Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003364

Physical Location & Seq

Genomic Coordinates Reverse (-)

23972283 .. 23973290

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG247700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCAGTTGGCCGAGTTGATACCTGGTTTGCCCGAAGAAATCGCCTATGAGTGCCTGACTCGGTTGCACTACTCGGCTCACCGAGTCGCCTCCCGAGTCTGCCGCCGATGGGGGGAGCTCATTAAGAGCAGAGACTTCTACAACCACAGAAAGCAATACGGGTTCACCCACAAGGCCGCTTCTTTAATCCAAGCGCTTCCGGTCCGCACCGGGTCAGACGGGTCGAAGCCGGCCGGACCCGCAGTTTACGGCCTGTCTGTTTTCGACCCGGCGAGCGGGGACTGGGCCCGGGTCGACCCGGTTCCGGAGTACCCGGACGGGCTGCCGCTGTTCTGTCAGGTGACGAGCTCGGAGGGGAAGCTGGTGGTGATGGGCGGGTGGGACCCGGCGAGTTACCAGCCGGTGAGACACGTGTTCGTGTACGAGTTCACGACGCAGCGGTGGAGTAAAGGGAAGGACATGCCGGAGGTCCGGTCGTTCTTCGCCGCCGGGGAGCTGGACGGCCGGGTGTACGTCGCCGGAGGGCACGACGAGAACAAGAACGCGCTGAGGTCGGCGAGGGTTTACGACGTGAGGGCGGACGAGTGGGCCGAGCTGGGCGGGATGAGCGAGGAGCGGGACGAATGCGAAGGGCTCGTGAACGGGTCGGAGTTTTGGGTGGTGAGCGGGTACGGGACGGACAGCCAGGGCGGGTTTGTGGGGAGCGCGGAGGTTTATGAGATCGGGTCGGGTCGGTGGAGGCGGGTCGAGGACGCGTGGATGGCGGGTGAGTGTCCGAGGTCGTGCGTTGGGATTGGCAAGGATGGGAAGCTGTTTAGTTGGGGCGAGAGTCGGTCTGGGCCGTGCGGGGTGGAGTTGGGCCGGTGGGCCTTTGTGTCCGGGTCGGAGTATCTAGGGGGACCGCATGAGTTCTTTTTGACGGGAGGGGAAAATGGGAAATTGGAGAAGGTAGAGATGTGTGAGGAGTTCTCTGGGTTCGTTCAGTCCGGTTGCTTCGTGGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030162 GO:0030163 GO:0031323 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043455 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080036 GO:0080037 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

335

Amino Acids

36.97

Weight (kDa)

