Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005891

Physical Location & Seq

Genomic Coordinates Reverse (-)

31441262 .. 31442635

Gene Structure 1374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1235400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGTTGGGCGCCGCCAAAAACTCACCGGTCCTCCACAGACCGCAACCACTCCGCCGCCTCCTCCGCCACTTCACCACCGCCCTCAATGCCGCCCCTCCAAACGGCGTCGTCCCGACAAAAGATAACTACTTCTCAGCCATCCATCACATCTCCAACATCGTCCGTCGCGACCACTACCTGGAGCGGACACTCAACAAGCTCCGAATCGCCGTCGACTCGGACCTCGTCTACCGCGTCCTCCGCGCCTGCTCCGCCCACGGCACCGAGTCGCTCCGATTCTTCAACTGGGCCCGGACCCACCACCCCACCTACCACCCCACGACCCTAGAGCTCGAAGAACTCGCCAAGATCCTCGCTCGCGCCAAAAAGTACGAATCGATGTGGAAGCTTATCGAATCGATGCAGACCCACCACGGATTAACCATCTCGGAAGAAACCCTCTGCTTCGTAATCGAAGAGTACGGCCGCCACGGCCTGGTGGATCAGGCGGTGGAGCTTTTCAATCGGGCGCCGAAGACCTTCCGGTGCTCCCAAACCGCCGGAGTTTACAACGCTCTGCTGTTCGCGCTCTGCGAAGGGAAGCTCTTTCATGGGGCTTATGCTCTGGTGAGGAGGATGATCCGAAAAGGGGTTGTTCCGGATAAGAAGACGTATTCCATTTTGGTGAATGCTTGGTGCTCCAATGGGAAAATGCGGGAGGCCCAATTGTTCTTGGAGGAGATGAGCAGCAAAGGGTTCAATCCGCCGGTTCGCGGCCGCGATCTTCTCGTCGAAGGGCTGCTCAATGCTGGCTACGTCGAGGCTGCAAAAGGGATGGTAAGGAAGATGGTGAAGGAAGGATTTGTGCCTGATGTTTCTACTTTCAATGCATTGATGGAGGCTATCTGTAAATGTGGGGAGGTTGATTTTTGCATTGATTTGTATTGGGAAGCAAATGGTTTGGGGCTCTGTCCTGATATCAACACTTACAAGGTGTTGATTCCGGCGGTCTCGAAGGTGGGGAGGATCGATGATGCTTTTCGGCTTCTGCATAACTCGATCGAAGAGGGGCATAAGCCGTTTCCGAGCTTGTATGCTTCTATAATTAAGGGAATGTGCAGGAGGGGGCAGTTTGATGATGCATTTTGTTTCTTTAGTGAGATGAAGGTTAAGGGGCATCCTCCCAACAGGCCGGTGTATACCATGTTGATAACCATGGCTGGACGCGGAGGGCGGTTTGTTGACGCTGCGAATTACTTGGTGGAAATGACTGAGATGGGGTTGATGCCGATTTCGCGGTGCTTTGATTTCGTTACTGATGGATTGAAGAACTGTGGGAAGCATGATATGGCTAAGAGGATTGAACAATTGGAAGTTTCTCTCCGCGGCGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

458

Amino Acids

51.62

Weight (kDa)

9.04

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	182 - 226	8.8e-10	PPR repeat family
TPR_24	PF23276	205 - 309	1.5e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	209 - 242	1.7e-09	PPR repeat
PPR_2	PF13041	256 - 297	7.4e-07	PPR repeat family
PPR_2	PF13041	283 - 330	1.3e-07	PPR repeat family
PPR_1	PF12854	357 - 382	5.6e-06	PPR repeat
PPR_2	PF13041	358 - 398	1.5e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18390
fragaria_vesca	FvH4_4g11972
malus_domestica	MD04G1235400.v1.1
prunus_persica	Prupe.6G355300_v2.0.a1
pyrus_communis	pycom04g20890
rosa_chinensis	RchiOBHm_Chr7g0230951
rosa_laevigata	RLG00000001439 RLG00000002174 RLG00000002176
rosa_multiflora	Rmu_sc0000453.1_g000016 Rmu_sc0000453.1_g000017 Rmu_sc0002014.1_g000047
