FvH4_6g21491

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
15067109 .. 15068867
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21491.t1

Sequence Viewer

Length: 1137 bp
ATGGAATCGACCGAGTTGATACCTGGTTTTCCCCAAGAAATCGCATACGAGTGCCTGACTCGGTTGCACTACTCGGCCCACCGAGTCGCCTCCCGAGTCTGCCGCCGATGGGGGGAGCTCATCAAAAGCAGAGACTTCTACAACCACAGAAAGCAATCCGGGCTTACCCACAAGGCCGCTTCTCTAATCCAAGCGCTTCCGGTTCGACCCGGATCAAAGCTGGCCGGGCCCGTCGTTTACGGATTGTCGGTTTTCGACCCGGAGAGGGGAGATTGGGCCCGGGTCGACCCGATTCCGAAGTACCCGGAGGGGCTGCCGCTGTTCTGTCAGGTGACGAGCTCGGAGGGGAAGCTGGTGGTGATGGGCGGGTGGGACCCGGCGAGTTACCAGCCGGTGAGGGACGTGTTCGTGTACGAGTTCACGACGCAGCGGTGGAGCAGAGGGAGGGACATGCCGGAGGTCCGGTCGTTCTTCGCCGCCGGGGAGTTCGACGGCCGGGTGTACGTCGCCGGAGGGCACGACGTGAACAAGAACGCGCTGAGGTCGGCGAGGGTTTATGACGTCAGAGCGAACGAGTGGAGCGAGTTGAGTGGGATGAGTGAGGAGCGAGACGAGTGCGAGGGGATCGTAAACGGGTCGGAGTTTTGGGTGGTGAGCGGGTACGGTACGGATATCCAGGGCGGGTTTGTGGGGAGCGCGGAGGTTTATGAGATCGGGTCGGGTCGGTGGAGGCTGGTCGAGGACGCGTGGAGGGCGAGTGAGTGTCCGAGGTCGTGCGTTGGGATTGGGATGGATGGGAAGTTGTTTTTTTGGGGGGAGAGGGATTCTGCTGTGAAGTCTGGGCCGTGCGGAGTGGAGTTGGGCCGGTGGGCCTTTGTGTCCGGGTCGGGTTACCAAGGTGGGCCGCATGAGTTCTTTTTGACTGAAAGGGAAAATGGCAAGTTGAAGAAGGTGGATGTGTGTGAGGAGTTCTCTGGGTTTGTTCAGTCTGGTTGCTTCGAAGAGCAAGATGTAAAAGCATTAAAGTTCTTTACATCGTGTGTAAAATATATGCAGTTCAACTGTTCAAGAGTTCCAGGCTGCTGGAAGTCTGAAACACAAGTTAAAACTCTGGCTTCGCCGACCGGTGATAGATAG

Protein Analysis

379

Amino Acids

42.28

Weight (kDa)