5.12

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 48	2.2e-06	F-box domain
Kelch_KLHDC2_KLHL20_DRC7	PF24681	77 - 251	8.5e-12	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	85 - 199	2.9e-08	FBX42, beta-propeller domain
Kelch_FKB95	PF25210	100 - 296	5.7e-12	FKB95, Kelch-repeats domain
Kelch_1	PF01344	112 - 155	4.6e-08	Kelch motif
Beta-prop_ATRN-LZTR1	PF24981	113 - 203	6.9e-06	Attractin/LZTR1 beta-propeller
Beta-prop_Calicin	PF13964	122 - 203	2.1e-09	Calicin, beta-propeller domain
Kelch_1	PF01344	158 - 203	9.7e-10	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44130 AT3G59940
fragaria_vesca	FvH4_3g45300 FvH4_6g21491
malus_domestica	MD03G1006500.v1.1 MD11G1009500.v1.1 MD12G1051200.v1.1 MD14G1050600.v1.1
prunus_persica	Prupe.6G006200_v2.0.a1 Prupe.7G085300_v2.0.a1
pyrus_communis	pycom03g00690 pycom11g00610 pycom12g04560 pycom14g04170
rosa_chinensis	RchiOBHm_Chr3g0478681 RchiOBHm_Chr5g0082971
rosa_laevigata	RLG00000023633 RLG00000037006
rosa_multiflora	Rmu_co7966478.1_g000001 Rmu_sc0002454.1_g000004 Rmu_sc0008074.1_g000020 Rmu_sc0026666.1_g000001 Rmu_sc0026667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403200
rosa_rugosa	Rorug03G0166900 Rorug05G0481800
rosa_samantha	Rh3AG219200 Rh3BG250900 Rh3CG247700 Rh3DG244000 Rh5AG531400 Rh5BG558400 Rh5CG581300 Rh5DG567200
rosa_wichuraiana	Rw3G019710 Rw5G049720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	276, 616, 666
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	3 cut(s)	545, 707, 755
AccIII	TCCGGA	1 cut(s)	304
AcoI	YGGCCR	3 cut(s)	9, 231, 502
AcvI	CACGTG	1 cut(s)	412
AfaI	GTAC	4 cut(s)	311, 422, 512, 671
AfeI	AGCGCT	1 cut(s)	195
AfiI	CCNNNNNNNGG	4 cut(s)	109, 112, 275, 304
AflIII	ACRYGT	3 cut(s)	409, 411, 753
AjiI	CACGTC	1 cut(s)	571
AjnI	CCWGG	2 cut(s)	22, 684
AluBI	AGCT	6 cut(s)	118, 348, 361, 496, 595, 811
AluI	AGCT	6 cut(s)	118, 348, 361, 496, 595, 811
Alw21I	GWGCWC	2 cut(s)	120, 350
Alw26I	GTCTC	2 cut(s)	126, 400
Ama87I	CYCGRG	2 cut(s)	93, 288
Aor13HI	TCCGGA	1 cut(s)	304
Aor51HI	AGCGCT	1 cut(s)	195
ApaI	GGGCCC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	322, 436
AspLEI	GCGC	3 cut(s)	196, 547, 707
AsuHPI	GGTGA	7 cut(s)	71, 157, 352, 379, 415, 673, 779
AvaI	CYCGRG	2 cut(s)	93, 288
AvaII	GGWCC	5 cut(s)	202, 236, 382, 469, 899
BaeGI	GKGCMC	2 cut(s)	289, 528
BanII	GRGCYC	4 cut(s)	120, 289, 350, 636
BauI	CACGAG	1 cut(s)	635
BbrPI	CACGTG	1 cut(s)	412
Bbv12I	GWGCWC	2 cut(s)	120, 350
BbvCI	CCTCAGC	1 cut(s)	548
BbvI	GCAGC	2 cut(s)	309, 448
BccI	CCATC	4 cut(s)	102, 364, 754, 797
BceAI	ACGGC	3 cut(s)	265, 517, 826
BciT130I	CCWGG	2 cut(s)	24, 686
BcoDI	GTCTC	2 cut(s)	126, 400