rosa_roxburghii	Rroxscaffold_3G00229640 Rroxscaffold_3G00238690 Rroxscaffold_3G00238710 Rroxscaffold_3G00238720 Rroxscaffold_3G00238730
rosa_rugosa	Rorug07G0263500
rosa_samantha	Rh7AG416900 Rh7AG417000 Rh7BG392800 Rh7BG392900 Rh7CG436000 Rh7CG436100 Rh7DG411100 Rh7DG411200
rosa_wichuraiana	Rw1G007620 Rw7G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	8, 260, 508
AccB7I	CCANNNNNTGG	2 cut(s)	178, 475
AccBSI	CCGCTC	1 cut(s)	184
AccI	GTMKAC	3 cut(s)	213, 228, 1178
AccIII	TCCGGA	1 cut(s)	637
AclWI	GGATC	4 cut(s)	343, 489, 613, 1013
AcoI	YGGCCR	2 cut(s)	463, 754
AcyI	GRCGYC	3 cut(s)	9, 105, 509
AfaI	GTAC	2 cut(s)	371, 461
AfiI	CCNNNNNNNGG	5 cut(s)	101, 178, 475, 628, 752
AgeI	ACCGGT	1 cut(s)	25
AgsI	TTSAA	6 cut(s)	283, 502, 739, 865, 1306, 1343
AjnI	CCWGG	2 cut(s)	177, 474
AluBI	AGCT	6 cut(s)	199, 331, 388, 496, 583, 1068
AluI	AGCT	6 cut(s)	199, 331, 388, 496, 583, 1068
Alw21I	GWGCWC	3 cut(s)	333, 530, 680
Alw26I	GTCTC	1 cut(s)	994
AlwI	GGATC	4 cut(s)	343, 489, 613, 1013
Aor13HI	TCCGGA	1 cut(s)	637
AoxI	GGCC	6 cut(s)	288, 463, 472, 699, 754, 1169
ApaI	GGGCCC	1 cut(s)	292
ApeKI	GCWGC	4 cut(s)	726, 778, 803, 1226
AsiGI	ACCGGT	1 cut(s)	25
Asp700I	GAANNNNTTC	1 cut(s)	518
AspLEI	GCGC	6 cut(s)	11, 245, 362, 511, 568, 1370
AspS9I	GGNCC	6 cut(s)	28, 220, 288, 289, 294, 700
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	5 cut(s)	15, 64, 619, 676, 841
AvaII	GGWCC	3 cut(s)	28, 220, 294
BaeGI	GKGCMC	1 cut(s)	292
BanI	GGYRCC	3 cut(s)	8, 260, 508
BanII	GRGCYC	3 cut(s)	292, 333, 948
BbsI	GAAGAC	2 cut(s)	521, 653
Bbv12I	GWGCWC	3 cut(s)	333, 530, 680
BbvI	GCAGC	4 cut(s)	738, 765, 790, 1213
BccI	CCATC	8 cut(s)	146, 150, 431, 808, 820, 868, 1249, 1292
BceAI	ACGGC	6 cut(s)	118, 194, 274, 478, 487, 1042
BciT130I	CCWGG	2 cut(s)	179, 476
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	994
BfaI	CTAG	1 cut(s)	326
BfoI	RGCGCY	2 cut(s)	12, 512
BglI	GCCNNNNNGGC	1 cut(s)	471
Bme1390I	CCNGG	3 cut(s)	179, 292, 476
Bme18I	GGWCC	3 cut(s)	28, 220, 294
BmgT120I	GGNCC	6 cut(s)	28, 220, 288, 289, 294, 700
BmiI	GGNNCC	5 cut(s)	10, 262, 290, 296, 510
BmrFI	CCNGG	3 cut(s)	179, 292, 476
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	5 cut(s)	390, 1003, 1108, 1165, 1254
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	2 cut(s)	521, 653
BpmI	CTGGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	292
Bsa29I	ATCGAT	3 cut(s)	377, 398, 1008
BsaHI	GRCGYC	3 cut(s)	9, 105, 509
BsaI	GGTCTC	1 cut(s)	994
BsaJI	CCNNGG	5 cut(s)	256, 412, 469, 1194, 1363