5.98

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 77 - 258 6.1e-13 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 82 - 206 7.9e-08 FBX42, beta-propeller domain
Kelch_FKB95 PF25210 97 - 247 9.5e-11 FKB95, Kelch-repeats domain
Beta-prop_Calicin PF13964 108 - 220 2.5e-09 Calicin, beta-propeller domain
Kelch_1 PF01344 109 - 152 1.2e-08 Kelch motif
Beta-prop_ATRN-LZTR1 PF24981 111 - 221 8.2e-06 Attractin/LZTR1 beta-propeller
Beta-prop_ATRN-LZTR1 PF24981 120 - 248 1.8e-06 Attractin/LZTR1 beta-propeller
Kelch_1 PF01344 155 - 200 7.3e-11 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 564
AccBSI CCGCTC 1 cut(s) 657
AccI GTMKAC 1 cut(s) 285
AccII CGCG 3 cut(s) 536, 698, 746
AclWI GGATC 2 cut(s) 220, 632
AcoI YGGCCR 2 cut(s) 222, 493
AcyI GRCGYC 1 cut(s) 561
AdeI CACNNNGTG 1 cut(s) 523
AfaI GTAC 5 cut(s) 302, 413, 503, 662, 667
AfeI AGCGCT 1 cut(s) 195
AfiI CCNNNNNNNGG 4 cut(s) 109, 112, 265, 266
AflIII ACRYGT 2 cut(s) 402, 744
AgeI ACCGGT 1 cut(s) 1124
AgsI TTSAA 3 cut(s) 946, 1060, 1068
AjiI CACGTC 2 cut(s) 403, 523
AjnI CCWGG 3 cut(s) 22, 675, 1075
AluBI AGCT 4 cut(s) 118, 220, 339, 352
AluI AGCT 4 cut(s) 118, 220, 339, 352
Alw21I GWGCWC 2 cut(s) 120, 341
Alw26I GTCTC 2 cut(s) 126, 603
AlwI GGATC 2 cut(s) 220, 632
Ama87I CYCGRG 2 cut(s) 93, 279
Aor51HI AGCGCT 1 cut(s) 195
ApaI GGGCCC 2 cut(s) 231, 280
ApeKI GCWGC 3 cut(s) 313, 427, 1080
AsiGI ACCGGT 1 cut(s) 1124
AspLEI GCGC 3 cut(s) 196, 538, 698
AsuHPI GGTGA 4 cut(s) 343, 370, 406, 664
AsuII TTCGAA 1 cut(s) 999
AvaI CYCGRG 2 cut(s) 93, 279
AvaII GGWCC 2 cut(s) 373, 460
BaeGI GKGCMC 3 cut(s) 231, 280, 519
BanII GRGCYC 4 cut(s) 120, 231, 280, 341
Bbv12I GWGCWC 2 cut(s) 120, 341
BbvCI CCTCAGC 1 cut(s) 539
BbvI GCAGC 3 cut(s) 300, 439, 1067
BccI CCATC 4 cut(s) 102, 355, 784, 788
BceAI ACGGC 2 cut(s) 508, 829
BcgI CGANNNNNNTGC 2 cut(s) 597, 631
BciT130I CCWGG 3 cut(s) 24, 677, 1077
BcoDI GTCTC 2 cut(s) 126, 603
BfoI RGCGCY 1 cut(s) 197
BisI GCNGC 8 cut(s) 103, 177, 314, 317, 428, 477, 905, 1081
BlsI GCNGC 8 cut(s) 104, 178, 315, 318, 429, 478, 906, 1082
Bme18I GGWCC 2 cut(s) 373, 460
BmeT110I CYCGRG 2 cut(s) 93, 279
BmgBI CACGTC 2 cut(s) 403, 523
BmiI GGNNCC 4 cut(s) 229, 278, 374, 375
BplI GAGNNNNNCTC 2 cut(s) 956, 988
Bpu10I CCTNAGC 1 cut(s) 539
Bpu14I TTCGAA 1 cut(s) 999
BsaHI GRCGYC 1 cut(s) 561
BsaJI CCNNGG 5 cut(s) 279, 480, 676, 767, 895
BsaWI WCCGGW 3 cut(s) 199, 462, 1124
BsaXI ACNNNNNCTCC 4 cut(s) 449, 479, 742, 772
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 112, 265, 266
Bse118I RCCGGY 3 cut(s) 391, 864, 1124
