Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005891

Physical Location & Seq

Genomic Coordinates Reverse (-)

57791496 .. 57792692

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG411200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAGCGCACCCTCAACAAGCTCCGCATCTCCGTCGACTCCGACCTCGTCTTCCGCGTCCTCCGCGCCTGCTCCGCCTCCGCCACCGAGTCCCTCCGCTTCTTCAATTGGGCCCGCACCCACCACCCCACCTACCGCCCCACCACCCTCGAAACCGAAGAGCTCGTCAAGACCCTCGCCCGCTCCAAAAAATACGAGTCCATGTGGAAAATCCTCGACTCCATGAAAGCCCACCACGGTTTAACACTCTCCCAGGACACCCTTTGCTTCATTATCCAAGAGTACGGCAAGCACGGCCTGATCGACCAGGCCGTTGAGCTCTTCAATCGAGCTCCCAAGACCTTTAACTGCTTGCAGTCGGTGGAAGTTCACAACGCTCTGCTCTTCTCTCTCTGCCAGACTAAGCTCTTTCACGGCGCTTATGCCTTGGTGAGGAGGCTGATTCGGAAAGGGCTCGTTCCGAATAAGATGACGTATTCCATTTTGGTCAATGCTTGGTGTTCTAATGGGAAGATGAAGGAGGCGCAGCTGTTCTTGGAGGAGATGAGTGAGAAGGGGTTTAATCCGCCGGTTCGAGGCCGTGATCTGCTGGTTGAGGGGTTGCTCAATGCTGGTTATATTGAGGCTGCCAAAGATATGGTAAGGAAAATGGTGAAAGAAAACTGTGTGCCTGATGTTTCTACTTTTAATGCATTGTTAGAAGCTATTTGTAAGTCTGGGGAGGTTGAGTTTTGCATTGGTCTTTATTGGGAGGCAACTGGATTGGGGCTTTGTCCTGATATTAATACTTATAAAGTGTTGATACCGGCGGTTTCGAAGGTTGGAAGGATGGATGATGCATTTAGGCTTTTGCATAATGCGATTGAGGACGGGCACAGGCCGTTTCCGGGCTTGTATGCCCCTATTGTTAAGGGGATGTGTAGGAATGGTCAGTTTGATGATGCATTTTGTTTCTTTAGTGAGATGAAGGTCAAGGGTCATCCCCCGAATCGGCCGGTATATACCATGTTGATAACTATGGCTGGACGTGGAGGCCGGTTTGTTGAGGCTGCGAATTACTTGATGGAGATGACTGAGTTGGGGTTGATGCCGATTTCGCGGTGCTTTGATTTGGTCACGGATGGATTGAAGAATAGTGGGAAGCATGATCTGGCTAAGAGAATTGAGCAATTGGAAGTTTCTCTTAGGGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

398

Amino Acids

44.96

Weight (kDa)