BsaWI	WCCGGW	3 cut(s)	25, 522, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 178, 475, 628, 752
Bse118I	RCCGGY	3 cut(s)	25, 745, 1171
Bse1I	ACTGG	1 cut(s)	290
BseAI	TCCGGA	1 cut(s)	637
BseBI	CCWGG	2 cut(s)	179, 476
BseCI	ATCGAT	3 cut(s)	377, 398, 1008
BseDI	CCNNGG	5 cut(s)	256, 412, 469, 1194, 1363
BseGI	GGATG	4 cut(s)	138, 621, 819, 1156
BseLI	CCNNNNNNNGG	5 cut(s)	101, 178, 475, 628, 752
BseMII	CTCAG	2 cut(s)	147, 1242
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	3 cut(s)	50, 625, 731
BseSI	GKGCMC	1 cut(s)	292
BseX3I	CGGCCG	2 cut(s)	463, 754
BseXI	GCAGC	4 cut(s)	738, 765, 790, 1213
BsgI	GTGCAG	1 cut(s)	1117
Bsh1285I	CGRYCG	3 cut(s)	466, 757, 1041
BshFI	GGCC	6 cut(s)	290, 465, 474, 701, 756, 1171
BshNI	GGYRCC	3 cut(s)	8, 260, 508
BshTI	ACCGGT	1 cut(s)	25
BshVI	ATCGAT	3 cut(s)	377, 398, 1008
BsiEI	CGRYCG	3 cut(s)	466, 757, 1041
BsiHKAI	GWGCWC	3 cut(s)	333, 530, 680
BsiSI	CCGG	8 cut(s)	26, 292, 523, 540, 638, 746, 983, 1172
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	5 cut(s)	101, 178, 475, 628, 752
BsmAI	GTCTC	1 cut(s)	994
BsmFI	GGGAC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	6 cut(s)	290, 465, 474, 701, 756, 1171
Bso31I	GGTCTC	1 cut(s)	994
Bsp120I	GGGCCC	1 cut(s)	288
Bsp1286I	GDGCHC	5 cut(s)	292, 333, 530, 680, 948
Bsp13I	TCCGGA	1 cut(s)	637
Bsp143I	GATC	6 cut(s)	348, 481, 618, 760, 1005, 1038
Bsp19I	CCATGG	1 cut(s)	1194
Bsp68I	TCGCGA	1 cut(s)	168
BspANI	GGCC	6 cut(s)	290, 465, 474, 701, 756, 1171
BspCNI	CTCAG	2 cut(s)	146, 1243
BspDI	ATCGAT	3 cut(s)	377, 398, 1008
BspEI	TCCGGA	1 cut(s)	637
BspLI	GGNNCC	5 cut(s)	10, 262, 290, 296, 510
BspPI	GGATC	4 cut(s)	343, 489, 613, 1013
BspT107I	GGYRCC	3 cut(s)	8, 260, 508
BspTNI	GGTCTC	1 cut(s)	994
BsrBI	CCGCTC	1 cut(s)	184
BsrFI	RCCGGY	3 cut(s)	25, 745, 1171
BsrI	ACTGG	1 cut(s)	290
BssAI	RCCGGY	3 cut(s)	25, 745, 1171
BssECI	CCNNGG	5 cut(s)	256, 412, 469, 1194, 1363
BssMI	GATC	6 cut(s)	348, 481, 618, 760, 1005, 1038
BssNAI	GTATAC	1 cut(s)	1179
BssNI	GRCGYC	3 cut(s)	9, 105, 509
BssT1I	CCWWGG	1 cut(s)	1194
Bst1107I	GTATAC	1 cut(s)	1179
Bst2UI	CCWGG	2 cut(s)	179, 476
Bst4CI	ACNGT	1 cut(s)	1313
Bst6I	CTCTTC	2 cut(s)	450, 1038
BstACI	GRCGYC	3 cut(s)	9, 105, 509
BstC8I	GCNNGC	3 cut(s)	247, 358, 790
BstDEI	CTNAG	3 cut(s)	133, 1251, 1332
BstDSI	CCRYGG	5 cut(s)	256, 412, 469, 1194, 1363
BstF5I	GGATG	4 cut(s)	138, 621, 819, 1156
BstH2I	RGCGCY	2 cut(s)	12, 512
BstHHI	GCGC	6 cut(s)	11, 245, 362, 511, 568, 1370
BstKTI	GATC	6 cut(s)	351, 484, 621, 763, 1008, 1041
BstMAI	GTCTC	1 cut(s)	994
BstMBI	GATC	6 cut(s)	348, 481, 618, 760, 1005, 1038