BseBI CCWGG 3 cut(s) 24, 677, 1077
BseDI CCNNGG 5 cut(s) 279, 480, 676, 767, 895
BseGI GGATG 4 cut(s) 600, 795, 799, 961
BseLI CCNNNNNNNGG 4 cut(s) 109, 112, 265, 266
BseMII CTCAG 1 cut(s) 530
BseRI GAGGAG 2 cut(s) 617, 980
BseSI GKGCMC 3 cut(s) 231, 280, 519
BseX3I CGGCCG 1 cut(s) 493
BseXI GCAGC 3 cut(s) 300, 439, 1067
Bsh1236I CGCG 3 cut(s) 536, 698, 746
Bsh1285I CGRYCG 4 cut(s) 12, 467, 496, 1125
BshTI ACCGGT 1 cut(s) 1124
BsiEI CGRYCG 4 cut(s) 12, 467, 496, 1125
BsiHKAI GWGCWC 2 cut(s) 120, 341
BsiHKCI CYCGRG 2 cut(s) 93, 279
BslFI GGGAC 3 cut(s) 386, 413, 461
BslI CCNNNNNNNGG 4 cut(s) 109, 112, 265, 266
BsmAI GTCTC 2 cut(s) 126, 603
BsmBI CGTCTC 1 cut(s) 603
BsmFI GGGAC 3 cut(s) 386, 413, 461
BsoBI CYCGRG 2 cut(s) 93, 279
Bsp119I TTCGAA 1 cut(s) 999
Bsp120I GGGCCC 2 cut(s) 227, 276
Bsp1286I GDGCHC 5 cut(s) 120, 231, 280, 341, 519
Bsp143I GATC 3 cut(s) 212, 624, 711
BspCNI CTCAG 1 cut(s) 531
BspFNI CGCG 3 cut(s) 536, 698, 746
BspLI GGNNCC 4 cut(s) 229, 278, 374, 375
BspPI GGATC 2 cut(s) 220, 632
BspQI GCTCTTC 1 cut(s) 996
BspT104I TTCGAA 1 cut(s) 999
BsrBI CCGCTC 1 cut(s) 657
BsrFI RCCGGY 3 cut(s) 391, 864, 1124
BssAI RCCGGY 3 cut(s) 391, 864, 1124
BssECI CCNNGG 5 cut(s) 279, 480, 676, 767, 895
BssMI GATC 3 cut(s) 212, 624, 711
BssNI GRCGYC 1 cut(s) 561
BssT1I CCWWGG 1 cut(s) 895
Bst2UI CCWGG 3 cut(s) 24, 677, 1077
Bst4CI ACNGT 2 cut(s) 665, 1064
Bst6I CTCTTC 1 cut(s) 996
BstACI GRCGYC 1 cut(s) 561
BstBI TTCGAA 1 cut(s) 999
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 539
BstEII GGTNACC 1 cut(s) 890
BstF5I GGATG 4 cut(s) 600, 795, 799, 961
BstFNI CGCG 3 cut(s) 536, 698, 746
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 3 cut(s) 196, 538, 698
BstKTI GATC 3 cut(s) 215, 627, 714
BstMAI GTCTC 2 cut(s) 126, 603
BstMBI GATC 3 cut(s) 212, 624, 711
BstMCI CGRYCG 4 cut(s) 12, 467, 496, 1125
BstMWI GCNNNNNNNGC 3 cut(s) 160, 226, 752
BstNI CCWGG 3 cut(s) 24, 677, 1077
BstNSI RCATGY 1 cut(s) 454
BstPI GGTNACC 1 cut(s) 890
BstSLI GKGCMC 3 cut(s) 231, 280, 519
BstUI CGCG 3 cut(s) 536, 698, 746
BstV1I GCAGC 3 cut(s) 300, 439, 1067
BstXI CCANNNNNNTGG 1 cut(s) 1083
BstZI CGGCCG 1 cut(s) 493
BtrI CACGTC 2 cut(s) 403, 523
BtsCI GGATG 4 cut(s) 600, 795, 799, 961
Cac8I GCNNGC 1 cut(s) 222
CfoI GCGC 3 cut(s) 196, 538, 698
Cfr10I RCCGGY 3 cut(s) 391, 864, 1124
Cfr9I CCCGGG 1 cut(s) 279
CseI GACGC 2 cut(s) 433, 752
CsiI ACCWGGT 1 cut(s) 22
Csp6I GTAC 5 cut(s) 301, 412, 502, 661, 666
CspAI ACCGGT 1 cut(s) 1124
CviAII CATG 2 cut(s) 451, 908
CviQI GTAC 5 cut(s) 301, 412, 502, 661, 666
DdeI CTNAG 1 cut(s) 539