8.73

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	123 - 167	1e-06	PPR repeat family
TPR_24	PF23276	148 - 250	2.2e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	150 - 183	9.8e-11	PPR repeat
PPR	PF01535	158 - 187	6.2e-06	PPR repeat
PPR_3	PF13812	179 - 237	9.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	197 - 238	6.5e-08	PPR repeat family
PPR_2	PF13041	224 - 271	5.5e-07	PPR repeat family
PPR_2	PF13041	302 - 339	2.4e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18390
fragaria_vesca	FvH4_4g11972
malus_domestica	MD04G1235400.v1.1
prunus_persica	Prupe.6G355300_v2.0.a1
pyrus_communis	pycom04g20890
rosa_chinensis	RchiOBHm_Chr7g0230951
rosa_laevigata	RLG00000001439 RLG00000002174 RLG00000002176
rosa_multiflora	Rmu_sc0000453.1_g000016 Rmu_sc0000453.1_g000017 Rmu_sc0002014.1_g000047
rosa_roxburghii	Rroxscaffold_3G00229640 Rroxscaffold_3G00238690 Rroxscaffold_3G00238710 Rroxscaffold_3G00238720 Rroxscaffold_3G00238730
rosa_rugosa	Rorug07G0263500
rosa_samantha	Rh7AG416900 Rh7AG417000 Rh7BG392800 Rh7BG392900 Rh7CG436000 Rh7CG436100 Rh7DG411100 Rh7DG411200
rosa_wichuraiana	Rw1G007620 Rw7G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	792
AccBSI	CCGCTC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	36
AccII	CGCG	3 cut(s)	57, 66, 1099
AcoI	YGGCCR	1 cut(s)	992
AfaI	GTAC	2 cut(s)	284, 1192
AfiI	CCNNNNNNNGG	4 cut(s)	432, 575, 887, 990
AgsI	TTSAA	3 cut(s)	106, 325, 1129
AjiI	CACGTC	1 cut(s)	1028
AjnI	CCWGG	2 cut(s)	252, 306
AluBI	AGCT	7 cut(s)	22, 163, 319, 332, 406, 529, 704
AluI	AGCT	7 cut(s)	22, 163, 319, 332, 406, 529, 704
Alw21I	GWGCWC	3 cut(s)	165, 321, 334
AoxI	GGCC	7 cut(s)	111, 295, 309, 577, 878, 992, 1033
ApaI	GGGCCC	1 cut(s)	115
ApeKI	GCWGC	3 cut(s)	526, 626, 1049
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AseI	ATTAAT	1 cut(s)	783
AspLEI	GCGC	4 cut(s)	9, 68, 419, 526
AspS9I	GGNCC	2 cut(s)	111, 112
AsuC2I	CCSGG	1 cut(s)	888
AsuHPI	GGTGA	2 cut(s)	442, 664
AsuII	TTCGAA	1 cut(s)	815
BaeGI	GKGCMC	2 cut(s)	115, 876
BanII	GRGCYC	5 cut(s)	115, 165, 321, 334, 456
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	3 cut(s)	165, 321, 334
BbvI	GCAGC	3 cut(s)	538, 613, 1036
BccI	CCATC	3 cut(s)	823, 1057, 1115
BceAI	ACGGC	6 cut(s)	296, 301, 310, 430, 564, 865
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	2 cut(s)	254, 308
BcnI	CCSGG	1 cut(s)	888
BfoI	RGCGCY	1 cut(s)	420
BisI	GCNGC	3 cut(s)	527, 627, 1050
BlsI	GCNGC	3 cut(s)	528, 628, 1051
Bme1390I	CCNGG	3 cut(s)	254, 308, 888
BmgBI	CACGTC	1 cut(s)	1028
BmgT120I	GGNCC	2 cut(s)	111, 112
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	3 cut(s)	254, 308, 888
BmsI	GCATC	4 cut(s)	36, 826, 931, 1077
BpiI	GAAGAC	1 cut(s)	43
Bpu14I	TTCGAA	1 cut(s)	815
BpuMI	CCSGG	1 cut(s)	888
