MD12G1051200.v1.1

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
5815473 .. 5816498
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1051200.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGGCCGAGTTACTAACCGAGTTAATACCCGGTCTGCCGGAGGAACTCGGCTACGAGTGCCTCACCCGTCTGCACTACTCGACTCACCGAGTCGCCTCCCGAGTCTGCCGCCGCTGGCAGGACCTTCTCCAAAGCCGGGAATTTTACAACCACCGGAAGGAATCAGGGCTGACCCACAAGGCGGCTTGTTTGGTTCAGGCGCTTCCGGTTCCGTCAGGATCGGACGAGGTCAAACCGGCAAAACCGCCCGGTTACGGGGTCTCAATTTTTGACTCCGTGAGTGGGAATTGGGACCGGATTGACCCGGTTCCGAAGTACCCGCACGGGCTTCCGATGTTCTGTCAGGTGACGAGCTCGGAGGGCAAGCTGGTGGTGATGGGCGGGTGGGACCCGGCGAATTACCAGCCGGTGCGAGACGTCTTCGTGTACGAGTTCACGACGCAGCGGTGGGCTCGGGGGAAGGACATGCCGGAGACCCGGTCGTTTTTCGCCGCCGGGGAGCTCGACGGGCGGGTGTACATCGCCGGCGGCCACGACGAGAACAAGAACGCGATGAAGTCAGCGAGGGTGTACGACGTGAGGGAGAACGAGTGGAGCGAGTTGCCTGAGATGAGTCGGGGGCGAGACGAGTGCGAAGGGTTCGTATCCGGGTCGGAGTTTTGGGTCGTAAGCGGGTACGCGACGGACATGCAAGGGAGGTTCGTGGGGAGCGCGGAGGTCTATGAAACAGGGCCCGGTCGGTGGAGGCTGGAGGAGGACGCGTGGCGTGCTGGTCAGTGCCCGAGGTCGTGCGTCGGGGTTGGGAAAGACGGGAAGTTCTTCTGTTGGGGTGATTGCGACCCGAGAGTTCGGGTCGGGCCTTGCGCGCTCGGGTTGGGGAAATGGACCTTCCTAGCCGGGTCGGCTTACCAGGGCGCGTCGCAGGAGGAATTTTTGGTCGAAGGGCAGAATGGTAAATTGATGAAAATGGAAACGCCCGAGGGGTTCTATGGTTTCGTGCAGTCCGGGTGCTACGTGGAAATTTGA

Protein Analysis

342

Amino Acids

38.17

Weight (kDa)

5.35

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 50 6.7e-06 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 87 - 248 2.8e-12 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 89 - 200 3.6e-09 FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1 PF24981 91 - 232 5.2e-08 Attractin/LZTR1 beta-propeller
Kelch_FKB95 PF25210 102 - 255 1.2e-12 FKB95, Kelch-repeats domain
Kelch_1 PF01344 114 - 157 8.2e-08 Kelch motif
Beta-prop_Calicin PF13964 124 - 209 1.3e-10 Calicin, beta-propeller domain
Kelch_1 PF01344 160 - 205 4.3e-12 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 420
AccII CGCG 6 cut(s) 551, 680, 713, 761, 866, 917
AclWI GGATC 1 cut(s) 226
AcoI YGGCCR 2 cut(s) 3, 529
AcsI RAATTY 3 cut(s) 140, 929, 1020
AcyI GRCGYC 1 cut(s) 417
AfaI GTAC 5 cut(s) 317, 428, 518, 572, 677
AfiI CCNNNNNNNGG 8 cut(s) 118, 136, 157, 181, 254, 255, 282, 741
AflIII ACRYGT 1 cut(s) 759
AjiI CACGTC 1 cut(s) 577
AjnI CCWGG 1 cut(s) 909
AluBI AGCT 3 cut(s) 354, 367, 502
AluI AGCT 3 cut(s) 354, 367, 502
Alw21I GWGCWC 2 cut(s) 356, 504