DpnI GATC 3 cut(s) 214, 626, 713
DpnII GATC 3 cut(s) 212, 624, 711
DraIII CACNNNGTG 1 cut(s) 523
EaeI YGGCCR 2 cut(s) 222, 493
EagI CGGCCG 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 996
EarI CTCTTC 1 cut(s) 996
Ecl136II GAGCTC 2 cut(s) 118, 339
EclXI CGGCCG 1 cut(s) 493
Eco130I CCWWGG 1 cut(s) 895
Eco24I GRGCYC 4 cut(s) 120, 231, 280, 341
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 2 cut(s) 373, 460
Eco47III AGCGCT 1 cut(s) 195
Eco52I CGGCCG 1 cut(s) 493
Eco53kI GAGCTC 2 cut(s) 118, 339
Eco88I CYCGRG 2 cut(s) 93, 279
Eco91I GGTNACC 1 cut(s) 890
EcoICRI GAGCTC 2 cut(s) 118, 339
EcoO109I RGGNCCY 1 cut(s) 373
EcoO65I GGTNACC 1 cut(s) 890
EcoRII CCWGG 3 cut(s) 22, 675, 1075
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 1 cut(s) 895
EcoT38I GRGCYC 4 cut(s) 120, 231, 280, 341
ErhI CCWWGG 1 cut(s) 895
Esp3I CGTCTC 1 cut(s) 603
FaeI CATG 2 cut(s) 454, 911
FaiI YATR 7 cut(s) 46, 452, 558, 708, 909, 1050, 1052
FaqI GGGAC 3 cut(s) 386, 413, 461
FatI CATG 2 cut(s) 450, 907
FauI CCCGC 3 cut(s) 359, 650, 674
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 8 cut(s) 103, 177, 314, 317, 428, 477, 905, 1081
FokI GGATG 4 cut(s) 607, 802, 806, 968
FriOI GRGCYC 4 cut(s) 120, 231, 280, 341
Fsp4HI GCNGC 8 cut(s) 103, 177, 314, 317, 428, 477, 905, 1081
GlaI GCGC 3 cut(s) 195, 537, 697
GluI GCNGC 8 cut(s) 103, 177, 314, 317, 428, 477, 905, 1081
HaeII RGCGCY 1 cut(s) 197
HgaI GACGC 2 cut(s) 433, 752
HhaI GCGC 3 cut(s) 196, 538, 698
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 2 cut(s) 454, 911
Hin6I GCGC 3 cut(s) 194, 536, 696
HinP1I GCGC 3 cut(s) 194, 536, 696
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 6 cut(s) 5, 58, 84, 96, 292, 824
HphI GGTGA 4 cut(s) 343, 370, 406, 664
Hpy166II GTNNAC 7 cut(s) 238, 286, 412, 420, 502, 526, 631
Hpy188I TCNGA 6 cut(s) 297, 343, 566, 640, 768, 1093
Hpy188III TCNNGA 3 cut(s) 93, 421, 1068
Hpy8I GTNNAC 7 cut(s) 238, 286, 412, 420, 502, 526, 631
Hpy99I CGWCG 5 cut(s) 236, 427, 494, 509, 524
HpyAV CCTTC 1 cut(s) 943
HpyCH4III ACNGT 2 cut(s) 665, 1064
HpyCH4IV ACGT 4 cut(s) 402, 504, 522, 561
HpyCH4V TGCA 2 cut(s) 67, 1054
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 226, 752
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 4 cut(s) 402, 504, 522, 561
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 2 cut(s) 454, 911
HspAI GCGC 3 cut(s) 194, 536, 696
KflI GGGWCCC 1 cut(s) 373
Kzo9I GATC 3 cut(s) 212, 624, 711
LguI GCTCTTC 1 cut(s) 996
LmnI GCTCC 5 cut(s) 115, 435, 579, 604, 693
Lsp1109I GCAGC 3 cut(s) 300, 439, 1067
MabI ACCWGGT 1 cut(s) 22
