Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000453.1

Orthogroup ID

OG0005891

Physical Location & Seq

Genomic Coordinates Forward (+)

51217 .. 51900

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000453.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgaaagaggcgcagctgttcttggaggagatgagtgagaaggggtttaatccgccggttggcggccgtgatctgctggttgaggggttgctcaatgctggttatattgaggctgccaaagatatggtgaggaaaatggtgaaggaaaactgtgtacttgatgtttctacttttaatgcattgctagaagctatttgtaagtctggggaggttgagttttgcattggtctttattgggaggcaactggattggggctttgtcctgatattaatacttataaagtgttgataccggtggttttgaaggttgggaggatggatgatgcatttaggcttttgcataatgcgattgaggatgggcacaggccgtttccgggcttgtatgcccccattgttaaggggatgtgtaggaatggtgagtttgatgatgcattttgtttctttagtgagatgaaggtcaagggtcatcctccgaatcggccggtatacaccatgttgataactatggctggacgtggaggccggtttgttgaggctgcgaattacttgatggagatgactgatttagggttgatgccgatttcgcgctgctttgatttggttactgatgggttgaagaatagtgggaagcatgatttggctaagagaattgagcaattggaagtttctcttaggggtacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

227

Amino Acids

25.25

Weight (kDa)

5.48

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18390
fragaria_vesca	FvH4_4g11972
malus_domestica	MD04G1235400.v1.1
prunus_persica	Prupe.6G355300_v2.0.a1
pyrus_communis	pycom04g20890
rosa_chinensis	RchiOBHm_Chr7g0230951
rosa_laevigata	RLG00000001439 RLG00000002174 RLG00000002176
rosa_multiflora	Rmu_sc0000453.1_g000016 Rmu_sc0000453.1_g000017 Rmu_sc0002014.1_g000047
rosa_roxburghii	Rroxscaffold_3G00229640 Rroxscaffold_3G00238690 Rroxscaffold_3G00238710 Rroxscaffold_3G00238720 Rroxscaffold_3G00238730
rosa_rugosa	Rorug07G0263500
rosa_samantha	Rh7AG416900 Rh7AG417000 Rh7BG392800 Rh7BG392900 Rh7CG436000 Rh7CG436100 Rh7DG411100 Rh7DG411200
rosa_wichuraiana	Rw1G007620 Rw7G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	1 cut(s)	586
AciI	CCGC	2 cut(s)	53, 63
AcoI	YGGCCR	2 cut(s)	64, 479
AfaI	GTAC	2 cut(s)	156, 679
AfiI	CCNNNNNNNGG	3 cut(s)	59, 62, 374
AgeI	ACCGGT	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	304, 616
AjiI	CACGTC	1 cut(s)	515
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AluBI	AGCT	2 cut(s)	16, 191
AluI	AGCT	2 cut(s)	16, 191
AoxI	GGCC	4 cut(s)	64, 365, 479, 520
ApeKI	GCWGC	4 cut(s)	13, 113, 536, 588
AseI	ATTAAT	1 cut(s)	270
AsiGI	ACCGGT	1 cut(s)	292
AspLEI	GCGC	2 cut(s)	13, 588
AsuC2I	CCSGG	1 cut(s)	375
AsuHPI	GGTGA	3 cut(s)	139, 151, 428
BaeGI	GKGCMC	1 cut(s)	363
BbvI	GCAGC	4 cut(s)	25, 100, 523, 575
BccI	CCATC	4 cut(s)	310, 350, 544, 602
BceAI	ACGGC	2 cut(s)	51, 352
BcnI	CCSGG	1 cut(s)	375
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	5 cut(s)	14, 64, 114, 537, 589
BlsI	GCNGC	5 cut(s)	15, 65, 115, 538, 590
Bme1390I	CCNGG	1 cut(s)	375
BmgBI	CACGTC	1 cut(s)	515
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	3 cut(s)	313, 418, 564
BpuMI	CCSGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 62, 374
Bse118I	RCCGGY	4 cut(s)	55, 292, 481, 522
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	179
BseGI	GGATG	5 cut(s)	321, 325, 361, 408, 466
BseLI	CCNNNNNNNGG	3 cut(s)	59, 62, 374
BseMI	GCAATG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	363
BseX3I	CGGCCG	2 cut(s)	64, 479
BseXI	GCAGC	4 cut(s)	25, 100, 523, 575
Bsh1236I	CGCG	1 cut(s)	586
Bsh1285I	CGRYCG	2 cut(s)	67, 482
BshFI	GGCC	4 cut(s)	66, 367, 481, 522
BshTI	ACCGGT	1 cut(s)	292
BsiEI	CGRYCG	2 cut(s)	67, 482
BsiSI	CCGG	5 cut(s)	56, 293, 374, 482, 523
BslI	CCNNNNNNNGG	3 cut(s)	59, 62, 374
BsnI	GGCC	4 cut(s)	66, 367, 481, 522
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	2 cut(s)	53, 63
BspANI	GGCC	4 cut(s)	66, 367, 481, 522
BspFNI	CGCG	1 cut(s)	586
BsrDI	GCAATG	1 cut(s)	179
BsrFI	RCCGGY	4 cut(s)	55, 292, 481, 522
BsrI	ACTGG	1 cut(s)	250
BssAI	RCCGGY	4 cut(s)	55, 292, 481, 522
BssMI	GATC	1 cut(s)	70
BssNAI	GTATAC	1 cut(s)	487
Bst1107I	GTATAC	1 cut(s)	487