BstMCI	CGRYCG	3 cut(s)	466, 757, 1041
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 86, 240, 251, 471, 565, 1273
BstNI	CCWGG	2 cut(s)	179, 476
BstSCI	CCNGG	3 cut(s)	177, 290, 474
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	4 cut(s)	738, 765, 790, 1213
BstV2I	GAAGAC	2 cut(s)	521, 653
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BstZ17I	GTATAC	1 cut(s)	1179
BstZI	CGGCCG	2 cut(s)	463, 754
Bsu15I	ATCGAT	3 cut(s)	377, 398, 1008
BsuRI	GGCC	6 cut(s)	290, 465, 474, 701, 756, 1171
BsuTUI	ATCGAT	3 cut(s)	377, 398, 1008
BtgI	CCRYGG	5 cut(s)	256, 412, 469, 1194, 1363
BtsCI	GGATG	4 cut(s)	138, 621, 819, 1156
BtuMI	TCGCGA	1 cut(s)	168
Cac8I	GCNNGC	3 cut(s)	247, 358, 790
CciNI	GCGGCCGC	1 cut(s)	754
CfoI	GCGC	6 cut(s)	11, 245, 362, 511, 568, 1370
Cfr10I	RCCGGY	3 cut(s)	25, 745, 1171
Cfr13I	GGNCC	6 cut(s)	28, 220, 288, 289, 294, 700
Cfr42I	CCGCGG	1 cut(s)	1366
ClaI	ATCGAT	3 cut(s)	377, 398, 1008
CseI	GACGC	4 cut(s)	94, 223, 1212, 1232
Csp6I	GTAC	2 cut(s)	370, 460
CspAI	ACCGGT	1 cut(s)	25
CviAII	CATG	4 cut(s)	590, 1183, 1195, 1322
CviQI	GTAC	2 cut(s)	370, 460
DdeI	CTNAG	3 cut(s)	133, 1251, 1332
DinI	GGCGCC	2 cut(s)	10, 510
DpnI	GATC	6 cut(s)	350, 483, 620, 762, 1007, 1040
DpnII	GATC	6 cut(s)	348, 481, 618, 760, 1005, 1038
EaeI	YGGCCR	2 cut(s)	463, 754
EagI	CGGCCG	2 cut(s)	463, 754
Eam1104I	CTCTTC	2 cut(s)	450, 1038
EarI	CTCTTC	2 cut(s)	450, 1038
EciI	GGCGGA	4 cut(s)	41, 53, 241, 732
Ecl136II	GAGCTC	1 cut(s)	331
EclXI	CGGCCG	2 cut(s)	463, 754
Eco130I	CCWWGG	1 cut(s)	1194
Eco24I	GRGCYC	3 cut(s)	292, 333, 948
Eco31I	GGTCTC	1 cut(s)	994
Eco32I	GATATC	1 cut(s)	958
Eco47I	GGWCC	3 cut(s)	28, 220, 294
Eco52I	CGGCCG	2 cut(s)	463, 754
Eco53kI	GAGCTC	1 cut(s)	331
EcoICRI	GAGCTC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	177, 474
EcoRV	GATATC	1 cut(s)	958
EcoT14I	CCWWGG	1 cut(s)	1194
EcoT22I	ATGCAT	2 cut(s)	871, 1123
EcoT38I	GRGCYC	3 cut(s)	292, 333, 948
EgeI	GGCGCC	2 cut(s)	10, 510
EheI	GGCGCC	2 cut(s)	10, 510
ErhI	CCWWGG	1 cut(s)	1194
FaeI	CATG	4 cut(s)	593, 1186, 1198, 1325
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	4 cut(s)	589, 1182, 1194, 1321
FauI	CCCGC	1 cut(s)	687
FblI	GTMKAC	3 cut(s)	213, 228, 1178
FokI	GGATG	4 cut(s)	125, 628, 826, 1143
FriOI	GRGCYC	3 cut(s)	292, 333, 948
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	6 cut(s)	10, 244, 361, 510, 567, 1369
GsuI	CTGGAG	1 cut(s)	200
HaeII	RGCGCY	2 cut(s)	12, 512
HaeIII	GGCC	6 cut(s)	290, 465, 474, 701, 756, 1171
HapII	CCGG	8 cut(s)	26, 292, 523, 540, 638, 746, 983, 1172
