Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003364

Physical Location & Seq

Genomic Coordinates Reverse (-)

66300003 .. 66300552

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0481800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAAACCCATTTCACATTTTTCTGGGGCAAAAACACCACAGCAATTATATTCCCGGGATGGCCCGGAGACAGCCTTGAATCTTACATCTTAGCCTTAATAGCTGTCTTTCTGCTCTCTTTGGTGGTTGAGTGGCTTTCTCACGCTAGATTGATCGAGCCTAGTTCGGATAATAATATTGCTGATGGACTTCGACAGACCTTGATGTATGGTACGAGAGTCGGACTGTCTTATTTGGTAATGCTTGCAGTCATGTCATTCGATGTTGGTGTTCTACTAGCTGCAATTGCAGGATGTTCAGTTGGGTTCCTGGTGTTTGGTAGTAGGGTTTTTATGAGATCGAAGGTAGGGCATAGTGATATCACTGATATGGATCAAACTGATCTTCCTCCATTGAAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0019222 GO:0031323 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

134

Amino Acids

14.73

Weight (kDa)

5.81

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ctr	PF04145	6 - 50	6.1e-06	Ctr copper transporter family
Ctr	PF04145	61 - 106	3.7e-09	Ctr copper transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44130 AT3G59940
fragaria_vesca	FvH4_3g45300 FvH4_6g21491
malus_domestica	MD03G1006500.v1.1 MD11G1009500.v1.1 MD12G1051200.v1.1 MD14G1050600.v1.1
prunus_persica	Prupe.6G006200_v2.0.a1 Prupe.7G085300_v2.0.a1
pyrus_communis	pycom03g00690 pycom11g00610 pycom12g04560 pycom14g04170
rosa_chinensis	RchiOBHm_Chr3g0478681 RchiOBHm_Chr5g0082971
rosa_laevigata	RLG00000023633 RLG00000037006
rosa_multiflora	Rmu_co7966478.1_g000001 Rmu_sc0002454.1_g000004 Rmu_sc0008074.1_g000020 Rmu_sc0026666.1_g000001 Rmu_sc0026667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403200
rosa_rugosa	Rorug03G0166900 Rorug05G0481800
rosa_samantha	Rh3AG219200 Rh3BG250900 Rh3CG247700 Rh3DG244000 Rh5AG531400 Rh5BG558400 Rh5CG581300 Rh5DG567200
rosa_wichuraiana	Rw3G019710 Rw5G049720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	381
AfaI	GTAC	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	80, 397
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	2 cut(s)	104, 281
AluI	AGCT	2 cut(s)	104, 281
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	381
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	63
AsuC2I	CCSGG	3 cut(s)	56, 57, 66
AvaI	CYCGRG	1 cut(s)	55
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	2 cut(s)	54, 179
BciT130I	CCWGG	1 cut(s)	311
BcnI	CCSGG	3 cut(s)	56, 57, 66
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	3 cut(s)	147, 162, 278
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	4 cut(s)	56, 57, 66, 311
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	4 cut(s)	56, 57, 66, 311
BpuMI	CCSGG	3 cut(s)	56, 57, 66
BsaBI	GATNNNNATC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	55
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	2 cut(s)	65, 299
BseJI	GATNNNNATC	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	56, 66
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	55
Bsp143I	GATC	4 cut(s)	153, 338, 373, 382
BspANI	GGCC	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	4 cut(s)	153, 338, 373, 382
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	65, 299
BstKTI	GATC	4 cut(s)	156, 341, 376, 385
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	4 cut(s)	153, 338, 373, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 287
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	4 cut(s)	54, 55, 64, 309
BstV1I	GCAGC	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	65, 299
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	63
Cfr9I	CCCGGG	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	7 cut(s)	64, 75, 95, 104, 136, 160, 281
CviKI_1	RGCY	7 cut(s)	64, 75, 95, 104, 136, 160, 281
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	4 cut(s)	155, 340, 375, 384
DpnII	GATC	4 cut(s)	153, 338, 373, 382
Eco32I	GATATC	1 cut(s)	361
Eco88I	CYCGRG	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	309
EcoRV	GATATC	1 cut(s)	361
FaeI	CATG	1 cut(s)	256
FaiI	YATR	6 cut(s)	50, 210, 254, 335, 354, 371
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	2 cut(s)	72, 306
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	3 cut(s)	147, 162, 278
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	2 cut(s)	56, 66
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	2 cut(s)	80, 219
HpaII	CCGG	2 cut(s)	56, 66
Hpy188I	TCNGA	2 cut(s)	169, 224
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	248, 284, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 287
HpyF3I	CTNAG	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	153, 338, 373, 382
LpnPI	CCDG	6 cut(s)	10, 69, 79, 276, 296, 323
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	3 cut(s)	147, 162, 278
MalI	GATC	4 cut(s)	155, 340, 375, 384
MboI	GATC	4 cut(s)	153, 338, 373, 382
MboII	GAAGA	1 cut(s)	377
MfeI	CAATTG	1 cut(s)	285
MluCI	AATT	2 cut(s)	45, 285
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	1 cut(s)	399
MseI	TTAA	1 cut(s)	98
MslI	CAYNNNNRTG	2 cut(s)	368, 397
MspI	CCGG	2 cut(s)	56, 66
MspR9I	CCNGG	4 cut(s)	56, 57, 66, 311
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	101, 287
NciI	CCSGG	3 cut(s)	56, 57, 66
NdeII	GATC	4 cut(s)	153, 338, 373, 382
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	63
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
RseI	CAYNNNNRTG	2 cut(s)	368, 397
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	4 cut(s)	153, 338, 373, 382
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	4 cut(s)	56, 57, 66, 311
SetI	ASST	4 cut(s)	106, 203, 283, 348
SmaI	CCCGGG	1 cut(s)	57
SmiMI	CAYNNNNRTG	2 cut(s)	368, 397
Sse9I	AATT	2 cut(s)	45, 285
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	3 cut(s)	147, 162, 278
StyD4I	CCNGG	4 cut(s)	54, 55, 64, 309
TaaI	ACNGT	1 cut(s)	228
TaqI	TCGA	4 cut(s)	156, 193, 261, 341
TasI	AATT	2 cut(s)	45, 285
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	55
TspRI	CASTG	1 cut(s)	370
XmaI	CCCGGG	1 cut(s)	55
XspI	CTAG	3 cut(s)	147, 162, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.