FvH4_4g11972

Pentatricopeptide repeat-containing protein At5g18390

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
15688573 .. 15695313
6741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11972.t1

Sequence Viewer

Length: 1335 bp
ATGCTCAGGTCCTTCCTCCACCAGAACCCCAAACCCATCCACCTCCTCCACCTCCTCCGCCACCTCACCACCACCACCAAAGACGACTACTTCTCCGCCATCCACCACATCACCAACATTGTCCGCCGCGACCACTTCATGGAGCGCACCCTCAACAAGCTCCGCATCCCTATCGACTCCGACCTCGTCTTCCGCGTCCTCCGCGCCTCCTCCTCCTCCCCCACCGAGTCCCTCCGCTTCTTCAACTGGGCCCGCACCCACCACCCCTCCTACCACCCCACCTCCCTCGAAACCGAAGAGCTCGTCAAGACTCTCGCCCGCTCCAAAAAATACGAGTCCATGTGGAAAATACTCGACTCCATGAAAACCCACCACGCCCTGACCCTCTCCGAGTCCACCCTCTGCTTCATCATCCAAGAATACGGCAAGCACGCCCTCATCGACCAGGCCGTCGAGCTCTTCAACCGAGCTCCCAACACCTTCAACTGCCTCCAGTCCGTCCAAGTCTACAACGCCCTGCTCTTCTCTCTCTGCGAAACCAAGCTCTTCCACGGCGCTTACGCCCTGGTGAGGCGGCTGATTAGAAAAGGAATGGTTCCGAATAAGATGACGTATTCAATTTTAGTCAATGCGTGGTGTTCGAATGGGAAGATGAAAGAAGCGCAGCTGTTCTTGGAGGAGATGAGTGAGAAGGGGTTTAATCCGCCGGTTCGAGGGCGTGATCTTCTGGTGGAGGGGCTGCTCAATGCAGGTTATATCGAGGGTGCCAAAGATATGGTTAGAAAAATGGTGAAGGAGAATTGTGTGCCTGAGGTTTCGACTTTTAATGCATTGTTGGAGGCGATTTGTAAGAGTGGGGAGGTTGAGTTCTGCATTGCTCTTTATTGGGAGGCTACTGGATTGGGGCTTTGTCCTGATATTAATACTTATAAAGTGATGATACCTGCTGTTTCGAAGATTGGGAGGATGGATGATGCGTTTAGGCTGTTGCATAATTCCATTGAGGACGGGCACAGGCCGTTTCCGAGCTTGTATGCCCCTATTGTTAAGGGGATGTGTAGGAAGGGTCAGTTTGATGATGCATTTTGTTTCTTTAGTGAGATGAAGGTCAAGGGGCATCCACCAAATCGGCCCGTGTACACCATGTTGATAACCATGGCCGGACGTGGAGGCCGGTTTGTTGAGGCTGCGAATTACTTGATAGAGATGACTGAGGTGGGGTTGGTGCCGATTTCCCGGTGCTTTGATTTTGTTACGGATGGATTGAAGAATTGTGGGAAGCATGATCTGGCTAAGAGGATTGAGCAAATAGAAGTTTCTCTTAGGGGTACATGA

Protein Analysis

445

Amino Acids

50.68

Weight (kDa)