Alw26I GTCTC 4 cut(s) 265, 408, 467, 618
AlwI GGATC 1 cut(s) 226
Ama87I CYCGRG 6 cut(s) 99, 453, 781, 841, 869, 977
AoxI GGCC 4 cut(s) 3, 529, 731, 857
ApaI GGGCCC 1 cut(s) 735
ApeKI GCWGC 1 cut(s) 442
ApoI RAATTY 3 cut(s) 140, 929, 1020
Asp700I GAANNNNTTC 1 cut(s) 818
AspLEI GCGC 5 cut(s) 202, 713, 866, 868, 917
AspS9I GGNCC 7 cut(s) 121, 292, 388, 731, 732, 857, 885
AsuHPI GGTGA 5 cut(s) 55, 77, 358, 385, 842
AvaI CYCGRG 6 cut(s) 99, 453, 781, 841, 869, 977
AvaII GGWCC 4 cut(s) 121, 292, 388, 885
BaeGI GKGCMC 2 cut(s) 735, 782
BanII GRGCYC 4 cut(s) 356, 454, 504, 735
BbsI GAAGAC 1 cut(s) 412
Bbv12I GWGCWC 2 cut(s) 356, 504
BbvI GCAGC 1 cut(s) 454
BccI CCATC 1 cut(s) 370
BcgI CGANNNNNNTGC 4 cut(s) 612, 646, 670, 704
BciT130I CCWGG 1 cut(s) 911
BciVI GTATCC 1 cut(s) 655
BcoDI GTCTC 4 cut(s) 265, 408, 467, 618
BfaI CTAG 1 cut(s) 893
BfoI RGCGCY 1 cut(s) 203
BfuI GTATCC 1 cut(s) 655
BglI GCCNNNNNGGC 1 cut(s) 902
BisI GCNGC 6 cut(s) 109, 112, 183, 443, 492, 529
BlsI GCNGC 6 cut(s) 110, 113, 184, 444, 493, 530
Bme18I GGWCC 4 cut(s) 121, 292, 388, 885
BmeT110I CYCGRG 6 cut(s) 99, 453, 781, 841, 869, 977
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 7 cut(s) 121, 292, 388, 731, 732, 857, 885
BmiI GGNNCC 6 cut(s) 210, 293, 309, 389, 390, 733
BpiI GAAGAC 1 cut(s) 412
BpmI CTGGAG 1 cut(s) 770
BsaAI YACGTR 1 cut(s) 1015
BsaHI GRCGYC 1 cut(s) 417
BsaI GGTCTC 2 cut(s) 265, 467
BsaJI CCNNGG 4 cut(s) 495, 782, 910, 978
BsaWI WCCGGW 3 cut(s) 153, 205, 294
BsaXI ACNNNNNCTCC 6 cut(s) 464, 494, 575, 605, 746, 776
Bsc4I CCNNNNNNNGG 8 cut(s) 118, 136, 157, 181, 254, 255, 282, 741
Bse118I RCCGGY 3 cut(s) 235, 406, 524
BseBI CCWGG 1 cut(s) 911
BseDI CCNNGG 4 cut(s) 495, 782, 910, 978
BseLI CCNNNNNNNGG 8 cut(s) 118, 136, 157, 181, 254, 255, 282, 741
BseMII CTCAG 1 cut(s) 597
BsePI GCGCGC 1 cut(s) 864
BseRI GAGGAG 1 cut(s) 767
BseSI GKGCMC 2 cut(s) 735, 782
BseXI GCAGC 1 cut(s) 454
BsgI GTGCAG 2 cut(s) 56, 1019
Bsh1236I CGCG 6 cut(s) 551, 680, 713, 761, 866, 917
Bsh1285I CGRYCG 2 cut(s) 482, 739
BshFI GGCC 4 cut(s) 5, 531, 733, 859
BsiEI CGRYCG 2 cut(s) 482, 739
BsiHKAI GWGCWC 2 cut(s) 356, 504
BsiHKCI CYCGRG 6 cut(s) 99, 453, 781, 841, 869, 977
BslFI GGGAC 2 cut(s) 305, 401
BslI CCNNNNNNNGG 8 cut(s) 118, 136, 157, 181, 254, 255, 282, 741
BsmAI GTCTC 4 cut(s) 265, 408, 467, 618