BfaI	CTAG	1 cut(s)	893
BfoI	RGCGCY	1 cut(s)	197
BisI	GCNGC	6 cut(s)	103, 177, 323, 326, 437, 486
BlsI	GCNGC	6 cut(s)	104, 178, 324, 327, 438, 487
Bme18I	GGWCC	5 cut(s)	202, 236, 382, 469, 899
BmeT110I	CYCGRG	2 cut(s)	93, 288
BmgBI	CACGTC	1 cut(s)	571
BmiI	GGNNCC	6 cut(s)	238, 287, 303, 383, 384, 900
BmrI	ACTGGG	1 cut(s)	292
BmuI	ACTGGG	1 cut(s)	292
BplI	GAGNNNNNCTC	2 cut(s)	953, 985
Bpu10I	CCTNAGC	1 cut(s)	548
BsaAI	YACGTR	1 cut(s)	412
BsaJI	CCNNGG	4 cut(s)	288, 489, 685, 776
BsaWI	WCCGGW	4 cut(s)	199, 304, 471, 986
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 112, 275, 304
Bse118I	RCCGGY	3 cut(s)	229, 400, 861
Bse1I	ACTGG	1 cut(s)	287
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	24, 686
BseDI	CCNNGG	4 cut(s)	288, 489, 685, 776
BseGI	GGATG	3 cut(s)	609, 765, 808
BseLI	CCNNNNNNNGG	4 cut(s)	109, 112, 275, 304
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	2 cut(s)	626, 977
BseSI	GKGCMC	2 cut(s)	289, 528
BseX3I	CGGCCG	2 cut(s)	231, 502
BseXI	GCAGC	2 cut(s)	309, 448
BseYI	CCCAGC	1 cut(s)	595
Bsh1236I	CGCG	3 cut(s)	545, 707, 755
Bsh1285I	CGRYCG	3 cut(s)	234, 476, 505
BsiEI	CGRYCG	3 cut(s)	234, 476, 505
BsiHKAI	GWGCWC	2 cut(s)	120, 350
BsiHKCI	CYCGRG	2 cut(s)	93, 288
BslFI	GGGAC	5 cut(s)	293, 395, 632, 688, 912
BslI	CCNNNNNNNGG	4 cut(s)	109, 112, 275, 304
BsmAI	GTCTC	2 cut(s)	126, 400
BsmFI	GGGAC	5 cut(s)	293, 395, 632, 688, 912
BsmI	GAATGC	1 cut(s)	629
BsoBI	CYCGRG	2 cut(s)	93, 288
Bsp120I	GGGCCC	1 cut(s)	285
Bsp1286I	GDGCHC	5 cut(s)	120, 289, 350, 528, 636
Bsp13I	TCCGGA	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	720
BspCNI	CTCAG	1 cut(s)	540
BspEI	TCCGGA	1 cut(s)	304
BspFNI	CGCG	3 cut(s)	545, 707, 755
BspLI	GGNNCC	6 cut(s)	238, 287, 303, 383, 384, 900
BsrBI	CCGCTC	3 cut(s)	276, 616, 666
BsrFI	RCCGGY	3 cut(s)	229, 400, 861
BsrI	ACTGG	1 cut(s)	287
BssAI	RCCGGY	3 cut(s)	229, 400, 861
BssECI	CCNNGG	4 cut(s)	288, 489, 685, 776
BssMI	GATC	1 cut(s)	720
BssSI	CACGAG	1 cut(s)	635
Bst2BI	CACGAG	1 cut(s)	635
Bst2UI	CCWGG	2 cut(s)	24, 686
BstBAI	YACGTR	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	231, 274
BstDEI	CTNAG	1 cut(s)	548
BstF5I	GGATG	3 cut(s)	609, 765, 808
BstFNI	CGCG	3 cut(s)	545, 707, 755
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	3 cut(s)	196, 547, 707
BstKTI	GATC	1 cut(s)	723
BstMAI	GTCTC	2 cut(s)	126, 400
BstMBI	GATC	1 cut(s)	720
BstMCI	CGRYCG	3 cut(s)	234, 476, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 606, 761
BstNI	CCWGG	2 cut(s)	24, 686
BstNSI	RCATGY	1 cut(s)	463
BstSLI	GKGCMC	2 cut(s)	289, 528
BstUI	CGCG	3 cut(s)	545, 707, 755
BstV1I	GCAGC	2 cut(s)	309, 448
BstZI	CGGCCG	2 cut(s)	231, 502