8.88

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 166 - 213 4.3e-08 PPR repeat family
TPR_24 PF23276 192 - 296 1.6e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 196 - 229 2e-10 PPR repeat
PPR PF01535 204 - 233 7.1e-06 PPR repeat
PPR_2 PF13041 243 - 284 6.4e-06 PPR repeat family
PPR_2 PF13041 270 - 317 1.8e-06 PPR repeat family
PPR_2 PF13041 348 - 385 3e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 930
AasI GACNNNNNNGTC 1 cut(s) 449
Acc36I ACCTGC 2 cut(s) 740, 952
AccB1I GGYRCC 2 cut(s) 764, 1225
AccB7I CCANNNNNTGG 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 321
AccI GTMKAC 1 cut(s) 507
AccII CGCG 3 cut(s) 129, 195, 204
AcoI YGGCCR 1 cut(s) 1158
AfaI GTAC 2 cut(s) 1139, 1330
AfiI CCNNNNNNNGG 3 cut(s) 139, 570, 713
AgsI TTSAA 5 cut(s) 244, 463, 484, 618, 1267
AjiI CACGTC 1 cut(s) 1166
AjnI CCWGG 2 cut(s) 444, 564
AloI GAACNNNNNNTCC 2 cut(s) 851, 883
AluBI AGCT 7 cut(s) 160, 301, 457, 470, 544, 667, 1029
AluI AGCT 7 cut(s) 160, 301, 457, 470, 544, 667, 1029
Alw21I GWGCWC 3 cut(s) 303, 459, 472
AoxI GGCC 6 cut(s) 249, 447, 1016, 1130, 1158, 1171
ApaI GGGCCC 1 cut(s) 253
ApeKI GCWGC 3 cut(s) 664, 739, 1187
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
AseI ATTAAT 1 cut(s) 921
AspLEI GCGC 4 cut(s) 147, 206, 557, 664
AspS9I GGNCC 4 cut(s) 9, 249, 250, 1131
AsuC2I CCSGG 1 cut(s) 1237
AsuHPI GGTGA 4 cut(s) 58, 103, 580, 802
AsuII TTCGAA 2 cut(s) 641, 953
AvaII GGWCC 1 cut(s) 9
AxyI CCTNAGG 1 cut(s) 810
BaeGI GKGCMC 2 cut(s) 253, 1014
BanI GGYRCC 2 cut(s) 764, 1225
BanII GRGCYC 4 cut(s) 253, 303, 459, 472
BbsI GAAGAC 1 cut(s) 181
Bbv12I GWGCWC 3 cut(s) 303, 459, 472
BbvI GCAGC 3 cut(s) 676, 726, 1174
BccI CCATC 4 cut(s) 44, 107, 961, 1253
BceAI ACGGC 4 cut(s) 434, 439, 568, 1003
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 2 cut(s) 446, 566
BcnI CCSGG 1 cut(s) 1237
BfoI RGCGCY 1 cut(s) 558
BfuAI ACCTGC 2 cut(s) 740, 952
BisI GCNGC 5 cut(s) 127, 575, 665, 740, 1188
BlsI GCNGC 5 cut(s) 128, 576, 666, 741, 1189
Bme1390I CCNGG 3 cut(s) 446, 566, 1237
Bme18I GGWCC 1 cut(s) 9
BmgBI CACGTC 1 cut(s) 1166
BmgT120I GGNCC 4 cut(s) 9, 249, 250, 1131
BmiI GGNNCC 4 cut(s) 251, 597, 766, 1227
BmrFI CCNGG 3 cut(s) 446, 566, 1237
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 4 cut(s) 174, 964, 1069, 1126
BmuI ACTGGG 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 476
Bpu10I CCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 2 cut(s) 641, 953
BpuMI CCSGG 1 cut(s) 1237
BsaJI CCNNGG 3 cut(s) 550, 564, 1155
BsaXI ACNNNNNCTCC 8 cut(s) 77, 107, 251, 266, 281, 296, 851, 881
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 570, 713
Bse118I RCCGGY 2 cut(s) 706, 1173
Bse1I ACTGG 3 cut(s) 251, 493, 901
Bse21I CCTNAGG 1 cut(s) 810