BsaJI	CCNNGG	3 cut(s)	235, 252, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	4 cut(s)	432, 575, 887, 990
Bse118I	RCCGGY	4 cut(s)	568, 805, 994, 1035
Bse1I	ACTGG	1 cut(s)	763
BseBI	CCWGG	2 cut(s)	254, 308
BseDI	CCNNGG	3 cut(s)	235, 252, 426
BseGI	GGATG	5 cut(s)	834, 838, 921, 979, 1126
BseLI	CCNNNNNNNGG	4 cut(s)	432, 575, 887, 990
BseMII	CTCAG	1 cut(s)	1065
BseNI	ACTGG	1 cut(s)	763
BseRI	GAGGAG	2 cut(s)	448, 554
BseSI	GKGCMC	2 cut(s)	115, 876
BseX3I	CGGCCG	1 cut(s)	992
BseXI	GCAGC	3 cut(s)	538, 613, 1036
Bsh1236I	CGCG	3 cut(s)	57, 66, 1099
Bsh1285I	CGRYCG	1 cut(s)	995
BshFI	GGCC	7 cut(s)	113, 297, 311, 579, 880, 994, 1035
BsiEI	CGRYCG	1 cut(s)	995
BsiHKAI	GWGCWC	3 cut(s)	165, 321, 334
BsiSI	CCGG	5 cut(s)	569, 806, 887, 995, 1036
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	4 cut(s)	432, 575, 887, 990
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	7 cut(s)	113, 297, 311, 579, 880, 994, 1035
Bsp119I	TTCGAA	1 cut(s)	815
Bsp120I	GGGCCC	1 cut(s)	111
Bsp1286I	GDGCHC	6 cut(s)	115, 165, 321, 334, 456, 876
Bsp143I	GATC	3 cut(s)	300, 583, 1147
BspANI	GGCC	7 cut(s)	113, 297, 311, 579, 880, 994, 1035
BspCNI	CTCAG	1 cut(s)	1066
BspFNI	CGCG	3 cut(s)	57, 66, 1099
BspLI	GGNNCC	1 cut(s)	113
BspQI	GCTCTTC	3 cut(s)	153, 326, 389
BspT104I	TTCGAA	1 cut(s)	815
BsrBI	CCGCTC	1 cut(s)	183
BsrFI	RCCGGY	4 cut(s)	568, 805, 994, 1035
BsrI	ACTGG	1 cut(s)	763
BssAI	RCCGGY	4 cut(s)	568, 805, 994, 1035
BssECI	CCNNGG	3 cut(s)	235, 252, 426
BssMI	GATC	3 cut(s)	300, 583, 1147
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	254, 308
Bst4CI	ACNGT	2 cut(s)	239, 665
Bst6I	CTCTTC	3 cut(s)	153, 326, 389
BstBI	TTCGAA	1 cut(s)	815
BstC8I	GCNNGC	5 cut(s)	70, 115, 181, 290, 353
BstDEI	CTNAG	4 cut(s)	402, 1074, 1155, 1184
BstDSI	CCRYGG	1 cut(s)	235
BstENI	CCTNNNNNAGG	1 cut(s)	430
BstF5I	GGATG	5 cut(s)	834, 838, 921, 979, 1126
BstFNI	CGCG	3 cut(s)	57, 66, 1099
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	4 cut(s)	9, 68, 419, 526
BstKTI	GATC	3 cut(s)	303, 586, 1150
BstMBI	GATC	3 cut(s)	300, 583, 1147
BstMCI	CGRYCG	1 cut(s)	995
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 74, 294, 1096
BstNI	CCWGG	2 cut(s)	254, 308
BstSCI	CCNGG	3 cut(s)	252, 306, 886
BstSLI	GKGCMC	2 cut(s)	115, 876
BstUI	CGCG	3 cut(s)	57, 66, 1099
BstV1I	GCAGC	3 cut(s)	538, 613, 1036
BstV2I	GAAGAC	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstZI	CGGCCG	1 cut(s)	992
BsuRI	GGCC	7 cut(s)	113, 297, 311, 579, 880, 994, 1035
BtgI	CCRYGG	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	1028
BtsCI	GGATG	5 cut(s)	834, 838, 921, 979, 1126
Cac8I	GCNNGC	5 cut(s)	70, 115, 181, 290, 353
CfoI	GCGC	4 cut(s)	9, 68, 419, 526
Cfr10I	RCCGGY	4 cut(s)	568, 805, 994, 1035
Cfr13I	GGNCC	2 cut(s)	111, 112