MaeII ACGT 4 cut(s) 402, 504, 522, 561
MaeIII GTNAC 3 cut(s) 331, 383, 890
MalI GATC 3 cut(s) 214, 626, 713
MbiI CCGCTC 1 cut(s) 657
MboI GATC 3 cut(s) 212, 624, 711
MboII GAAGA 3 cut(s) 463, 958, 1013
MhlI GDGCHC 5 cut(s) 120, 231, 280, 341, 519
MluI ACGCGT 1 cut(s) 744
MlyI GAGTC 3 cut(s) 52, 93, 105
MmeI TCCRAC 1 cut(s) 618
MseI TTAA 2 cut(s) 1022, 1104
MslI CAYNNNNRTG 1 cut(s) 49
MspA1I CMGCKG 2 cut(s) 319, 430
MvaI CCWGG 3 cut(s) 24, 677, 1077
MvnI CGCG 3 cut(s) 536, 698, 746
MwoI GCNNNNNNNGC 3 cut(s) 160, 226, 752
NdeII GATC 3 cut(s) 212, 624, 711
NlaIII CATG 2 cut(s) 454, 911
NlaIV GGNNCC 4 cut(s) 229, 278, 374, 375
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 454
NspV TTCGAA 1 cut(s) 999
PciSI GCTCTTC 1 cut(s) 996
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PfeI GAWTC 3 cut(s) 5, 292, 824
PinAI ACCGGT 1 cut(s) 1124
PkrI GCNGC 8 cut(s) 104, 178, 315, 318, 429, 478, 906, 1082
PleI GAGTC 3 cut(s) 52, 92, 104
PpsI GAGTC 3 cut(s) 52, 92, 104
PpuMI RGGWCCY 1 cut(s) 373
Psp124BI GAGCTC 2 cut(s) 120, 341
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 3 cut(s) 22, 675, 1075
PspEI GGTNACC 1 cut(s) 890
PspGI CCWGG 3 cut(s) 22, 675, 1075
PspN4I GGNNCC 4 cut(s) 229, 278, 374, 375
PspOMI GGGCCC 2 cut(s) 227, 276
PspPPI RGGWCCY 1 cut(s) 373
RsaI GTAC 5 cut(s) 302, 413, 503, 662, 667
RsaNI GTAC 5 cut(s) 301, 412, 502, 661, 666
RseI CAYNNNNRTG 1 cut(s) 49
SacI GAGCTC 2 cut(s) 120, 341
SalI GTCGAC 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 996
SaqAI TTAA 2 cut(s) 1022, 1104
SatI GCNGC 8 cut(s) 103, 177, 314, 317, 428, 477, 905, 1081
Sau3AI GATC 3 cut(s) 212, 624, 711
SchI GAGTC 3 cut(s) 52, 93, 105
SduI GDGCHC 5 cut(s) 120, 231, 280, 341, 519
SexAI ACCWGGT 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 999
SinI GGWCC 2 cut(s) 373, 460
SmaI CCCGGG 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 49
SstI GAGCTC 2 cut(s) 120, 341
StyI CCWWGG 1 cut(s) 895
TaaI ACNGT 2 cut(s) 665, 1064
TaiI ACGT 4 cut(s) 405, 507, 525, 564
TaqI TCGA 7 cut(s) 8, 205, 255, 285, 489, 738, 999
TaqII GACCGA 1 cut(s) 26
TauI GCSGC 5 cut(s) 105, 179, 319, 479, 907
TfiI GAWTC 3 cut(s) 5, 292, 824
Tru1I TTAA 2 cut(s) 1022, 1104
Tru9I TTAA 2 cut(s) 1022, 1104
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 3 cut(s) 313, 427, 1080
Tsp45I GTSAC 1 cut(s) 331
TspGWI ACGGA 2 cut(s) 255, 683
TspMI CCCGGG 1 cut(s) 279
VpaK11BI GGWCC 2 cut(s) 373, 460
XceI RCATGY 1 cut(s) 454
XmaI CCCGGG 1 cut(s) 279
XmiI GTMKAC 1 cut(s) 285
ZraI GACGTC 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.