Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003364

Physical Location & Seq

Genomic Coordinates Forward (+)

12032265 .. 12033951

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G085300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCAAATGACCGAGTTAATACCTGGTCTACCAGAGGAACTCGGGCACGAGTGCCTGACTCGTTTGCACTACTCGACTCACCGAGTCGCCTCACGCGTTTGCCGCCGCTGGCAGGACATGCTTCAAAGTCTGGATTTTTACAACCACAGAAAGCAATCCGGGCGCACCCACAAGCCCGCTTGCCTCGTCCAGGCGCTTCCGGTTCAGACCAGGGTTGACGAGACCAAACCGGGTGGACCGCCCGTTTACGGCGTCTCGGTTTTTGACCCTGTGAGTGGGAGCTGGGACCGGGTGGACCCGGTTCCGAAGTACCCACATGGGCTTCCGCCGTTCTGCCAAGTGACGGCGTGCGAGGGCAAGCTCGTGTTGATGGGCGGGTGGGACCCGGCGAGTTACCAGCCCGTGAGGGACGTGTTCGTGTACGAGTTCACGACTCAGAGGTGGACTCGGGGAAAGGATATGCCGGAGACCCGGTCGTTCTTCGCCGCCGGCGAGTTCAACGGCCGGGTCTACGTCGCCGGAGGCCACGACCAGAACAAGAACGCGTTGAAATCGGCGAGGGTCTACGACGTGAGGGAGAACGAGTGGAGCGAGTTGCCTGGGATGAGTCAGGAGCGAGACGAGTGCGAGGGGTTTGTTTCCGGGTCGGAGTTTTGGGTCGTGAGCGGGTATGGTACGGACAGTCAAGGGGGCTTCGTGGGGTGCGCTGAGGTTTATGAAATCGGGTCGGGTCAGTGGAGGCGGGTTGAGGACGCGTGGCGTGCAGGTCAGTGCCCGAGGTCTTGCGTTGGGGTTGGGAAGGATGGGAAGCTGTTTTGTTGGGGCGACTGTGACTCGCGGGTTCGGGTCGGTACCAGCGCGGTTGAGTTGGGCCCGTGGGCGTTGGTATCAGGATCGGCTTACCAAGGCGGGGCGCAAGGGTCATTTTTGGTTGAAGGGCAAAATGGTAAATTGAAGAATGTGGAAGCTCCTGATGAGTTCTCTGGGTTCGTGCAGTCCGGTTGCTGCGTGGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030162 GO:0030163 GO:0031323 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043455 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080036 GO:0080037 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

340

Amino Acids

37.49

Weight (kDa)