BtrI	CACGTC	1 cut(s)	571
BtsCI	GGATG	3 cut(s)	609, 765, 808
Cac8I	GCNNGC	2 cut(s)	231, 274
CfoI	GCGC	3 cut(s)	196, 547, 707
Cfr10I	RCCGGY	3 cut(s)	229, 400, 861
Cfr9I	CCCGGG	1 cut(s)	288
CpoI	CGGWCCG	1 cut(s)	202
CseI	GACGC	2 cut(s)	442, 761
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	4 cut(s)	310, 421, 511, 670
CspI	CGGWCCG	1 cut(s)	202
CviAII	CATG	2 cut(s)	460, 905
CviQI	GTAC	4 cut(s)	310, 421, 511, 670
DdeI	CTNAG	1 cut(s)	548
DpnI	GATC	1 cut(s)	722
DpnII	GATC	1 cut(s)	720
EaeI	YGGCCR	3 cut(s)	9, 231, 502
EagI	CGGCCG	2 cut(s)	231, 502
EciI	GGCGGA	1 cut(s)	593
Ecl136II	GAGCTC	2 cut(s)	118, 348
EclXI	CGGCCG	2 cut(s)	231, 502
Eco24I	GRGCYC	4 cut(s)	120, 289, 350, 636
Eco47I	GGWCC	5 cut(s)	202, 236, 382, 469, 899
Eco47III	AGCGCT	1 cut(s)	195
Eco52I	CGGCCG	2 cut(s)	231, 502
Eco53kI	GAGCTC	2 cut(s)	118, 348
Eco72I	CACGTG	1 cut(s)	412
Eco88I	CYCGRG	2 cut(s)	93, 288
EcoICRI	GAGCTC	2 cut(s)	118, 348
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	2 cut(s)	22, 684
EcoT38I	GRGCYC	4 cut(s)	120, 289, 350, 636
FaeI	CATG	2 cut(s)	463, 908
FaiI	YATR	5 cut(s)	48, 461, 717, 906, 1006
FaqI	GGGAC	5 cut(s)	293, 395, 632, 688, 912
FatI	CATG	2 cut(s)	459, 904
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	6 cut(s)	103, 177, 323, 326, 437, 486
FokI	GGATG	3 cut(s)	616, 772, 815
FriOI	GRGCYC	4 cut(s)	120, 289, 350, 636
Fsp4HI	GCNGC	6 cut(s)	103, 177, 323, 326, 437, 486
FspBI	CTAG	1 cut(s)	893
GlaI	GCGC	3 cut(s)	195, 546, 706
GluI	GCNGC	6 cut(s)	103, 177, 323, 326, 437, 486
GsaI	CCCAGC	1 cut(s)	599
HaeII	RGCGCY	1 cut(s)	197
HgaI	GACGC	2 cut(s)	442, 761
HhaI	GCGC	3 cut(s)	196, 547, 707
Hin1II	CATG	2 cut(s)	463, 908
Hin6I	GCGC	3 cut(s)	194, 545, 705
HinP1I	GCGC	3 cut(s)	194, 545, 705
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	4 cut(s)	58, 84, 96, 829
HphI	GGTGA	7 cut(s)	71, 157, 352, 379, 415, 673, 779
Hpy166II	GTNNAC	8 cut(s)	165, 247, 295, 421, 429, 511, 565, 640
Hpy188I	TCNGA	5 cut(s)	217, 352, 649, 777, 886
Hpy188III	TCNNGA	4 cut(s)	93, 305, 430, 637
Hpy8I	GTNNAC	8 cut(s)	165, 247, 295, 421, 429, 511, 565, 640
Hpy99I	CGWCG	4 cut(s)	436, 518, 533, 572
HpyAV	CCTTC	3 cut(s)	448, 623, 940
HpyCH4IV	ACGT	3 cut(s)	411, 513, 570
HpyCH4V	TGCA	2 cut(s)	4, 67
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 606, 761
HpyF3I	CTNAG	1 cut(s)	548
HpySE526I	ACGT	3 cut(s)	411, 513, 570
Hsp92II	CATG	2 cut(s)	463, 908
HspAI	GCGC	3 cut(s)	194, 545, 705
KflI	GGGWCCC	1 cut(s)	382
Kpn2I	TCCGGA	1 cut(s)	304
KroI	GCCGGC	1 cut(s)	229
KroNI	GCCGGC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	720
LmnI	GCTCC	4 cut(s)	115, 493, 613, 702
Lsp1109I	GCAGC	2 cut(s)	309, 448
