Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005891

Physical Location & Seq

Genomic Coordinates Forward (+)

26955022 .. 26955318

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGAGCGCACCCTCAACAAGCTCCGCATCGCCGTCGACTCCGACCTCGTCTTCGCCGTGCTCCGCACCTGCTCCGCCTCGCCACCGAGTCCCTCCGCTTCTTCAATTGGGCCCGTACCCACCACCCCACCACCCCTCGAAACCAAAGAGCTCGTCAAGACTCTCGCCCTCTCCAAAAAGTACGAGTCCATGTGGAAAATCCTCGACTCTATGAAAACTCATCACAGGGACCCGCCCCGATTTCACCCCGAAATCTTGAGTGGCCCTACAGGGCCCACTTTAAAGAAATTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

98

Amino Acids

10.88

Weight (kDa)

9.61

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18390
fragaria_vesca	FvH4_4g11972
malus_domestica	MD04G1235400.v1.1
prunus_persica	Prupe.6G355300_v2.0.a1
pyrus_communis	pycom04g20890
rosa_chinensis	RchiOBHm_Chr7g0230951
rosa_laevigata	RLG00000001439 RLG00000002174 RLG00000002176
rosa_multiflora	Rmu_sc0000453.1_g000016 Rmu_sc0000453.1_g000017 Rmu_sc0002014.1_g000047
rosa_roxburghii	Rroxscaffold_3G00229640 Rroxscaffold_3G00238690 Rroxscaffold_3G00238710 Rroxscaffold_3G00238720 Rroxscaffold_3G00238730
rosa_rugosa	Rorug07G0263500
rosa_samantha	Rh7AG416900 Rh7AG417000 Rh7BG392800 Rh7BG392900 Rh7CG436000 Rh7CG436100 Rh7DG411100 Rh7DG411200
rosa_wichuraiana	Rw1G007620 Rw7G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	5 cut(s)	25, 64, 75, 96, 233
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	2 cut(s)	117, 182
AgsI	TTSAA	1 cut(s)	105
AluBI	AGCT	2 cut(s)	22, 151
AluI	AGCT	2 cut(s)	22, 151
Alw21I	GWGCWC	2 cut(s)	63, 153
AoxI	GGCC	3 cut(s)	110, 262, 272
ApaI	GGGCCC	2 cut(s)	114, 276
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	4 cut(s)	35, 67, 138, 170
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	6 cut(s)	110, 111, 229, 263, 272, 273
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	229
BaeGI	GKGCMC	2 cut(s)	114, 276
BanII	GRGCYC	3 cut(s)	114, 153, 276
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	2 cut(s)	63, 153
BceAI	ACGGC	2 cut(s)	17, 41
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BfmI	CTRYAG	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	6 cut(s)	110, 111, 229, 263, 272, 273
BmiI	GGNNCC	4 cut(s)	112, 230, 231, 274
BmsI	GCATC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	277
BseSI	GKGCMC	2 cut(s)	114, 276
BshFI	GGCC	3 cut(s)	112, 264, 274
BsiHKAI	GWGCWC	2 cut(s)	63, 153
BslFI	GGGAC	2 cut(s)	75, 242
BsmFI	GGGAC	2 cut(s)	75, 242
BsnI	GGCC	3 cut(s)	112, 264, 274
Bsp120I	GGGCCC	2 cut(s)	110, 272
Bsp1286I	GDGCHC	4 cut(s)	63, 114, 153, 276
BspACI	CCGC	5 cut(s)	25, 64, 75, 96, 233
BspANI	GGCC	3 cut(s)	112, 264, 274
BspLI	GGNNCC	4 cut(s)	112, 230, 231, 274
BspMI	ACCTGC	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	2 cut(s)	114, 276
BstV2I	GAAGAC	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	112, 264, 274
BtgZI	GCGATG	1 cut(s)	13
BveI	ACCTGC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	6 cut(s)	110, 111, 229, 263, 272, 273
Csp6I	GTAC	2 cut(s)	116, 181
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	5 cut(s)	22, 112, 151, 264, 274
CviKI_1	RGCY	5 cut(s)	22, 112, 151, 264, 274
CviQI	GTAC	2 cut(s)	116, 181
DraI	TTTAAA	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	3 cut(s)	114, 153, 276
Eco47I	GGWCC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	2 cut(s)	229, 272
EcoT38I	GRGCYC	3 cut(s)	114, 153, 276
FaeI	CATG	1 cut(s)	193
FaiI	YATR	2 cut(s)	191, 212
FaqI	GGGAC	2 cut(s)	75, 242
FatI	CATG	1 cut(s)	189
FauI	CCCGC	1 cut(s)	240
FblI	GTMKAC	1 cut(s)	36
FriOI	GRGCYC	3 cut(s)	114, 153, 276
GlaI	GCGC	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	112, 264, 274
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	5 cut(s)	38, 88, 160, 185, 206
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	2 cut(s)	157, 256
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	7
KflI	GGGWCCC	1 cut(s)	229
LmnI	GCTCC	4 cut(s)	4, 27, 66, 77
LpnPI	CCDG	3 cut(s)	82, 211, 255
LweI	GCATC	1 cut(s)	36
MboII	GAAGA	2 cut(s)	43, 93
MfeI	CAATTG	1 cut(s)	105
MhlI	GDGCHC	4 cut(s)	63, 114, 153, 276
MluCI	AATT	2 cut(s)	105, 287
MlyI	GAGTC	5 cut(s)	32, 97, 154, 194, 200
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	7 cut(s)	23, 56, 88, 103, 146, 179, 212
MseI	TTAA	1 cut(s)	281
MunI	CAATTG	1 cut(s)	105
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	4 cut(s)	112, 230, 231, 274
PaqCI	CACCTGC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PflFI	GACNNNGTC	1 cut(s)	47
PleI	GAGTC	5 cut(s)	32, 96, 154, 193, 200
PpsI	GAGTC	5 cut(s)	32, 96, 154, 193, 200
PpuMI	RGGWCCY	1 cut(s)	229
Psp124BI	GAGCTC	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	229
PspN4I	GGNNCC	4 cut(s)	112, 230, 231, 274
PspOMI	GGGCCC	2 cut(s)	110, 272
PspPI	GGNCC	6 cut(s)	110, 111, 229, 263, 272, 273
PspPPI	RGGWCCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	47
RsaI	GTAC	2 cut(s)	117, 182
RsaNI	GTAC	2 cut(s)	116, 181
SacI	GAGCTC	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	281
Sau96I	GGNCC	6 cut(s)	110, 111, 229, 263, 272, 273
SchI	GAGTC	5 cut(s)	32, 97, 154, 194, 200
SduI	GDGCHC	4 cut(s)	63, 114, 153, 276
SetI	ASST	4 cut(s)	24, 48, 71, 153
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	2 cut(s)	105, 287
SsiI	CCGC	5 cut(s)	25, 64, 75, 96, 233
SstI	GAGCTC	1 cut(s)	153
TaqI	TCGA	3 cut(s)	36, 138, 204
TasI	AATT	2 cut(s)	105, 287
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	227
Tth111I	GACNNNGTC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.