5.6

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44130 AT3G59940
fragaria_vesca	FvH4_3g45300 FvH4_6g21491
malus_domestica	MD03G1006500.v1.1 MD11G1009500.v1.1 MD12G1051200.v1.1 MD14G1050600.v1.1
prunus_persica	Prupe.6G006200_v2.0.a1 Prupe.7G085300_v2.0.a1
pyrus_communis	pycom03g00690 pycom11g00610 pycom12g04560 pycom14g04170
rosa_chinensis	RchiOBHm_Chr3g0478681 RchiOBHm_Chr5g0082971
rosa_laevigata	RLG00000023633 RLG00000037006
rosa_multiflora	Rmu_co7966478.1_g000001 Rmu_sc0002454.1_g000004 Rmu_sc0008074.1_g000020 Rmu_sc0026666.1_g000001 Rmu_sc0026667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403200
rosa_rugosa	Rorug03G0166900 Rorug05G0481800
rosa_samantha	Rh3AG219200 Rh3BG250900 Rh3CG247700 Rh3DG244000 Rh5AG531400 Rh5BG558400 Rh5CG581300 Rh5DG567200
rosa_wichuraiana	Rw3G019710 Rw5G049720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	755
Acc65I	GGTACC	1 cut(s)	851
AccB1I	GGYRCC	1 cut(s)	851
AccBSI	CCGCTC	1 cut(s)	666
AccI	GTMKAC	3 cut(s)	28, 510, 564
AccII	CGCG	5 cut(s)	96, 545, 755, 838, 860
AclWI	GGATC	1 cut(s)	901
AcoI	YGGCCR	1 cut(s)	502
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	4 cut(s)	311, 422, 676, 853
AfiI	CCNNNNNNNGG	6 cut(s)	112, 190, 248, 275, 343, 910
AflIII	ACRYGT	4 cut(s)	94, 411, 543, 753
AgsI	TTSAA	5 cut(s)	125, 499, 550, 935, 955
AjiI	CACGTC	2 cut(s)	412, 571
AjnI	CCWGG	4 cut(s)	22, 189, 209, 598
AluBI	AGCT	4 cut(s)	282, 361, 811, 968
AluI	AGCT	4 cut(s)	282, 361, 811, 968
Alw26I	GTCTC	4 cut(s)	215, 259, 461, 612
AlwI	GGATC	1 cut(s)	901
Ama87I	CYCGRG	3 cut(s)	41, 447, 775
AoxI	GGCC	3 cut(s)	502, 523, 871
ApaI	GGGCCC	1 cut(s)	875
ApeKI	GCWGC	1 cut(s)	1005
Asp718I	GGTACC	1 cut(s)	851
AspLEI	GCGC	5 cut(s)	165, 196, 707, 860, 916
AspS9I	GGNCC	6 cut(s)	236, 286, 295, 382, 871, 872
AsuC2I	CCSGG	8 cut(s)	160, 231, 290, 299, 386, 472, 506, 643
AsuHPI	GGTGA	1 cut(s)	71
AvaI	CYCGRG	3 cut(s)	41, 447, 775
AvaII	GGWCC	4 cut(s)	236, 286, 295, 382
BaeGI	GKGCMC	3 cut(s)	48, 776, 875
BanI	GGYRCC	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	875
BauI	CACGAG	2 cut(s)	47, 362
BbvCI	CCTCAGC	1 cut(s)	708
BbvI	GCAGC	1 cut(s)	992
BccI	CCATC	2 cut(s)	364, 797
BceAI	ACGGC	4 cut(s)	265, 313, 360, 517
BcgI	CGANNNNNNTGC	2 cut(s)	606, 640
BciT130I	CCWGG	4 cut(s)	24, 191, 211, 600
BcnI	CCSGG	8 cut(s)	160, 231, 290, 299, 386, 472, 506, 643
BcoDI	GTCTC	4 cut(s)	215, 259, 461, 612
BfoI	RGCGCY	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	755
BisI	GCNGC	4 cut(s)	103, 106, 486, 1006
BlsI	GCNGC	4 cut(s)	104, 107, 487, 1007
Bme18I	GGWCC	4 cut(s)	236, 286, 295, 382
BmeT110I	CYCGRG	3 cut(s)	41, 447, 775
BmgBI	CACGTC	2 cut(s)	412, 571
BmgT120I	GGNCC	6 cut(s)	236, 286, 295, 382, 871, 872
BmiI	GGNNCC	7 cut(s)	287, 297, 303, 383, 384, 853, 873