BsmBI CGTCTC 2 cut(s) 408, 618
BsmFI GGGAC 2 cut(s) 305, 401
BsnI GGCC 4 cut(s) 5, 531, 733, 859
Bso31I GGTCTC 2 cut(s) 265, 467
BsoBI CYCGRG 6 cut(s) 99, 453, 781, 841, 869, 977
Bsp120I GGGCCC 1 cut(s) 731
Bsp1286I GDGCHC 5 cut(s) 356, 454, 504, 735, 782
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 1 cut(s) 218
BspANI GGCC 4 cut(s) 5, 531, 733, 859
BspCNI CTCAG 1 cut(s) 598
BspFNI CGCG 6 cut(s) 551, 680, 713, 761, 866, 917
BspLI GGNNCC 6 cut(s) 210, 293, 309, 389, 390, 733
BspPI GGATC 1 cut(s) 226
BspTNI GGTCTC 2 cut(s) 265, 467
BsrFI RCCGGY 3 cut(s) 235, 406, 524
BsrGI TGTACA 1 cut(s) 516
BssAI RCCGGY 3 cut(s) 235, 406, 524
BssECI CCNNGG 4 cut(s) 495, 782, 910, 978
BssHII GCGCGC 1 cut(s) 864
BssMI GATC 1 cut(s) 218
BssNI GRCGYC 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 911
BstACI GRCGYC 1 cut(s) 417
BstAUI TGTACA 1 cut(s) 516
BstBAI YACGTR 1 cut(s) 1015
BstC8I GCNNGC 5 cut(s) 116, 365, 526, 768, 866
BstDEI CTNAG 1 cut(s) 606
BstFNI CGCG 6 cut(s) 551, 680, 713, 761, 866, 917
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 5 cut(s) 202, 713, 866, 868, 917
BstKTI GATC 1 cut(s) 221
BstMAI GTCTC 4 cut(s) 265, 408, 467, 618
BstMBI GATC 1 cut(s) 218
BstMCI CGRYCG 2 cut(s) 482, 739
BstMWI GCNNNNNNNGC 6 cut(s) 57, 360, 508, 767, 865, 902
BstNI CCWGG 1 cut(s) 911
BstNSI RCATGY 2 cut(s) 469, 691
BstSLI GKGCMC 2 cut(s) 735, 782
BstUI CGCG 6 cut(s) 551, 680, 713, 761, 866, 917
BstV1I GCAGC 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 412
BsuI GTATCC 1 cut(s) 655
BsuRI GGCC 4 cut(s) 5, 531, 733, 859
BtgZI GCGATG 2 cut(s) 505, 566
BtrI CACGTC 1 cut(s) 577
BtsIMutI CAGTG 1 cut(s) 782
Cac8I GCNNGC 5 cut(s) 116, 365, 526, 768, 866
CfoI GCGC 5 cut(s) 202, 713, 866, 868, 917
Cfr10I RCCGGY 3 cut(s) 235, 406, 524
Cfr13I GGNCC 7 cut(s) 121, 292, 388, 731, 732, 857, 885
CseI GACGC 4 cut(s) 448, 767, 781, 906
Csp6I GTAC 5 cut(s) 316, 427, 517, 571, 676
CviAII CATG 2 cut(s) 466, 688
CviQI GTAC 5 cut(s) 316, 427, 517, 571, 676
DdeI CTNAG 1 cut(s) 606
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
EaeI YGGCCR 2 cut(s) 3, 529
Ecl136II GAGCTC 2 cut(s) 354, 502
Eco24I GRGCYC 4 cut(s) 356, 454, 504, 735
Eco31I GGTCTC 2 cut(s) 265, 467
Eco47I GGWCC 4 cut(s) 121, 292, 388, 885
Eco53kI GAGCTC 2 cut(s) 354, 502
Eco88I CYCGRG 6 cut(s) 99, 453, 781, 841, 869, 977
EcoICRI GAGCTC 2 cut(s) 354, 502