Bse3DI GCAATG 1 cut(s) 873
BseBI CCWGG 2 cut(s) 446, 566
BseDI CCNNGG 3 cut(s) 550, 564, 1155
BseGI GGATG 9 cut(s) 36, 99, 165, 411, 972, 976, 1059, 1117, 1264
BseLI CCNNNNNNNGG 3 cut(s) 139, 570, 713
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 3 cut(s) 19, 801, 1203
BseNI ACTGG 3 cut(s) 251, 493, 901
BseRI GAGGAG 6 cut(s) 35, 44, 199, 202, 205, 692
BseSI GKGCMC 2 cut(s) 253, 1014
BseXI GCAGC 3 cut(s) 676, 726, 1174
Bsh1236I CGCG 3 cut(s) 129, 195, 204
BshFI GGCC 6 cut(s) 251, 449, 1018, 1132, 1160, 1173
BshNI GGYRCC 2 cut(s) 764, 1225
BsiHKAI GWGCWC 3 cut(s) 303, 459, 472
BsiSI CCGG 4 cut(s) 707, 1161, 1174, 1237
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 3 cut(s) 139, 570, 713
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 6 cut(s) 251, 449, 1018, 1132, 1160, 1173
Bsp119I TTCGAA 2 cut(s) 641, 953
Bsp120I GGGCCC 1 cut(s) 249
Bsp1286I GDGCHC 5 cut(s) 253, 303, 459, 472, 1014
Bsp1407I TGTACA 1 cut(s) 1137
Bsp143I GATC 2 cut(s) 721, 1285
Bsp19I CCATGG 1 cut(s) 1155
BspANI GGCC 6 cut(s) 251, 449, 1018, 1132, 1160, 1173
BspCNI CTCAG 3 cut(s) 18, 802, 1204
BspFNI CGCG 3 cut(s) 129, 195, 204
BspLI GGNNCC 4 cut(s) 251, 597, 766, 1227
BspMI ACCTGC 2 cut(s) 740, 952
BspQI GCTCTTC 4 cut(s) 291, 464, 527, 551
BspT104I TTCGAA 2 cut(s) 641, 953
BspT107I GGYRCC 2 cut(s) 764, 1225
BsrBI CCGCTC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 873
BsrFI RCCGGY 2 cut(s) 706, 1173
BsrGI TGTACA 1 cut(s) 1137
BsrI ACTGG 3 cut(s) 251, 493, 901
BssAI RCCGGY 2 cut(s) 706, 1173
BssECI CCNNGG 3 cut(s) 550, 564, 1155
BssMI GATC 2 cut(s) 721, 1285
BssT1I CCWWGG 1 cut(s) 1155
Bst2UI CCWGG 2 cut(s) 446, 566
Bst6I CTCTTC 4 cut(s) 291, 464, 527, 551
BstAUI TGTACA 1 cut(s) 1137
BstBI TTCGAA 2 cut(s) 641, 953
BstC8I GCNNGC 4 cut(s) 253, 319, 428, 432
BstDEI CTNAG 5 cut(s) 5, 810, 1212, 1293, 1322
BstDSI CCRYGG 2 cut(s) 550, 1155
BstF5I GGATG 9 cut(s) 36, 99, 165, 411, 972, 976, 1059, 1117, 1264
BstFNI CGCG 3 cut(s) 129, 195, 204
BstH2I RGCGCY 1 cut(s) 558
BstHHI GCGC 4 cut(s) 147, 206, 557, 664
BstKTI GATC 2 cut(s) 724, 1288
BstMBI GATC 2 cut(s) 721, 1285
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstNI CCWGG 2 cut(s) 446, 566
BstSCI CCNGG 3 cut(s) 444, 564, 1235
BstSLI GKGCMC 2 cut(s) 253, 1014
BstUI CGCG 3 cut(s) 129, 195, 204
BstV1I GCAGC 3 cut(s) 676, 726, 1174
BstV2I GAAGAC 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 775
Bsu36I CCTNAGG 1 cut(s) 810
BsuRI GGCC 6 cut(s) 251, 449, 1018, 1132, 1160, 1173
BtgI CCRYGG 2 cut(s) 550, 1155
BtrI CACGTC 1 cut(s) 1166
BtsCI GGATG 9 cut(s) 36, 99, 165, 411, 972, 976, 1059, 1117, 1264
BveI ACCTGC 2 cut(s) 740, 952
Cac8I GCNNGC 4 cut(s) 253, 319, 428, 432
CfoI GCGC 4 cut(s) 147, 206, 557, 664
Cfr10I RCCGGY 2 cut(s) 706, 1173
