Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026667.1

Orthogroup ID

OG0003364

Physical Location & Seq

Genomic Coordinates Reverse (-)

1406 .. 1969

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026667.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgccgtcgaagcggtcgtttttcgcgatcgggtcgcgcgggagtcgggtctatgttgcgggcgggcacgacgagagcaagaacgcgctgaaatcggcgtgggtttacgatctgaggcgggacgagtgggccgagttgactcagatgagtcgggagcgggacgagtgtcacggggtggtgatcggggacgagttctgggtggtgagcgggtacgggacggcgagccagggagcgtttgagggcggagcggaggcgttggacctcgggtcgggtcggtggaggcgggtcgagggcgcgtgggaggaaggggagtgtccgagggcgtgtgggggtggagttgggagagatgggaggctggtgagttgggccgagttaggcccggcggtccgggtcgggacccgtggggtgaatctcgggtcccgggtcctggtgatgggttcggagtacgatggcgggagccaaggggtattcatgaaggatgggcaaaacggtaaattagagagggttagcgtgcctgaagagttttctgggtttattcagtcaggctgttgcgttgagatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0019222 GO:0031323 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

187

Amino Acids

20.16

Weight (kDa)

5.2

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44130 AT3G59940
fragaria_vesca	FvH4_3g45300 FvH4_6g21491
malus_domestica	MD03G1006500.v1.1 MD11G1009500.v1.1 MD12G1051200.v1.1 MD14G1050600.v1.1
prunus_persica	Prupe.6G006200_v2.0.a1 Prupe.7G085300_v2.0.a1
pyrus_communis	pycom03g00690 pycom11g00610 pycom12g04560 pycom14g04170
rosa_chinensis	RchiOBHm_Chr3g0478681 RchiOBHm_Chr5g0082971
rosa_laevigata	RLG00000023633 RLG00000037006
rosa_multiflora	Rmu_co7966478.1_g000001 Rmu_sc0002454.1_g000004 Rmu_sc0008074.1_g000020 Rmu_sc0026666.1_g000001 Rmu_sc0026667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403200
rosa_rugosa	Rorug03G0166900 Rorug05G0481800
rosa_samantha	Rh3AG219200 Rh3BG250900 Rh3CG247700 Rh3DG244000 Rh5AG531400 Rh5BG558400 Rh5CG581300 Rh5DG567200
rosa_wichuraiana	Rw3G019710 Rw5G049720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	157, 207, 248
AccII	CGCG	5 cut(s)	26, 37, 39, 86, 296
AcuI	CTGAAG	1 cut(s)	537
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	2 cut(s)	212, 446
AfiI	CCNNNNNNNGG	3 cut(s)	268, 427, 433
AhdI	GACNNNNNGTC	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	225, 426
Ama87I	CYCGRG	3 cut(s)	263, 413, 420
AoxI	GGCC	3 cut(s)	129, 366, 376
AspLEI	GCGC	3 cut(s)	39, 88, 296
AspS9I	GGNCC	8 cut(s)	129, 259, 366, 377, 385, 396, 417, 424
AsuC2I	CCSGG	4 cut(s)	380, 389, 421, 422
AsuHPI	GGTGA	5 cut(s)	190, 214, 370, 418, 442
AvaI	CYCGRG	3 cut(s)	263, 413, 420
AvaII	GGWCC	5 cut(s)	259, 385, 396, 417, 424
BaeGI	GKGCMC	1 cut(s)	69
BccI	CCATC	4 cut(s)	341, 427, 443, 473
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	2 cut(s)	227, 428
BcnI	CCSGG	4 cut(s)	380, 389, 421, 422
Bme1390I	CCNGG	6 cut(s)	227, 380, 389, 421, 422, 428
Bme18I	GGWCC	5 cut(s)	259, 385, 396, 417, 424
BmeRI	GACNNNNNGTC	1 cut(s)	265
BmeT110I	CYCGRG	3 cut(s)	263, 413, 420
BmgT120I	GGNCC	8 cut(s)	129, 259, 366, 377, 385, 396, 417, 424
BmiI	GGNNCC	6 cut(s)	397, 398, 418, 419, 425, 458
BmrFI	CCNGG	6 cut(s)	227, 380, 389, 421, 422, 428
BoxI	GACNNNNGTC	1 cut(s)	165
BpuMI	CCSGG	4 cut(s)	380, 389, 421, 422