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	283, 1191
CviAII	CATG	5 cut(s)	202, 223, 1006, 1145, 1194
CviQI	GTAC	2 cut(s)	283, 1191
DdeI	CTNAG	4 cut(s)	402, 1074, 1155, 1184
DpnI	GATC	3 cut(s)	302, 585, 1149
DpnII	GATC	3 cut(s)	300, 583, 1147
EaeI	YGGCCR	1 cut(s)	992
EagI	CGGCCG	1 cut(s)	992
Eam1104I	CTCTTC	3 cut(s)	153, 326, 389
EarI	CTCTTC	3 cut(s)	153, 326, 389
EciI	GGCGGA	3 cut(s)	64, 70, 555
Ecl136II	GAGCTC	3 cut(s)	163, 319, 332
EclXI	CGGCCG	1 cut(s)	992
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	5 cut(s)	115, 165, 321, 334, 456
Eco52I	CGGCCG	1 cut(s)	992
Eco53kI	GAGCTC	3 cut(s)	163, 319, 332
EcoICRI	GAGCTC	3 cut(s)	163, 319, 332
EcoNI	CCTNNNNNAGG	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	252, 306
EcoT14I	CCWWGG	1 cut(s)	426
EcoT22I	ATGCAT	3 cut(s)	694, 841, 946
EcoT38I	GRGCYC	5 cut(s)	115, 165, 321, 334, 456
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	5 cut(s)	205, 226, 1009, 1148, 1197
FalI	AAGNNNNNCTT	1 cut(s)	1167
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	5 cut(s)	201, 222, 1005, 1144, 1193
FauI	CCCGC	2 cut(s)	122, 188
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	527, 627, 1050
FokI	GGATG	5 cut(s)	841, 845, 928, 966, 1133
FriOI	GRGCYC	5 cut(s)	115, 165, 321, 334, 456
Fsp4HI	GCNGC	3 cut(s)	527, 627, 1050
GlaI	GCGC	4 cut(s)	8, 67, 418, 525
GluI	GCNGC	3 cut(s)	527, 627, 1050
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	7 cut(s)	113, 297, 311, 579, 880, 994, 1035
HapII	CCGG	5 cut(s)	569, 806, 887, 995, 1036
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	4 cut(s)	9, 68, 419, 526
Hin1II	CATG	5 cut(s)	205, 226, 1009, 1148, 1197
Hin6I	GCGC	4 cut(s)	7, 66, 417, 524
HinP1I	GCGC	4 cut(s)	7, 66, 417, 524
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	6 cut(s)	38, 89, 197, 218, 442, 988
HpaII	CCGG	5 cut(s)	569, 806, 887, 995, 1036
HphI	GGTGA	2 cut(s)	442, 664
Hpy166II	GTNNAC	2 cut(s)	37, 370
Hpy188I	TCNGA	3 cut(s)	43, 447, 462
Hpy188III	TCNNGA	2 cut(s)	169, 776
Hpy8I	GTNNAC	2 cut(s)	37, 370
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	5 cut(s)	511, 547, 811, 819, 961
HpyCH4III	ACNGT	2 cut(s)	239, 665
HpyCH4IV	ACGT	2 cut(s)	473, 1027
HpyCH4V	TGCA	6 cut(s)	355, 692, 735, 839, 853, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 74, 294, 1096
HpyF3I	CTNAG	4 cut(s)	402, 1074, 1155, 1184
HpySE526I	ACGT	2 cut(s)	473, 1027
Hsp92II	CATG	5 cut(s)	205, 226, 1009, 1148, 1197
HspAI	GCGC	4 cut(s)	7, 66, 417, 524
Kzo9I	GATC	3 cut(s)	300, 583, 1147
LguI	GCTCTTC	3 cut(s)	153, 326, 389
LmnI	GCTCC	5 cut(s)	4, 27, 77, 188, 337
Lsp1109I	GCAGC	3 cut(s)	538, 613, 1036
LweI	GCATC	4 cut(s)	36, 826, 931, 1077
MaeII	ACGT	2 cut(s)	473, 1027
MaeIII	GTNAC	1 cut(s)	1114
MalI	GATC	3 cut(s)	302, 585, 1149