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
Bpu10I	CCTNAGC	1 cut(s)	708
BpuMI	CCSGG	8 cut(s)	160, 231, 290, 299, 386, 472, 506, 643
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	2 cut(s)	215, 461
BsaJI	CCNNGG	5 cut(s)	210, 599, 776, 875, 904
BsaWI	WCCGGW	2 cut(s)	199, 998
BsaXI	ACNNNNNCTCC	4 cut(s)	458, 488, 569, 599
Bsc4I	CCNNNNNNNGG	6 cut(s)	112, 190, 248, 275, 343, 910
Bse118I	RCCGGY	1 cut(s)	488
BseBI	CCWGG	4 cut(s)	24, 191, 211, 600
BseDI	CCNNGG	5 cut(s)	210, 599, 776, 875, 904
BseGI	GGATG	2 cut(s)	609, 808
BseLI	CCNNNNNNNGG	6 cut(s)	112, 190, 248, 275, 343, 910
BseMII	CTCAG	2 cut(s)	449, 699
BseSI	GKGCMC	3 cut(s)	48, 776, 875
BseX3I	CGGCCG	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	992
BseYI	CCCAGC	1 cut(s)	282
BsgI	GTGCAG	2 cut(s)	783, 1013
Bsh1236I	CGCG	5 cut(s)	96, 545, 755, 838, 860
Bsh1285I	CGRYCG	2 cut(s)	476, 505
BshFI	GGCC	3 cut(s)	504, 525, 873
BshNI	GGYRCC	1 cut(s)	851
BsiEI	CGRYCG	2 cut(s)	476, 505
BsiHKCI	CYCGRG	3 cut(s)	41, 447, 775
BslFI	GGGAC	3 cut(s)	299, 395, 422
BslI	CCNNNNNNNGG	6 cut(s)	112, 190, 248, 275, 343, 910
BsmAI	GTCTC	4 cut(s)	215, 259, 461, 612
BsmBI	CGTCTC	2 cut(s)	259, 612
BsmFI	GGGAC	3 cut(s)	299, 395, 422
BsnI	GGCC	3 cut(s)	504, 525, 873
Bso31I	GGTCTC	2 cut(s)	215, 461
BsoBI	CYCGRG	3 cut(s)	41, 447, 775
Bsp120I	GGGCCC	1 cut(s)	871
Bsp1286I	GDGCHC	3 cut(s)	48, 776, 875
Bsp143I	GATC	1 cut(s)	893
BspANI	GGCC	3 cut(s)	504, 525, 873
BspCNI	CTCAG	2 cut(s)	448, 700
BspFNI	CGCG	5 cut(s)	96, 545, 755, 838, 860
BspLI	GGNNCC	7 cut(s)	287, 297, 303, 383, 384, 853, 873
BspMI	ACCTGC	1 cut(s)	755
BspPI	GGATC	1 cut(s)	901
BspT107I	GGYRCC	1 cut(s)	851
BspTNI	GGTCTC	2 cut(s)	215, 461
BsrBI	CCGCTC	1 cut(s)	666
BsrFI	RCCGGY	1 cut(s)	488
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	5 cut(s)	210, 599, 776, 875, 904
BssMI	GATC	1 cut(s)	893
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	2 cut(s)	47, 362
BssT1I	CCWWGG	1 cut(s)	904
Bst2BI	CACGAG	2 cut(s)	47, 362
Bst2UI	CCWGG	4 cut(s)	24, 191, 211, 600
Bst4CI	ACNGT	2 cut(s)	683, 830
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstC8I	GCNNGC	7 cut(s)	110, 177, 181, 349, 359, 490, 762
BstDEI	CTNAG	2 cut(s)	435, 708
BstDSI	CCRYGG	1 cut(s)	875
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	609, 808
BstFNI	CGCG	5 cut(s)	96, 545, 755, 838, 860
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	5 cut(s)	165, 196, 707, 860, 916
BstKTI	GATC	1 cut(s)	896
BstMAI	GTCTC	4 cut(s)	215, 259, 461, 612
BstMBI	GATC	1 cut(s)	893
BstMCI	CGRYCG	2 cut(s)	476, 505
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 118, 160, 761
BstNI	CCWGG	4 cut(s)	24, 191, 211, 600
BstNSI	RCATGY	1 cut(s)	121
BstSLI	GKGCMC	3 cut(s)	48, 776, 875