Cfr13I GGNCC 4 cut(s) 9, 249, 250, 1131
CseI GACGC 1 cut(s) 184
Csp6I GTAC 2 cut(s) 1138, 1329
CviAII CATG 7 cut(s) 139, 340, 361, 1144, 1156, 1283, 1332
CviQI GTAC 2 cut(s) 1138, 1329
DdeI CTNAG 5 cut(s) 5, 810, 1212, 1293, 1322
DpnI GATC 2 cut(s) 723, 1287
DpnII GATC 2 cut(s) 721, 1285
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
EaeI YGGCCR 1 cut(s) 1158
Eam1104I CTCTTC 4 cut(s) 291, 464, 527, 551
EarI CTCTTC 4 cut(s) 291, 464, 527, 551
EciI GGCGGA 4 cut(s) 47, 85, 113, 693
Ecl136II GAGCTC 3 cut(s) 301, 457, 470
Eco130I CCWWGG 1 cut(s) 1155
Eco24I GRGCYC 4 cut(s) 253, 303, 459, 472
Eco47I GGWCC 1 cut(s) 9
Eco53kI GAGCTC 3 cut(s) 301, 457, 470
Eco81I CCTNAGG 1 cut(s) 810
EcoICRI GAGCTC 3 cut(s) 301, 457, 470
EcoO109I RGGNCCY 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 444, 564
EcoT14I CCWWGG 1 cut(s) 1155
EcoT22I ATGCAT 2 cut(s) 832, 1084
EcoT38I GRGCYC 4 cut(s) 253, 303, 459, 472
ErhI CCWWGG 1 cut(s) 1155
FaeI CATG 7 cut(s) 142, 343, 364, 1147, 1159, 1286, 1335
FalI AAGNNNNNCTT 1 cut(s) 1305
FaqI GGGAC 1 cut(s) 214
FatI CATG 7 cut(s) 138, 339, 360, 1143, 1155, 1282, 1331
FauI CCCGC 2 cut(s) 260, 326
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 5 cut(s) 127, 575, 665, 740, 1188
FokI GGATG 9 cut(s) 23, 86, 152, 398, 979, 983, 1066, 1104, 1271
FriOI GRGCYC 4 cut(s) 253, 303, 459, 472
Fsp4HI GCNGC 5 cut(s) 127, 575, 665, 740, 1188
GlaI GCGC 4 cut(s) 146, 205, 556, 663
GluI GCNGC 5 cut(s) 127, 575, 665, 740, 1188
GsuI CTGGAG 1 cut(s) 476
HaeII RGCGCY 1 cut(s) 558
HaeIII GGCC 6 cut(s) 251, 449, 1018, 1132, 1160, 1173
HapII CCGG 4 cut(s) 707, 1161, 1174, 1237
HgaI GACGC 1 cut(s) 184
HhaI GCGC 4 cut(s) 147, 206, 557, 664
Hin1II CATG 7 cut(s) 142, 343, 364, 1147, 1159, 1286, 1335
Hin6I GCGC 4 cut(s) 145, 204, 555, 662
HinP1I GCGC 4 cut(s) 145, 204, 555, 662
HinfI GANTC 6 cut(s) 176, 227, 310, 335, 356, 392
HpaII CCGG 4 cut(s) 707, 1161, 1174, 1237
HphI GGTGA 4 cut(s) 58, 103, 580, 802
Hpy166II GTNNAC 4 cut(s) 396, 508, 1138, 1140
Hpy188I TCNGA 4 cut(s) 181, 391, 600, 1026
Hpy188III TCNNGA 2 cut(s) 307, 914
Hpy8I GTNNAC 4 cut(s) 396, 508, 1138, 1140
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 6 cut(s) 22, 490, 685, 787, 1057, 1099
HpyCH4IV ACGT 2 cut(s) 611, 1165
HpyCH4V TGCA 5 cut(s) 749, 830, 873, 991, 1082
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 5 cut(s) 5, 810, 1212, 1293, 1322
HpySE526I ACGT 2 cut(s) 611, 1165
Hsp92II CATG 7 cut(s) 142, 343, 364, 1147, 1159, 1286, 1335
HspAI GCGC 4 cut(s) 145, 204, 555, 662
Kzo9I GATC 2 cut(s) 721, 1285
LguI GCTCTTC 4 cut(s) 291, 464, 527, 551
LmnI GCTCC 4 cut(s) 142, 165, 326, 475
Lsp1109I GCAGC 3 cut(s) 676, 726, 1174
LweI GCATC 4 cut(s) 174, 964, 1069, 1126