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	3 cut(s)	300, 583, 1147
MboII	GAAGA	7 cut(s)	43, 94, 170, 313, 376, 523, 1141
MfeI	CAATTG	2 cut(s)	106, 1169
MhlI	GDGCHC	6 cut(s)	115, 165, 321, 334, 456, 876
MluCI	AATT	4 cut(s)	106, 1054, 1161, 1169
MlyI	GAGTC	4 cut(s)	32, 98, 206, 212
MmeI	TCCRAC	2 cut(s)	66, 802
Mph1103I	ATGCAT	3 cut(s)	694, 841, 946
MseI	TTAA	6 cut(s)	242, 345, 561, 687, 783, 909
MspA1I	CMGCKG	1 cut(s)	529
MspI	CCGG	5 cut(s)	569, 806, 887, 995, 1036
MspR9I	CCNGG	3 cut(s)	254, 308, 888
MunI	CAATTG	2 cut(s)	106, 1169
MvaI	CCWGG	2 cut(s)	254, 308
MvnI	CGCG	3 cut(s)	57, 66, 1099
MwoI	GCNNNNNNNGC	4 cut(s)	63, 74, 294, 1096
NciI	CCSGG	1 cut(s)	888
NdeII	GATC	3 cut(s)	300, 583, 1147
NlaIII	CATG	5 cut(s)	205, 226, 1009, 1148, 1197
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	1114
NsiI	ATGCAT	3 cut(s)	694, 841, 946
NspV	TTCGAA	1 cut(s)	815
PciSI	GCTCTTC	3 cut(s)	153, 326, 389
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 300, 309
PfeI	GAWTC	2 cut(s)	442, 988
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	528, 628, 1051
PleI	GAGTC	4 cut(s)	32, 97, 205, 212
PpsI	GAGTC	4 cut(s)	32, 97, 205, 212
PshBI	ATTAAT	1 cut(s)	783
PsiI	TTATAA	1 cut(s)	792
Psp124BI	GAGCTC	3 cut(s)	165, 321, 334
Psp6I	CCWGG	2 cut(s)	252, 306
PspGI	CCWGG	2 cut(s)	252, 306
PspN4I	GGNNCC	1 cut(s)	113
PspOMI	GGGCCC	1 cut(s)	111
PspPI	GGNCC	2 cut(s)	111, 112
PsyI	GACNNNGTC	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	529
RsaI	GTAC	2 cut(s)	284, 1192
RsaNI	GTAC	2 cut(s)	283, 1191
SacI	GAGCTC	3 cut(s)	165, 321, 334
SalI	GTCGAC	1 cut(s)	35
SapI	GCTCTTC	3 cut(s)	153, 326, 389
SaqAI	TTAA	6 cut(s)	242, 345, 561, 687, 783, 909
SatI	GCNGC	3 cut(s)	527, 627, 1050
Sau3AI	GATC	3 cut(s)	300, 583, 1147
Sau96I	GGNCC	2 cut(s)	111, 112
SchI	GAGTC	4 cut(s)	32, 98, 206, 212
ScrFI	CCNGG	3 cut(s)	254, 308, 888
SduI	GDGCHC	6 cut(s)	115, 165, 321, 334, 456, 876
SfaNI	GCATC	4 cut(s)	36, 826, 931, 1077
SfuI	TTCGAA	1 cut(s)	815
Sse9I	AATT	4 cut(s)	106, 1054, 1161, 1169
SstI	GAGCTC	3 cut(s)	165, 321, 334
StyD4I	CCNGG	3 cut(s)	252, 306, 886
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	2 cut(s)	239, 665
TaiI	ACGT	2 cut(s)	476, 1030
TaqI	TCGA	7 cut(s)	36, 150, 216, 303, 328, 574, 815
TasI	AATT	4 cut(s)	106, 1054, 1161, 1169
TfiI	GAWTC	2 cut(s)	442, 988
Tru1I	TTAA	6 cut(s)	242, 345, 561, 687, 783, 909
Tru9I	TTAA	6 cut(s)	242, 345, 561, 687, 783, 909
TseFI	GTSAC	1 cut(s)	1114
TseI	GCWGC	3 cut(s)	526, 626, 1049
Tsp45I	GTSAC	1 cut(s)	1114
TspDTI	ATGAA	4 cut(s)	239, 259, 530, 980
TspGWI	ACGGA	2 cut(s)	22, 1133
Tth111I	GACNNNGTC	1 cut(s)	47
VspI	ATTAAT	1 cut(s)	783
XagI	CCTNNNNNAGG	1 cut(s)	430
XmiI	GTMKAC	1 cut(s)	36
Zsp2I	ATGCAT	3 cut(s)	694, 841, 946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.