Bst4CI	ACNGT	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	642, 671
BstF5I	GGATG	5 cut(s)	321, 325, 361, 408, 466
BstFNI	CGCG	1 cut(s)	586
BstHHI	GCGC	2 cut(s)	13, 588
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMCI	CGRYCG	2 cut(s)	67, 482
BstMWI	GCNNNNNNNGC	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	373
BstSLI	GKGCMC	1 cut(s)	363
BstUI	CGCG	1 cut(s)	586
BstV1I	GCAGC	4 cut(s)	25, 100, 523, 575
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstZ17I	GTATAC	1 cut(s)	487
BstZI	CGGCCG	2 cut(s)	64, 479
BsuRI	GGCC	4 cut(s)	66, 367, 481, 522
BtrI	CACGTC	1 cut(s)	515
BtsCI	GGATG	5 cut(s)	321, 325, 361, 408, 466
CfoI	GCGC	2 cut(s)	13, 588
Cfr10I	RCCGGY	4 cut(s)	55, 292, 481, 522
Csp6I	GTAC	2 cut(s)	155, 678
CspAI	ACCGGT	1 cut(s)	292
CviAII	CATG	3 cut(s)	493, 632, 681
CviQI	GTAC	2 cut(s)	155, 678
DdeI	CTNAG	2 cut(s)	642, 671
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EaeI	YGGCCR	2 cut(s)	64, 479
EagI	CGGCCG	2 cut(s)	64, 479
EciI	GGCGGA	1 cut(s)	42
EclXI	CGGCCG	2 cut(s)	64, 479
Eco52I	CGGCCG	2 cut(s)	64, 479
EcoT22I	ATGCAT	3 cut(s)	181, 328, 433
FaeI	CATG	3 cut(s)	496, 635, 684
FalI	AAGNNNNNCTT	1 cut(s)	654
FatI	CATG	3 cut(s)	492, 631, 680
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	5 cut(s)	14, 64, 114, 537, 589
FokI	GGATG	5 cut(s)	328, 332, 368, 415, 453
Fsp4HI	GCNGC	5 cut(s)	14, 64, 114, 537, 589
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	2 cut(s)	12, 587
GluI	GCNGC	5 cut(s)	14, 64, 114, 537, 589
HaeIII	GGCC	4 cut(s)	66, 367, 481, 522
HapII	CCGG	5 cut(s)	56, 293, 374, 482, 523
HhaI	GCGC	2 cut(s)	13, 588
Hin1II	CATG	3 cut(s)	496, 635, 684
Hin6I	GCGC	2 cut(s)	11, 586
HinP1I	GCGC	2 cut(s)	11, 586
HinfI	GANTC	1 cut(s)	475
HpaII	CCGG	5 cut(s)	56, 293, 374, 482, 523
HphI	GGTGA	3 cut(s)	139, 151, 428
Hpy166II	GTNNAC	2 cut(s)	155, 487
Hpy188I	TCNGA	1 cut(s)	474
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	2 cut(s)	155, 487
HpyAV	CCTTC	4 cut(s)	34, 136, 298, 448
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	5 cut(s)	179, 222, 326, 340, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	583
HpyF3I	CTNAG	2 cut(s)	642, 671
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	3 cut(s)	496, 635, 684
HspAI	GCGC	2 cut(s)	11, 586
Kzo9I	GATC	1 cut(s)	70
Lsp1109I	GCAGC	4 cut(s)	25, 100, 523, 575
LweI	GCATC	3 cut(s)	313, 418, 564
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	628
MfeI	CAATTG	1 cut(s)	656
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	3 cut(s)	541, 648, 656
Mph1103I	ATGCAT	3 cut(s)	181, 328, 433
MseI	TTAA	4 cut(s)	48, 174, 270, 396
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	5 cut(s)	56, 293, 374, 482, 523
MspR9I	CCNGG	1 cut(s)	375
MunI	CAATTG	1 cut(s)	656
MvnI	CGCG	1 cut(s)	586
MwoI	GCNNNNNNNGC	1 cut(s)	583
NciI	CCSGG	1 cut(s)	375
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	3 cut(s)	496, 635, 684
NsiI	ATGCAT	3 cut(s)	181, 328, 433
PfeI	GAWTC	1 cut(s)	475
PinAI	ACCGGT	1 cut(s)	292
PkrI	GCNGC	5 cut(s)	15, 65, 115, 538, 590
PshBI	ATTAAT	1 cut(s)	270
PsiI	TTATAA	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	2 cut(s)	156, 679
RsaNI	GTAC	2 cut(s)	155, 678
SaqAI	TTAA	4 cut(s)	48, 174, 270, 396
SatI	GCNGC	5 cut(s)	14, 64, 114, 537, 589
Sau3AI	GATC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	6 cut(s)	18, 193, 213, 309, 459, 517
SfaNI	GCATC	3 cut(s)	313, 418, 564
Sse9I	AATT	3 cut(s)	541, 648, 656
SsiI	CCGC	2 cut(s)	53, 63
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	1 cut(s)	517
TasI	AATT	3 cut(s)	541, 648, 656
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	4 cut(s)	48, 174, 270, 396
Tru9I	TTAA	4 cut(s)	48, 174, 270, 396
TseI	GCWGC	4 cut(s)	13, 113, 536, 588
TspDTI	ATGAA	2 cut(s)	17, 467
VspI	ATTAAT	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	1 cut(s)	185
Zsp2I	ATGCAT	3 cut(s)	181, 328, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.