EcoO109I RGGNCCY 3 cut(s) 121, 388, 731
EcoRII CCWGG 1 cut(s) 909
EcoT38I GRGCYC 4 cut(s) 356, 454, 504, 735
Esp3I CGTCTC 2 cut(s) 408, 618
FaeI CATG 2 cut(s) 469, 691
FaiI YATR 4 cut(s) 467, 689, 723, 990
FaqI GGGAC 2 cut(s) 305, 401
FatI CATG 2 cut(s) 465, 687
FauI CCCGC 4 cut(s) 327, 374, 504, 665
Fnu4HI GCNGC 6 cut(s) 109, 112, 183, 443, 492, 529
FriOI GRGCYC 4 cut(s) 356, 454, 504, 735
Fsp4HI GCNGC 6 cut(s) 109, 112, 183, 443, 492, 529
FspBI CTAG 1 cut(s) 893
GlaI GCGC 5 cut(s) 201, 712, 865, 867, 916
GluI GCNGC 6 cut(s) 109, 112, 183, 443, 492, 529
GsuI CTGGAG 1 cut(s) 770
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 4 cut(s) 5, 531, 733, 859
HgaI GACGC 4 cut(s) 448, 767, 781, 906
HhaI GCGC 5 cut(s) 202, 713, 866, 868, 917
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 2 cut(s) 469, 691
Hin6I GCGC 5 cut(s) 200, 711, 864, 866, 915
HinP1I GCGC 5 cut(s) 200, 711, 864, 866, 915
HinfI GANTC 6 cut(s) 82, 90, 102, 161, 272, 613
HphI GGTGA 5 cut(s) 55, 77, 358, 385, 842
Hpy166II GTNNAC 4 cut(s) 427, 435, 517, 571
Hpy188I TCNGA 5 cut(s) 223, 312, 333, 358, 655
Hpy188III TCNNGA 3 cut(s) 99, 216, 436
Hpy8I GTNNAC 4 cut(s) 427, 435, 517, 571
Hpy99I CGWCG 7 cut(s) 442, 509, 539, 578, 685, 797, 922
HpyAV CCTTC 6 cut(s) 134, 151, 454, 629, 898, 935
HpyCH4IV ACGT 3 cut(s) 417, 576, 1014
HpyCH4V TGCA 3 cut(s) 73, 691, 1000
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 360, 508, 767, 865, 902
HpyF3I CTNAG 1 cut(s) 606
HpySE526I ACGT 3 cut(s) 417, 576, 1014
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 2 cut(s) 469, 691
HspAI GCGC 5 cut(s) 200, 711, 864, 866, 915
KflI GGGWCCC 1 cut(s) 388
KroI GCCGGC 1 cut(s) 524
KroNI GCCGGC 1 cut(s) 526
Kzo9I GATC 1 cut(s) 218
LmnI GCTCC 3 cut(s) 499, 594, 708
Lsp1109I GCAGC 1 cut(s) 454
MaeI CTAG 1 cut(s) 893
MaeII ACGT 3 cut(s) 417, 576, 1014
MaeIII GTNAC 3 cut(s) 9, 251, 346
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MboII GAAGA 2 cut(s) 412, 811
MhlI GDGCHC 5 cut(s) 356, 454, 504, 735, 782
MluCI AATT 7 cut(s) 140, 264, 286, 397, 929, 956, 1020
MluI ACGCGT 1 cut(s) 759
MlyI GAGTC 5 cut(s) 76, 99, 111, 266, 622
MmeI TCCRAC 1 cut(s) 633
MreI CGCCGGCG 1 cut(s) 524
MroNI GCCGGC 1 cut(s) 524
MroXI GAANNNNTTC 1 cut(s) 818
MseI TTAA 1 cut(s) 23
MspA1I CMGCKG 2 cut(s) 114, 445
MvaI CCWGG 1 cut(s) 911