HgaI	GACGC	4 cut(s)	94, 223, 1212, 1232
HhaI	GCGC	6 cut(s)	11, 245, 362, 511, 568, 1370
Hin1I	GRCGYC	3 cut(s)	9, 105, 509
Hin1II	CATG	4 cut(s)	593, 1186, 1198, 1325
Hin6I	GCGC	6 cut(s)	9, 243, 360, 509, 566, 1368
HinP1I	GCGC	6 cut(s)	9, 243, 360, 509, 566, 1368
HincII	GTYRAC	2 cut(s)	214, 1222
HindII	GTYRAC	2 cut(s)	214, 1222
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	7 cut(s)	204, 215, 266, 276, 374, 395, 979
HpaII	CCGG	8 cut(s)	26, 292, 523, 540, 638, 746, 983, 1172
HphI	GGTGA	5 cut(s)	15, 64, 619, 676, 841
Hpy166II	GTNNAC	5 cut(s)	214, 229, 547, 1179, 1222
Hpy188I	TCNGA	6 cut(s)	203, 220, 275, 430, 623, 1065
Hpy188III	TCNNGA	5 cut(s)	112, 167, 638, 953, 991
Hpy8I	GTNNAC	5 cut(s)	214, 229, 547, 1179, 1222
Hpy99I	CGWCG	5 cut(s)	110, 168, 215, 773, 800
HpyAV	CCTTC	7 cut(s)	529, 569, 767, 826, 830, 988, 1138
HpyCH4III	ACNGT	1 cut(s)	1313
HpyCH4IV	ACGT	2 cut(s)	650, 795
HpyCH4V	TGCA	7 cut(s)	403, 806, 869, 912, 1030, 1098, 1121
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 86, 240, 251, 471, 565, 1273
HpyF3I	CTNAG	3 cut(s)	133, 1251, 1332
HpySE526I	ACGT	2 cut(s)	650, 795
Hsp92I	GRCGYC	3 cut(s)	9, 105, 509
Hsp92II	CATG	4 cut(s)	593, 1186, 1198, 1325
HspAI	GCGC	6 cut(s)	9, 243, 360, 509, 566, 1368
KasI	GGCGCC	2 cut(s)	8, 508
Kpn2I	TCCGGA	1 cut(s)	637
KspI	CCGCGG	1 cut(s)	1366
Kzo9I	GATC	6 cut(s)	348, 481, 618, 760, 1005, 1038
LmnI	GCTCC	7 cut(s)	181, 204, 254, 276, 493, 533, 683
Lsp1109I	GCAGC	4 cut(s)	738, 765, 790, 1213
LweI	GCATC	5 cut(s)	390, 1003, 1108, 1165, 1254
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	2 cut(s)	650, 795
MaeIII	GTNAC	1 cut(s)	1291
MalI	GATC	6 cut(s)	350, 483, 620, 762, 1007, 1040
MbiI	CCGCTC	1 cut(s)	184
MboI	GATC	6 cut(s)	348, 481, 618, 760, 1005, 1038
MfeI	CAATTG	2 cut(s)	704, 1346
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	5 cut(s)	292, 333, 530, 680, 948
MluCI	AATT	4 cut(s)	704, 1083, 1231, 1346
Mly113I	GGCGCC	2 cut(s)	9, 509
MlyI	GAGTC	2 cut(s)	209, 275
MmeI	TCCRAC	1 cut(s)	177
Mph1103I	ATGCAT	2 cut(s)	871, 1123
MroI	TCCGGA	1 cut(s)	637
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	3 cut(s)	419, 1086, 1149
MslI	CAYNNNNRTG	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	1365
MspI	CCGG	8 cut(s)	26, 292, 523, 540, 638, 746, 983, 1172
MspR9I	CCNGG	3 cut(s)	179, 292, 476
MunI	CAATTG	2 cut(s)	704, 1346
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	2 cut(s)	179, 476
MwoI	GCNNNNNNNGC	7 cut(s)	63, 86, 240, 251, 471, 565, 1273
NarI	GGCGCC	2 cut(s)	9, 509