BstUI	CGCG	5 cut(s)	96, 545, 755, 838, 860
BstV1I	GCAGC	1 cut(s)	992
BstZI	CGGCCG	1 cut(s)	502
BsuRI	GGCC	3 cut(s)	504, 525, 873
BtgI	CCRYGG	1 cut(s)	875
BtrI	CACGTC	2 cut(s)	412, 571
BtsCI	GGATG	2 cut(s)	609, 808
BtsIMutI	CAGTG	2 cut(s)	740, 776
BveI	ACCTGC	1 cut(s)	755
Cac8I	GCNNGC	7 cut(s)	110, 177, 181, 349, 359, 490, 762
CfoI	GCGC	5 cut(s)	165, 196, 707, 860, 916
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	6 cut(s)	236, 286, 295, 382, 871, 872
CseI	GACGC	2 cut(s)	241, 761
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	4 cut(s)	310, 421, 675, 852
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	2 cut(s)	118, 317
CviQI	GTAC	4 cut(s)	310, 421, 675, 852
DdeI	CTNAG	2 cut(s)	435, 708
DpnI	GATC	1 cut(s)	895
DpnII	GATC	1 cut(s)	893
EaeI	YGGCCR	1 cut(s)	502
EagI	CGGCCG	1 cut(s)	502
EciI	GGCGGA	1 cut(s)	315
EclXI	CGGCCG	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	904
Eco24I	GRGCYC	1 cut(s)	875
Eco31I	GGTCTC	2 cut(s)	215, 461
Eco47I	GGWCC	4 cut(s)	236, 286, 295, 382
Eco52I	CGGCCG	1 cut(s)	502
Eco88I	CYCGRG	3 cut(s)	41, 447, 775
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	4 cut(s)	22, 189, 209, 598
EcoT14I	CCWWGG	1 cut(s)	904
EcoT38I	GRGCYC	1 cut(s)	875
ErhI	CCWWGG	1 cut(s)	904
Esp3I	CGTCTC	2 cut(s)	259, 612
FaeI	CATG	2 cut(s)	121, 320
FaiI	YATR	5 cut(s)	119, 318, 461, 672, 717
FaqI	GGGAC	3 cut(s)	299, 395, 422
FatI	CATG	2 cut(s)	117, 316
FauI	CCCGC	6 cut(s)	184, 368, 659, 735, 831, 902
FblI	GTMKAC	3 cut(s)	28, 510, 564
Fnu4HI	GCNGC	4 cut(s)	103, 106, 486, 1006
FokI	GGATG	2 cut(s)	616, 815
FriOI	GRGCYC	1 cut(s)	875
Fsp4HI	GCNGC	4 cut(s)	103, 106, 486, 1006
GlaI	GCGC	5 cut(s)	164, 195, 706, 859, 915
GluI	GCNGC	4 cut(s)	103, 106, 486, 1006
GsaI	CCCAGC	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	3 cut(s)	504, 525, 873
HgaI	GACGC	2 cut(s)	241, 761
HhaI	GCGC	5 cut(s)	165, 196, 707, 860, 916
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	121, 320
Hin6I	GCGC	5 cut(s)	163, 194, 705, 858, 914
HinP1I	GCGC	5 cut(s)	163, 194, 705, 858, 914
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	7 cut(s)	58, 76, 84, 433, 445, 607, 833
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	4 cut(s)	207, 306, 438, 649
Hpy188III	TCNNGA	6 cut(s)	131, 430, 611, 661, 891, 971
Hpy99I	CGWCG	2 cut(s)	518, 572
HpyAV	CCTTC	2 cut(s)	793, 929
HpyCH4III	ACNGT	2 cut(s)	683, 830
HpyCH4IV	ACGT	3 cut(s)	411, 513, 570
HpyCH4V	TGCA	4 cut(s)	4, 67, 764, 994
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 118, 160, 761
HpyF3I	CTNAG	2 cut(s)	435, 708
HpySE526I	ACGT	3 cut(s)	411, 513, 570
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	121, 320
HspAI	GCGC	5 cut(s)	163, 194, 705, 858, 914
KflI	GGGWCCC	1 cut(s)	382
KpnI	GGTACC	1 cut(s)	855
KroI	GCCGGC	1 cut(s)	488