MaeII ACGT 2 cut(s) 611, 1165
MaeIII GTNAC 1 cut(s) 1252
MalI GATC 2 cut(s) 723, 1287
MbiI CCGCTC 1 cut(s) 321
MboI GATC 2 cut(s) 721, 1285
MhlI GDGCHC 5 cut(s) 253, 303, 459, 472, 1014
MluCI AATT 5 cut(s) 618, 799, 994, 1192, 1270
MlyI GAGTC 6 cut(s) 170, 236, 304, 344, 350, 401
MmeI TCCRAC 2 cut(s) 204, 816
Mph1103I ATGCAT 2 cut(s) 832, 1084
MseI TTAA 4 cut(s) 699, 825, 921, 1047
MspA1I CMGCKG 1 cut(s) 667
MspI CCGG 4 cut(s) 707, 1161, 1174, 1237
MspR9I CCNGG 3 cut(s) 446, 566, 1237
MvaI CCWGG 2 cut(s) 446, 566
MvnI CGCG 3 cut(s) 129, 195, 204
MwoI GCNNNNNNNGC 1 cut(s) 201
NciI CCSGG 1 cut(s) 1237
NcoI CCATGG 1 cut(s) 1155
NdeII GATC 2 cut(s) 721, 1285
NlaIII CATG 7 cut(s) 142, 343, 364, 1147, 1159, 1286, 1335
NlaIV GGNNCC 4 cut(s) 251, 597, 766, 1227
NsiI ATGCAT 2 cut(s) 832, 1084
NspV TTCGAA 2 cut(s) 641, 953
PciSI GCTCTTC 4 cut(s) 291, 464, 527, 551
PcsI WCGNNNNNNNCGW 3 cut(s) 192, 438, 447
PflFI GACNNNGTC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 5 cut(s) 128, 576, 666, 741, 1189
PleI GAGTC 6 cut(s) 170, 235, 304, 343, 350, 400
PpsI GAGTC 6 cut(s) 170, 235, 304, 343, 350, 400
PpuMI RGGWCCY 1 cut(s) 9
PshBI ATTAAT 1 cut(s) 921
PsiI TTATAA 1 cut(s) 930
Psp124BI GAGCTC 3 cut(s) 303, 459, 472
Psp5II RGGWCCY 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 444, 564
PspGI CCWGG 2 cut(s) 444, 564
PspN4I GGNNCC 4 cut(s) 251, 597, 766, 1227
PspOMI GGGCCC 1 cut(s) 249
PspPI GGNCC 4 cut(s) 9, 249, 250, 1131
PspPPI RGGWCCY 1 cut(s) 9
PsyI GACNNNGTC 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 667
RsaI GTAC 2 cut(s) 1139, 1330
RsaNI GTAC 2 cut(s) 1138, 1329
SacI GAGCTC 3 cut(s) 303, 459, 472
SapI GCTCTTC 4 cut(s) 291, 464, 527, 551
SaqAI TTAA 4 cut(s) 699, 825, 921, 1047
SatI GCNGC 5 cut(s) 127, 575, 665, 740, 1188
Sau3AI GATC 2 cut(s) 721, 1285
Sau96I GGNCC 4 cut(s) 9, 249, 250, 1131
SchI GAGTC 6 cut(s) 170, 236, 304, 344, 350, 401
ScrFI CCNGG 3 cut(s) 446, 566, 1237
SduI GDGCHC 5 cut(s) 253, 303, 459, 472, 1014
SfaNI GCATC 4 cut(s) 174, 964, 1069, 1126
SfuI TTCGAA 2 cut(s) 641, 953
SinI GGWCC 1 cut(s) 9
Sse9I AATT 5 cut(s) 618, 799, 994, 1192, 1270
SstI GAGCTC 3 cut(s) 303, 459, 472
StyD4I CCNGG 3 cut(s) 444, 564, 1235
StyI CCWWGG 1 cut(s) 1155
TaiI ACGT 2 cut(s) 614, 1168
TasI AATT 5 cut(s) 618, 799, 994, 1192, 1270
TatI WGTACW 1 cut(s) 1137
TauI GCSGC 2 cut(s) 129, 577
Tru1I TTAA 4 cut(s) 699, 825, 921, 1047
Tru9I TTAA 4 cut(s) 699, 825, 921, 1047
TseI GCWGC 3 cut(s) 664, 739, 1187
TspDTI ATGAA 5 cut(s) 127, 377, 397, 668, 1118
TspGWI ACGGA 2 cut(s) 487, 1271
Tth111I GACNNNGTC 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 9
VspI ATTAAT 1 cut(s) 921
XmiI GTMKAC 1 cut(s) 507
Zsp2I ATGCAT 2 cut(s) 832, 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.