Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005891

Physical Location & Seq

Genomic Coordinates Forward (+)

26932199 .. 26933603

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGATGATGCATTTAGGCTTTTGCATAATGCGATTGAGGACGGGCACAGGCCATTTCCGGGCTTGTATGCCCCCATTGTTAAGGGGATGTGTAGGAATGGTCAGTTTGATGATGCATTTTATTTCTTTAGTGAGATGAAGGTCAAGGGTCATCCTCCAAATCGGCCGGTATATACCACGTTGATAACTATGGCTGGACGTGGAGGCCAGTTTGTTGAGGCTGCGAATTACTTGATGGAGATGACTGAGTTGGGGTTGATGCCGATTTCGCGGTGCTTTGATTTGGTTACGGATGGATTGAAGAATAGTGGGAAGCATGATCTGGCTAAGAGAATTGAGAAATTGGAAGTTTCTCTTAGGGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

122

Amino Acids

13.73

Weight (kDa)

6.9

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	23 - 47	1.6e-06	PPR repeat
PPR_2	PF13041	26 - 63	5.5e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18390
fragaria_vesca	FvH4_4g11972
malus_domestica	MD04G1235400.v1.1
prunus_persica	Prupe.6G355300_v2.0.a1
pyrus_communis	pycom04g20890
rosa_chinensis	RchiOBHm_Chr7g0230951
rosa_laevigata	RLG00000001439 RLG00000002174 RLG00000002176
rosa_multiflora	Rmu_sc0000453.1_g000016 Rmu_sc0000453.1_g000017 Rmu_sc0002014.1_g000047
rosa_roxburghii	Rroxscaffold_3G00229640 Rroxscaffold_3G00238690 Rroxscaffold_3G00238710 Rroxscaffold_3G00238720 Rroxscaffold_3G00238730
rosa_rugosa	Rorug07G0263500
rosa_samantha	Rh7AG416900 Rh7AG417000 Rh7BG392800 Rh7BG392900 Rh7CG436000 Rh7CG436100 Rh7DG411100 Rh7DG411200
rosa_wichuraiana	Rw1G007620 Rw7G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	271
AciI	CCGC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	164
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	301
AjiI	CACGTC	1 cut(s)	200
AoxI	GGCC	3 cut(s)	50, 164, 205
ApeKI	GCWGC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	2 cut(s)	229, 287
BcnI	CCSGG	1 cut(s)	60
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	60
BmgBI	CACGTC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	103, 249
BpuMI	CCSGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	208
BseGI	GGATG	4 cut(s)	10, 93, 151, 298
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	48
BseX3I	CGGCCG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	271
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	3 cut(s)	52, 166, 207
BsiEI	CGRYCG	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	59, 167
BslI	CCNNNNNNNGG	1 cut(s)	59
BsnI	GGCC	3 cut(s)	52, 166, 207
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	3 cut(s)	52, 166, 207
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	166
BssMI	GATC	1 cut(s)	319
BstDEI	CTNAG	3 cut(s)	246, 327, 356
BstF5I	GGATG	4 cut(s)	10, 93, 151, 298
BstFNI	CGCG	1 cut(s)	271
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	48
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	208
BstZI	CGGCCG	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	52, 166, 207
BtrI	CACGTC	1 cut(s)	200
BtsCI	GGATG	4 cut(s)	10, 93, 151, 298
Cfr10I	RCCGGY	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	363
CviAII	CATG	2 cut(s)	317, 366
CviJI	RGCY	8 cut(s)	19, 52, 63, 166, 194, 207, 221, 326
CviKI_1	RGCY	8 cut(s)	19, 52, 63, 166, 194, 207, 221, 326
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	3 cut(s)	246, 327, 356
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	164
EagI	CGGCCG	1 cut(s)	164
EclXI	CGGCCG	1 cut(s)	164
Eco52I	CGGCCG	1 cut(s)	164
EcoT22I	ATGCAT	2 cut(s)	13, 118
FaeI	CATG	2 cut(s)	320, 369
FaiI	YATR	7 cut(s)	27, 69, 172, 174, 191, 318, 367
FalI	AAGNNNNNCTT	1 cut(s)	339
FatI	CATG	2 cut(s)	316, 365
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	4 cut(s)	17, 100, 138, 305
Fsp4HI	GCNGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	3 cut(s)	52, 166, 207
HapII	CCGG	2 cut(s)	59, 167
Hin1II	CATG	2 cut(s)	320, 369
HpaII	CCGG	2 cut(s)	59, 167
HpyAV	CCTTC	1 cut(s)	133
HpyCH4IV	ACGT	2 cut(s)	179, 199
HpyCH4V	TGCA	3 cut(s)	11, 25, 116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	3 cut(s)	246, 327, 356
HpySE526I	ACGT	2 cut(s)	179, 199
Hsp92II	CATG	2 cut(s)	320, 369
Kzo9I	GATC	1 cut(s)	319
LpnPI	CCDG	6 cut(s)	34, 72, 180, 180, 221, 308
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	2 cut(s)	103, 249
MaeII	ACGT	2 cut(s)	179, 199
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	3 cut(s)	226, 333, 341
MnlI	CCTC	4 cut(s)	31, 165, 197, 211
Mph1103I	ATGCAT	2 cut(s)	13, 118
MseI	TTAA	1 cut(s)	81
MspI	CCGG	2 cut(s)	59, 167
MspR9I	CCNGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	1 cut(s)	268
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	2 cut(s)	320, 369
NsiI	ATGCAT	2 cut(s)	13, 118
PkrI	GCNGC	1 cut(s)	223
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	3 cut(s)	144, 182, 202
SfaNI	GCATC	2 cut(s)	103, 249
Sse9I	AATT	3 cut(s)	226, 333, 341
SsiI	CCGC	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	58
TaiI	ACGT	2 cut(s)	182, 202
TasI	AATT	3 cut(s)	226, 333, 341
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	1 cut(s)	305
Zsp2I	ATGCAT	2 cut(s)	13, 118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.