KroNI	GCCGGC	1 cut(s)	490
Kzo9I	GATC	1 cut(s)	893
LmnI	GCTCC	4 cut(s)	279, 588, 613, 973
Lsp1109I	GCAGC	1 cut(s)	992
MabI	ACCWGGT	1 cut(s)	22
MaeII	ACGT	3 cut(s)	411, 513, 570
MaeIII	GTNAC	3 cut(s)	340, 392, 830
MalI	GATC	1 cut(s)	895
MbiI	CCGCTC	1 cut(s)	666
MboI	GATC	1 cut(s)	893
MboII	GAAGA	2 cut(s)	472, 967
MhlI	GDGCHC	3 cut(s)	48, 776, 875
MluCI	AATT	1 cut(s)	950
MluI	ACGCGT	3 cut(s)	94, 543, 753
MlyI	GAGTC	7 cut(s)	52, 70, 93, 427, 439, 616, 827
MmeI	TCCRAC	1 cut(s)	627
MreI	CGCCGGCG	1 cut(s)	488
MroNI	GCCGGC	1 cut(s)	488
MseI	TTAA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	108
MvaI	CCWGG	4 cut(s)	24, 191, 211, 600
MvnI	CGCG	5 cut(s)	96, 545, 755, 838, 860
MwoI	GCNNNNNNNGC	4 cut(s)	102, 118, 160, 761
NaeI	GCCGGC	1 cut(s)	490
NciI	CCSGG	8 cut(s)	160, 231, 290, 299, 386, 472, 506, 643
NdeII	GATC	1 cut(s)	893
NgoMIV	GCCGGC	1 cut(s)	488
NlaIII	CATG	2 cut(s)	121, 320
NlaIV	GGNNCC	7 cut(s)	287, 297, 303, 383, 384, 853, 873
NmuCI	GTSAC	2 cut(s)	340, 830
NspI	RCATGY	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 489, 588
PdiI	GCCGGC	1 cut(s)	490
PflFI	GACNNNGTC	1 cut(s)	472
PkrI	GCNGC	4 cut(s)	104, 107, 487, 1007
PleI	GAGTC	7 cut(s)	52, 70, 92, 427, 439, 615, 827
PpsI	GAGTC	7 cut(s)	52, 70, 92, 427, 439, 615, 827
PpuMI	RGGWCCY	1 cut(s)	382
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	4 cut(s)	22, 189, 209, 598
PspFI	CCCAGC	1 cut(s)	282
PspGI	CCWGG	4 cut(s)	22, 189, 209, 598
PspN4I	GGNNCC	7 cut(s)	287, 297, 303, 383, 384, 853, 873
PspOMI	GGGCCC	1 cut(s)	871
PspPI	GGNCC	6 cut(s)	236, 286, 295, 382, 871, 872
PspPPI	RGGWCCY	1 cut(s)	382
PsyI	GACNNNGTC	1 cut(s)	472
RsaI	GTAC	4 cut(s)	311, 422, 676, 853
RsaNI	GTAC	4 cut(s)	310, 421, 675, 852
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	4 cut(s)	103, 106, 486, 1006
Sau3AI	GATC	1 cut(s)	893
Sau96I	GGNCC	6 cut(s)	236, 286, 295, 382, 871, 872
SchI	GAGTC	7 cut(s)	52, 70, 93, 427, 439, 616, 827
SduI	GDGCHC	3 cut(s)	48, 776, 875
SexAI	ACCWGGT	1 cut(s)	22
SgrAI	CRCCGGYG	1 cut(s)	488
SinI	GGWCC	4 cut(s)	236, 286, 295, 382
Sse9I	AATT	1 cut(s)	950
StyI	CCWWGG	1 cut(s)	904
TaaI	ACNGT	2 cut(s)	683, 830
TaiI	ACGT	3 cut(s)	414, 516, 573
TaqI	TCGA	1 cut(s)	74
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	950
TauI	GCSGC	3 cut(s)	105, 108, 488
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	2 cut(s)	740, 776
TseFI	GTSAC	2 cut(s)	340, 830
TseI	GCWGC	1 cut(s)	1005
Tsp45I	GTSAC	2 cut(s)	340, 830
TspDTI	ATGAA	1 cut(s)	732
TspGWI	ACGGA	1 cut(s)	692
TspRI	CASTG	2 cut(s)	740, 776
Tth111I	GACNNNGTC	1 cut(s)	472
VpaK11BI	GGWCC	4 cut(s)	236, 286, 295, 382
XagI	CCTNNNNNAGG	1 cut(s)	188
XceI	RCATGY	1 cut(s)	121
XmiI	GTMKAC	3 cut(s)	28, 510, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.