BsaJI	CCNNGG	6 cut(s)	226, 262, 317, 400, 420, 460
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 427, 433
BseBI	CCWGG	2 cut(s)	227, 428
BseDI	CCNNGG	6 cut(s)	226, 262, 317, 400, 420, 460
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	3 cut(s)	268, 427, 433
BseMII	CTCAG	2 cut(s)	104, 155
BseSI	GKGCMC	1 cut(s)	69
Bsh1236I	CGCG	5 cut(s)	26, 37, 39, 86, 296
Bsh1285I	CGRYCG	2 cut(s)	17, 30
BshFI	GGCC	3 cut(s)	131, 368, 378
BsiEI	CGRYCG	2 cut(s)	17, 30
BsiHKCI	CYCGRG	3 cut(s)	263, 413, 420
BsiSI	CCGG	3 cut(s)	380, 388, 421
BslFI	GGGAC	6 cut(s)	134, 173, 200, 229, 403, 409
BslI	CCNNNNNNNGG	3 cut(s)	268, 427, 433
BsmFI	GGGAC	6 cut(s)	134, 173, 200, 229, 403, 409
BsnI	GGCC	3 cut(s)	131, 368, 378
BsoBI	CYCGRG	3 cut(s)	263, 413, 420
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	3 cut(s)	27, 109, 180
Bsp68I	TCGCGA	1 cut(s)	26
BspANI	GGCC	3 cut(s)	131, 368, 378
BspCNI	CTCAG	2 cut(s)	105, 154
BspFNI	CGCG	5 cut(s)	26, 37, 39, 86, 296
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	6 cut(s)	397, 398, 418, 419, 425, 458
BsrBI	CCGCTC	3 cut(s)	157, 207, 248
BssECI	CCNNGG	6 cut(s)	226, 262, 317, 400, 420, 460
BssMI	GATC	3 cut(s)	27, 109, 180
BssT1I	CCWWGG	1 cut(s)	460
Bst2UI	CCWGG	2 cut(s)	227, 428
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	513
BstC8I	GCNNGC	4 cut(s)	61, 65, 223, 512
BstDEI	CTNAG	2 cut(s)	113, 141
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	5 cut(s)	26, 37, 39, 86, 296
BstHHI	GCGC	3 cut(s)	39, 88, 296
BstKTI	GATC	3 cut(s)	30, 112, 183
BstMBI	GATC	3 cut(s)	27, 109, 180
BstMCI	CGRYCG	2 cut(s)	17, 30
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	227, 428
BstPAI	GACNNNNGTC	1 cut(s)	165
BstSCI	CCNGG	6 cut(s)	225, 378, 387, 419, 420, 426
BstSLI	GKGCMC	1 cut(s)	69
BstUI	CGCG	5 cut(s)	26, 37, 39, 86, 296
BsuRI	GGCC	3 cut(s)	131, 368, 378
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	1 cut(s)	484
BtuMI	TCGCGA	1 cut(s)	26
Cac8I	GCNNGC	4 cut(s)	61, 65, 223, 512
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	3 cut(s)	39, 88, 296
Cfr13I	GGNCC	8 cut(s)	129, 259, 366, 377, 385, 396, 417, 424
Cfr9I	CCCGGG	1 cut(s)	420
CpoI	CGGWCCG	1 cut(s)	385
Csp6I	GTAC	2 cut(s)	211, 445
CspI	CGGWCCG	1 cut(s)	385
CviAII	CATG	1 cut(s)	472
CviJI	RGCY	7 cut(s)	131, 225, 355, 368, 378, 459, 546
CviKI_1	RGCY	7 cut(s)	131, 225, 355, 368, 378, 459, 546
CviQI	GTAC	2 cut(s)	211, 445
DdeI	CTNAG	2 cut(s)	113, 141
DpnI	GATC	3 cut(s)	29, 111, 182
DpnII	GATC	3 cut(s)	27, 109, 180
DraIII	CACNNNGTG	1 cut(s)	175
DriI	GACNNNNNGTC	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	513
Eam1105I	GACNNNNNGTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	513
EciI	GGCGGA	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	460
Eco47I	GGWCC	5 cut(s)	259, 385, 396, 417, 424
Eco57I	CTGAAG	1 cut(s)	537
Eco88I	CYCGRG	3 cut(s)	263, 413, 420
EcoO109I	RGGNCCY	3 cut(s)	396, 417, 424
EcoRII	CCWGG	2 cut(s)	225, 426
EcoT14I	CCWWGG	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	1 cut(s)	475
FaiI	YATR	2 cut(s)	54, 473
FaqI	GGGAC	6 cut(s)	134, 173, 200, 229, 403, 409