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	1 cut(s)	893
MaeII	ACGT	3 cut(s)	411, 513, 570
MaeIII	GTNAC	2 cut(s)	340, 392
MalI	GATC	1 cut(s)	722
MbiI	CCGCTC	3 cut(s)	276, 616, 666
MboI	GATC	1 cut(s)	720
MboII	GAAGA	2 cut(s)	47, 472
MhlI	GDGCHC	5 cut(s)	120, 289, 350, 528, 636
MluCI	AATT	1 cut(s)	938
MluI	ACGCGT	1 cut(s)	753
MlyI	GAGTC	4 cut(s)	52, 93, 105, 838
MmeI	TCCRAC	2 cut(s)	627, 864
MroI	TCCGGA	1 cut(s)	304
MroNI	GCCGGC	1 cut(s)	229
MseI	TTAA	2 cut(s)	123, 185
MspA1I	CMGCKG	2 cut(s)	328, 439
Mva1269I	GAATGC	1 cut(s)	629
MvaI	CCWGG	2 cut(s)	24, 686
MvnI	CGCG	3 cut(s)	545, 707, 755
MwoI	GCNNNNNNNGC	3 cut(s)	239, 606, 761
NaeI	GCCGGC	1 cut(s)	231
NdeII	GATC	1 cut(s)	720
NgoMIV	GCCGGC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	463, 908
NlaIV	GGNNCC	6 cut(s)	238, 287, 303, 383, 384, 900
NmeAIII	GCCGAG	3 cut(s)	37, 53, 616
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	588
PctI	GAATGC	1 cut(s)	629
PdiI	GCCGGC	1 cut(s)	231
PkrI	GCNGC	6 cut(s)	104, 178, 324, 327, 438, 487
PleI	GAGTC	4 cut(s)	52, 92, 104, 837
PmaCI	CACGTG	1 cut(s)	412
PmlI	CACGTG	1 cut(s)	412
PpsI	GAGTC	4 cut(s)	52, 92, 104, 837
Ppu21I	YACGTR	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	382
Psp124BI	GAGCTC	2 cut(s)	120, 350
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	2 cut(s)	22, 684
PspCI	CACGTG	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	595
PspGI	CCWGG	2 cut(s)	22, 684
PspN4I	GGNNCC	6 cut(s)	238, 287, 303, 383, 384, 900
PspOMI	GGGCCC	1 cut(s)	285
PspPPI	RGGWCCY	1 cut(s)	382
RsaI	GTAC	4 cut(s)	311, 422, 512, 671
RsaNI	GTAC	4 cut(s)	310, 421, 511, 670
Rsr2I	CGGWCCG	1 cut(s)	202
RsrII	CGGWCCG	1 cut(s)	202
SacI	GAGCTC	2 cut(s)	120, 350
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	123, 185
SatI	GCNGC	6 cut(s)	103, 177, 323, 326, 437, 486
Sau3AI	GATC	1 cut(s)	720
SchI	GAGTC	4 cut(s)	52, 93, 105, 838
SduI	GDGCHC	5 cut(s)	120, 289, 350, 528, 636
SexAI	ACCWGGT	1 cut(s)	22
SinI	GGWCC	5 cut(s)	202, 236, 382, 469, 899
SmaI	CCCGGG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	938
SspMI	CTAG	1 cut(s)	893
SstI	GAGCTC	2 cut(s)	120, 350
TaiI	ACGT	3 cut(s)	414, 516, 573
TaqI	TCGA	4 cut(s)	224, 264, 294, 747
TaqII	GACCGA	1 cut(s)	822
TasI	AATT	1 cut(s)	938
TauI	GCSGC	4 cut(s)	105, 179, 328, 488
Tru1I	TTAA	2 cut(s)	123, 185
Tru9I	TTAA	2 cut(s)	123, 185
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	322, 436
Tsp45I	GTSAC	1 cut(s)	340
TspGWI	ACGGA	1 cut(s)	692
TspMI	CCCGGG	1 cut(s)	288
VpaK11BI	GGWCC	5 cut(s)	202, 236, 382, 469, 899
XceI	RCATGY	1 cut(s)	463
XmaI	CCCGGG	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.