NciI	CCSGG	1 cut(s)	292
NcoI	CCATGG	1 cut(s)	1194
NdeII	GATC	6 cut(s)	348, 481, 618, 760, 1005, 1038
NlaIII	CATG	4 cut(s)	593, 1186, 1198, 1325
NlaIV	GGNNCC	5 cut(s)	10, 262, 290, 296, 510
NotI	GCGGCCGC	1 cut(s)	754
NruI	TCGCGA	1 cut(s)	168
NsiI	ATGCAT	2 cut(s)	871, 1123
PcsI	WCGNNNNNNNCGW	3 cut(s)	165, 231, 570
PctI	GAATGC	1 cut(s)	673
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	5 cut(s)	204, 276, 374, 395, 979
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	2 cut(s)	178, 475
PinAI	ACCGGT	1 cut(s)	25
Ple19I	CGATCG	1 cut(s)	1041
PleI	GAGTC	2 cut(s)	209, 274
PluTI	GGCGCC	2 cut(s)	12, 512
PpsI	GAGTC	2 cut(s)	209, 274
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	2 cut(s)	177, 474
PspGI	CCWGG	2 cut(s)	177, 474
PspN4I	GGNNCC	5 cut(s)	10, 262, 290, 296, 510
PspOMI	GGGCCC	1 cut(s)	288
PspPI	GGNCC	6 cut(s)	28, 220, 288, 289, 294, 700
PsuI	RGATCY	1 cut(s)	348
PsyI	GACNNNGTC	1 cut(s)	224
PvuI	CGATCG	1 cut(s)	1041
RruI	TCGCGA	1 cut(s)	168
RsaI	GTAC	2 cut(s)	371, 461
RsaNI	GTAC	2 cut(s)	370, 460
RseI	CAYNNNNRTG	1 cut(s)	662
SacI	GAGCTC	1 cut(s)	333
SacII	CCGCGG	1 cut(s)	1366
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	3 cut(s)	419, 1086, 1149
Sau3AI	GATC	6 cut(s)	348, 481, 618, 760, 1005, 1038
Sau96I	GGNCC	6 cut(s)	28, 220, 288, 289, 294, 700
SchI	GAGTC	2 cut(s)	209, 275
ScrFI	CCNGG	3 cut(s)	179, 292, 476
SduI	GDGCHC	5 cut(s)	292, 333, 530, 680, 948
SfaNI	GCATC	5 cut(s)	390, 1003, 1108, 1165, 1254
SfiI	GGCCNNNNNGGCC	1 cut(s)	471
SfoI	GGCGCC	2 cut(s)	10, 510
Sfr303I	CCGCGG	1 cut(s)	1366
SgrBI	CCGCGG	1 cut(s)	1366
SinI	GGWCC	3 cut(s)	28, 220, 294
SmiMI	CAYNNNNRTG	1 cut(s)	662
Sse9I	AATT	4 cut(s)	704, 1083, 1231, 1346
SspDI	GGCGCC	2 cut(s)	8, 508
SspMI	CTAG	1 cut(s)	326
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	3 cut(s)	177, 290, 474
StyI	CCWWGG	1 cut(s)	1194
TaaI	ACNGT	1 cut(s)	1313
TaiI	ACGT	2 cut(s)	653, 798
TasI	AATT	4 cut(s)	704, 1083, 1231, 1346
TauI	GCSGC	7 cut(s)	14, 57, 92, 468, 756, 759, 1368
TfiI	GAWTC	5 cut(s)	204, 276, 374, 395, 979
Tru1I	TTAA	3 cut(s)	419, 1086, 1149
Tru9I	TTAA	3 cut(s)	419, 1086, 1149
TseI	GCWGC	4 cut(s)	726, 778, 803, 1226
TspDTI	ATGAA	2 cut(s)	578, 1157
TspGWI	ACGGA	2 cut(s)	152, 429
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	2 cut(s)	178, 475
VpaK11BI	GGWCC	3 cut(s)	28, 220, 294
XmiI	GTMKAC	3 cut(s)	213, 228, 1178
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	1 cut(s)	326
Zsp2I	ATGCAT	2 cut(s)	871, 1123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.