MvnI CGCG 6 cut(s) 551, 680, 713, 761, 866, 917
MwoI GCNNNNNNNGC 6 cut(s) 57, 360, 508, 767, 865, 902
NaeI GCCGGC 1 cut(s) 526
NdeII GATC 1 cut(s) 218
NgoMIV GCCGGC 1 cut(s) 524
NlaIII CATG 2 cut(s) 469, 691
NlaIV GGNNCC 6 cut(s) 210, 293, 309, 389, 390, 733
NmeAIII GCCGAG 2 cut(s) 27, 31
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 2 cut(s) 469, 691
PauI GCGCGC 1 cut(s) 864
PcsI WCGNNNNNNNCGW 1 cut(s) 594
PdiI GCCGGC 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 818
PfeI GAWTC 1 cut(s) 161
PflFI GACNNNGTC 2 cut(s) 227, 478
PkrI GCNGC 6 cut(s) 110, 113, 184, 444, 493, 530
PleI GAGTC 5 cut(s) 76, 98, 110, 266, 621
PpsI GAGTC 5 cut(s) 76, 98, 110, 266, 621
Ppu21I YACGTR 1 cut(s) 1015
PpuMI RGGWCCY 2 cut(s) 121, 388
Psp124BI GAGCTC 2 cut(s) 356, 504
Psp5II RGGWCCY 2 cut(s) 121, 388
Psp6I CCWGG 1 cut(s) 909
PspGI CCWGG 1 cut(s) 909
PspN4I GGNNCC 6 cut(s) 210, 293, 309, 389, 390, 733
PspOMI GGGCCC 1 cut(s) 731
PspPI GGNCC 7 cut(s) 121, 292, 388, 731, 732, 857, 885
PspPPI RGGWCCY 2 cut(s) 121, 388
PsyI GACNNNGTC 2 cut(s) 227, 478
PteI GCGCGC 1 cut(s) 864
RsaI GTAC 5 cut(s) 317, 428, 518, 572, 677
RsaNI GTAC 5 cut(s) 316, 427, 517, 571, 676
SacI GAGCTC 2 cut(s) 356, 504
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 6 cut(s) 109, 112, 183, 443, 492, 529
Sau3AI GATC 1 cut(s) 218
Sau96I GGNCC 7 cut(s) 121, 292, 388, 731, 732, 857, 885
SchI GAGTC 5 cut(s) 76, 99, 111, 266, 622
SduI GDGCHC 5 cut(s) 356, 454, 504, 735, 782
SgrAI CRCCGGYG 1 cut(s) 524
SinI GGWCC 4 cut(s) 121, 292, 388, 885
Sse9I AATT 7 cut(s) 140, 264, 286, 397, 929, 956, 1020
SspMI CTAG 1 cut(s) 893
SstI GAGCTC 2 cut(s) 356, 504
TaiI ACGT 3 cut(s) 420, 579, 1017
TaqI TCGA 3 cut(s) 80, 504, 939
TasI AATT 7 cut(s) 140, 264, 286, 397, 929, 956, 1020
TatI WGTACW 1 cut(s) 516
TauI GCSGC 5 cut(s) 111, 114, 185, 494, 531
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 782
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 1 cut(s) 442
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 3 cut(s) 569, 738, 977
TspGWI ACGGA 3 cut(s) 201, 265, 698
TspRI CASTG 1 cut(s) 782
Tth111I GACNNNGTC 2 cut(s) 227, 478
VpaK11BI GGWCC 4 cut(s) 121, 292, 388, 885
XapI RAATTY 3 cut(s) 140, 929, 1020
XceI RCATGY 2 cut(s) 469, 691
XmnI GAANNNNTTC 1 cut(s) 818
XspI CTAG 1 cut(s) 893
ZraI GACGTC 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.