Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005891

Physical Location & Seq

Genomic Coordinates Forward (+)

26968568 .. 26970270

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCGGACGTGGAGGTCGGTTTGTTGAGGCCGCGAATTACTTGACGGAGATGACCGAGTTGGGGTTGATGCCGATTTCGCAGTGCTTTGATTTGGTTACGGATGGATTGAAGAATAGTGGGAAGCATGATCCGGCTAAGACAATTGAGCAATTGGAAGTTTCTCTTAGGGGATGGTCTATTTGGAGATTTGGCGATGGATGCTCTGCGAGGTCTTGGGTTGATGACGGGAGTGGGTGTGGAGTTCTTAATGATTTGGCTACTGAATTTAGCGTAATTTTAATCTTAAATACTCATTTCCAGCACTTTTTGAATGCTAATCGTTGGGATTCTAAGACTTTGCTTCGTACGTTGCCTACTTCACCGTTGGGCGAATTCTCGGCAGTCCAAGTTTCGAACTGCTATGACCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

137

Amino Acids

15.17

Weight (kDa)

5.26

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18390
fragaria_vesca	FvH4_4g11972
malus_domestica	MD04G1235400.v1.1
prunus_persica	Prupe.6G355300_v2.0.a1
pyrus_communis	pycom04g20890
rosa_chinensis	RchiOBHm_Chr7g0230951
rosa_laevigata	RLG00000001439 RLG00000002174 RLG00000002176
rosa_multiflora	Rmu_sc0000453.1_g000016 Rmu_sc0000453.1_g000017 Rmu_sc0002014.1_g000047
rosa_roxburghii	Rroxscaffold_3G00229640 Rroxscaffold_3G00238690 Rroxscaffold_3G00238710 Rroxscaffold_3G00238720 Rroxscaffold_3G00238730
rosa_rugosa	Rorug07G0263500
rosa_samantha	Rh7AG416900 Rh7AG417000 Rh7BG392800 Rh7BG392900 Rh7CG436000 Rh7CG436100 Rh7DG411100 Rh7DG411200
rosa_wichuraiana	Rw1G007620 Rw7G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	15
AccII	CGCG	1 cut(s)	35
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	266, 374
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgeI	ACCGGT	1 cut(s)	408
AgsI	TTSAA	2 cut(s)	112, 313
AjiI	CACGTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	2 cut(s)	3, 30
ApoI	RAATTY	2 cut(s)	266, 374
AsiGI	ACCGGT	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	354
AsuII	TTCGAA	1 cut(s)	395
BccI	CCATC	3 cut(s)	98, 168, 191
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmgBI	CACGTC	1 cut(s)	11
BmsI	GCATC	2 cut(s)	60, 191
Bpu14I	TTCGAA	1 cut(s)	395
BsaWI	WCCGGW	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse118I	RCCGGY	1 cut(s)	408
BseGI	GGATG	3 cut(s)	109, 179, 206
BseLI	CCNNNNNNNGG	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	5, 32
BshTI	ACCGGT	1 cut(s)	408
BsiSI	CCGG	3 cut(s)	6, 134, 409
BsiWI	CGTACG	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	5, 32
Bsp119I	TTCGAA	1 cut(s)	395
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	2 cut(s)	5, 32
BspFNI	CGCG	1 cut(s)	35
BspPI	GGATC	1 cut(s)	125
BspT104I	TTCGAA	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	408
BssAI	RCCGGY	1 cut(s)	408
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	395
BstDEI	CTNAG	3 cut(s)	138, 167, 333
BstF5I	GGATG	3 cut(s)	109, 179, 206
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 201
BstUI	CGCG	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	5, 32
BtgZI	GCGATG	1 cut(s)	210
BtrI	CACGTC	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	109, 179, 206
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	348
CspAI	ACCGGT	1 cut(s)	408
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	4 cut(s)	5, 32, 137, 260
CviKI_1	RGCY	4 cut(s)	5, 32, 137, 260
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	3 cut(s)	138, 167, 333
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DrdI	GACNNNNNNGTC	1 cut(s)	15
DseDI	GACNNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	3
EcoRI	GAATTC	1 cut(s)	374
FaeI	CATG	1 cut(s)	131
FaiI	YATR	2 cut(s)	129, 405
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FatI	CATG	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	3 cut(s)	116, 186, 213
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	5, 32
HapII	CCGG	3 cut(s)	6, 134, 409
Hin1II	CATG	1 cut(s)	131
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	3 cut(s)	6, 134, 409
HphI	GGTGA	1 cut(s)	354
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4IV	ACGT	2 cut(s)	10, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 201
HpyF3I	CTNAG	3 cut(s)	138, 167, 333
HpySE526I	ACGT	2 cut(s)	10, 350
Hsp92II	CATG	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	19, 147, 314
LweI	GCATC	2 cut(s)	60, 191
MaeII	ACGT	2 cut(s)	10, 350
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	124
MfeI	CAATTG	2 cut(s)	144, 152
MluCI	AATT	6 cut(s)	37, 144, 152, 266, 276, 374
MnlI	CCTC	3 cut(s)	8, 22, 204
MseI	TTAA	3 cut(s)	249, 281, 287
MspI	CCGG	3 cut(s)	6, 134, 409
MunI	CAATTG	2 cut(s)	144, 152
Mva1269I	GAATGC	1 cut(s)	319
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	79, 201
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	131
NmeAIII	GCCGAG	1 cut(s)	359
NspV	TTCGAA	1 cut(s)	395
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	329
Pfl23II	CGTACG	1 cut(s)	347
PinAI	ACCGGT	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	34
PspLI	CGTACG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	249, 281, 287
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	130
SetI	ASST	4 cut(s)	13, 19, 215, 353
SfaNI	GCATC	2 cut(s)	60, 191
SfuI	TTCGAA	1 cut(s)	395
Sse9I	AATT	6 cut(s)	37, 144, 152, 266, 276, 374
SsiI	CCGC	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	366
TaiI	ACGT	2 cut(s)	13, 353
TaqI	TCGA	1 cut(s)	395
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	6 cut(s)	37, 144, 152, 266, 276, 374
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	3 cut(s)	249, 281, 287
Tru9I	TTAA	3 cut(s)	249, 281, 287
TscAI	CASTG	1 cut(s)	89
TspGWI	ACGGA	2 cut(s)	62, 116
TspRI	CASTG	1 cut(s)	89
XapI	RAATTY	2 cut(s)	266, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.