
GluI	GCNGC	5 cut(s)	69, 215, 218, 329, 378
GsaI	CCCAGC	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	7 cut(s)	68, 125, 179, 396, 652, 745, 765
HgaI	GACGC	2 cut(s)	334, 653
HhaI	GCGC	3 cut(s)	88, 439, 599
Hin1II	CATG	2 cut(s)	355, 812
Hin6I	GCGC	3 cut(s)	86, 437, 597
HinP1I	GCGC	3 cut(s)	86, 437, 597
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	725
HphI	GGTGA	7 cut(s)	49, 244, 271, 307, 565, 671, 745
Hpy166II	GTNNAC	9 cut(s)	57, 139, 187, 313, 321, 403, 457, 532, 771
Hpy188I	TCNGA	5 cut(s)	109, 244, 541, 669, 790
Hpy188III	TCNNGA	2 cut(s)	197, 322
Hpy8I	GTNNAC	9 cut(s)	57, 139, 187, 313, 321, 403, 457, 532, 771
Hpy99I	CGWCG	4 cut(s)	328, 410, 425, 464
HpyAV	CCTTC	4 cut(s)	340, 515, 685, 844
HpyCH4IV	ACGT	3 cut(s)	303, 405, 462
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 489, 498, 653
HpyF3I	CTNAG	1 cut(s)	440
HpySE526I	ACGT	3 cut(s)	303, 405, 462
Hsp92II	CATG	2 cut(s)	355, 812
HspAI	GCGC	3 cut(s)	86, 437, 597
KflI	GGGWCCC	1 cut(s)	274
Kpn2I	TCCGGA	1 cut(s)	196
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	612
LmnI	GCTCC	3 cut(s)	7, 505, 594
Lsp1109I	GCAGC	2 cut(s)	201, 340
MaeI	CTAG	1 cut(s)	797
MaeII	ACGT	3 cut(s)	303, 405, 462
MaeIII	GTNAC	2 cut(s)	232, 284
MalI	GATC	1 cut(s)	614
MbiI	CCGCTC	3 cut(s)	168, 508, 558
MboI	GATC	1 cut(s)	612
MboII	GAAGA	1 cut(s)	364
MhlI	GDGCHC	5 cut(s)	12, 181, 242, 420, 528
MluCI	AATT	1 cut(s)	842
MluI	ACGCGT	1 cut(s)	645
MmeI	TCCRAC	2 cut(s)	519, 768
MroI	TCCGGA	1 cut(s)	196
MroNI	GCCGGC	1 cut(s)	121
MseI	TTAA	2 cut(s)	15, 77
MspA1I	CMGCKG	2 cut(s)	220, 331
MvaI	CCWGG	1 cut(s)	578
MvnI	CGCG	4 cut(s)	164, 437, 599, 647
MwoI	GCNNNNNNNGC	4 cut(s)	131, 489, 498, 653
NaeI	GCCGGC	1 cut(s)	123
NciI	CCSGG	9 cut(s)	103, 181, 182, 191, 206, 278, 382, 398, 784
NdeII	GATC	1 cut(s)	612
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	355, 812
NlaIV	GGNNCC	6 cut(s)	130, 179, 195, 275, 276, 804
NmuCI	GTSAC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PdiI	GCCGGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	725
PkrI	GCNGC	5 cut(s)	70, 216, 219, 330, 379
PmaCI	CACGTG	1 cut(s)	304
PmlI	CACGTG	1 cut(s)	304
Ppu21I	YACGTR	1 cut(s)	304
PpuMI	RGGWCCY	1 cut(s)	274
Psp124BI	GAGCTC	2 cut(s)	12, 242
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	576
PspCI	CACGTG	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	6 cut(s)	130, 179, 195, 275, 276, 804
PspOMI	GGGCCC	1 cut(s)	177
PspPI	GGNCC	9 cut(s)	128, 177, 178, 274, 361, 743, 763, 771, 803
PspPPI	RGGWCCY	1 cut(s)	274
RsaI	GTAC	4 cut(s)	203, 314, 404, 563
RsaNI	GTAC	4 cut(s)	202, 313, 403, 562
SacI	GAGCTC	2 cut(s)	12, 242
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	15, 77
SatI	GCNGC	5 cut(s)	69, 215, 218, 329, 378
Sau3AI	GATC	1 cut(s)	612
Sau96I	GGNCC	9 cut(s)	128, 177, 178, 274, 361, 743, 763, 771, 803
SduI	GDGCHC	5 cut(s)	12, 181, 242, 420, 528
SfuI	TTCGAA	1 cut(s)	97
SinI	GGWCC	5 cut(s)	128, 274, 361, 771, 803
SmaI	CCCGGG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	842
SspMI	CTAG	1 cut(s)	797
SstI	GAGCTC	2 cut(s)	12, 242
TaiI	ACGT	3 cut(s)	306, 408, 465
TaqI	TCGA	5 cut(s)	97, 116, 156, 186, 639
TasI	AATT	1 cut(s)	842
TauI	GCSGC	3 cut(s)	71, 220, 380
TfiI	GAWTC	1 cut(s)	725
Tru1I	TTAA	2 cut(s)	15, 77
Tru9I	TTAA	2 cut(s)	15, 77
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	2 cut(s)	214, 328
Tsp45I	GTSAC	1 cut(s)	232
TspGWI	ACGGA	1 cut(s)	584
TspMI	CCCGGG	1 cut(s)	180
VpaK11BI	GGWCC	5 cut(s)	128, 274, 361, 771, 803
XceI	RCATGY	1 cut(s)	355
XmaI	CCCGGG	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.