FatI	CATG	1 cut(s)	471
FauI	CCCGC	8 cut(s)	32, 52, 56, 111, 150, 200, 276, 446
FokI	GGATG	1 cut(s)	491
GlaI	GCGC	3 cut(s)	38, 87, 295
HaeIII	GGCC	3 cut(s)	131, 368, 378
HapII	CCGG	3 cut(s)	380, 388, 421
HhaI	GCGC	3 cut(s)	39, 88, 296
Hin1II	CATG	1 cut(s)	475
Hin6I	GCGC	3 cut(s)	37, 86, 294
HinP1I	GCGC	3 cut(s)	37, 86, 294
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	4 cut(s)	43, 139, 148, 409
HpaII	CCGG	3 cut(s)	380, 388, 421
HphI	GGTGA	5 cut(s)	190, 214, 370, 418, 442
Hpy166II	GTNNAC	2 cut(s)	106, 138
Hpy188I	TCNGA	4 cut(s)	114, 144, 318, 442
Hpy188III	TCNNGA	4 cut(s)	25, 152, 394, 472
Hpy8I	GTNNAC	2 cut(s)	106, 138
Hpy99I	CGWCG	2 cut(s)	10, 74
HpyAV	CCTTC	2 cut(s)	299, 469
HpyCH4III	ACNGT	1 cut(s)	491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	113, 141
Hsp92II	CATG	1 cut(s)	475
HspAI	GCGC	3 cut(s)	37, 86, 294
KflI	GGGWCCC	2 cut(s)	396, 417
Kzo9I	GATC	3 cut(s)	27, 109, 180
LmnI	GCTCC	4 cut(s)	154, 230, 245, 456
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	3 cut(s)	29, 111, 182
MbiI	CCGCTC	3 cut(s)	157, 207, 248
MboI	GATC	3 cut(s)	27, 109, 180
MboII	GAAGA	1 cut(s)	530
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	494
MlyI	GAGTC	3 cut(s)	52, 133, 157
MmeI	TCCRAC	1 cut(s)	237
MspI	CCGG	3 cut(s)	380, 388, 421
MspR9I	CCNGG	6 cut(s)	227, 380, 389, 421, 422, 428
MvaI	CCWGG	2 cut(s)	227, 428
MvnI	CGCG	5 cut(s)	26, 37, 39, 86, 296
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	4 cut(s)	380, 389, 421, 422
NdeII	GATC	3 cut(s)	27, 109, 180
NlaIII	CATG	1 cut(s)	475
NlaIV	GGNNCC	6 cut(s)	397, 398, 418, 419, 425, 458
NmeAIII	GCCGAG	2 cut(s)	157, 394
NmuCI	GTSAC	1 cut(s)	167
NruI	TCGCGA	1 cut(s)	26
PagI	TCATGA	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	3 cut(s)	14, 23, 129
PfeI	GAWTC	1 cut(s)	409
Ple19I	CGATCG	1 cut(s)	30
PleI	GAGTC	3 cut(s)	51, 133, 156
PpsI	GAGTC	3 cut(s)	51, 133, 156
PpuMI	RGGWCCY	3 cut(s)	396, 417, 424
PshAI	GACNNNNGTC	1 cut(s)	165
Psp5II	RGGWCCY	3 cut(s)	396, 417, 424
Psp6I	CCWGG	2 cut(s)	225, 426
PspGI	CCWGG	2 cut(s)	225, 426
PspN4I	GGNNCC	6 cut(s)	397, 398, 418, 419, 425, 458
PspPI	GGNCC	8 cut(s)	129, 259, 366, 377, 385, 396, 417, 424
PspPPI	RGGWCCY	3 cut(s)	396, 417, 424
PvuI	CGATCG	1 cut(s)	30
RruI	TCGCGA	1 cut(s)	26
RsaI	GTAC	2 cut(s)	212, 446
RsaNI	GTAC	2 cut(s)	211, 445
Rsr2I	CGGWCCG	1 cut(s)	385
RsrII	CGGWCCG	1 cut(s)	385
Sau3AI	GATC	3 cut(s)	27, 109, 180
Sau96I	GGNCC	8 cut(s)	129, 259, 366, 377, 385, 396, 417, 424
SchI	GAGTC	3 cut(s)	52, 133, 157
ScrFI	CCNGG	6 cut(s)	227, 380, 389, 421, 422, 428
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	1 cut(s)	264
SinI	GGWCC	5 cut(s)	259, 385, 396, 417, 424
SmaI	CCCGGG	1 cut(s)	422
Sse9I	AATT	1 cut(s)	494
StyD4I	CCNGG	6 cut(s)	225, 378, 387, 419, 420, 426
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	491
TaqI	TCGA	2 cut(s)	8, 288
TasI	AATT	1 cut(s)	494
TfiI	GAWTC	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	460, 488
TspMI	CCCGGG	1 cut(s)	420
VpaK11BI	GGWCC	5 cut(s)	259, 385, 396, 417, 424
XmaI	CCCGGG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.