Rmu_sc0002014.1_g000047

Pentatricopeptide repeat-containing protein At5g18390

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002014.1
Physical Location & Seq
Reverse (-)
176818 .. 178224
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002014.1_g000047.1.cds

Sequence Viewer

Length: 1407 bp
atgctcaggtccttcgccaaaagttccctccacctctatctccaccaaaaccaaaaccaaaaccccaaaaccctccacctcctcctcctcctccgccacctcaccaccctcaatgccttccctccccaaaaccccgccgtggcccccaccaaagacgactacttctccgccatccaccacatcaccaacatcgtccgccgcgaccacttcatggagcgcaccctcaacaagctccgcatctccgtcgactccgacctcgtcttccgcgtcctccgcgcctgctccgcctccgccaccgagtccctccgcttcttcaattgggcccgcacccaccaccccacctacggccccaccaccctcgaaaccgaagagctcgtcaagaccctcgcccgctccaaaaaatacgagtccatgtggaaaatcctcgactccatgaaaacccaccacggtttaacactctcccaggacaccctttgcttcattatccaagagtacggcaagcacggcctgatcgaccaggccgttgagctcttcaatcgagctcccaagacctttaactgcttgcagtcggtggaagttcacaacgctctgctcttctctctctgccagactaagctctttcacggcgcttatgccttggtgaggaggctgattcggaaagggatcgttccgaataagatgacgtattccattttggtcaatgcttggtgttctaatgggaagatgaaggaggcgcagctgttcttggaggagatgagtgagaaggggtttaatccgccggttcgaggccgtgatctgctggttgaggggttgctcaatgctggttatattgaggctgccaaagacatggtaaggaaaatggtcaaggaaaactgtgtgcctgatgtttctacttttaatgcattgttagaagctatttgtaagtctggggaggttgagttttgcattggtctttattgggaggcaactggattggggctttgtcctgatattaatacttataaagtgttgataccggcggtttcgaaggttgggaggatggatgatgcatttaggcttttgcataatgcgattgaggacgggcacaggccgtttccgggcttgtatgcccctattgttaaggggatgtgtaggaatggtcagtttgatgatgcattttgtttctttagtgagatgaaggtcaagggtcatcctccgaatcggccggtatataccatgttgataactatggctggacgtggaggccggtttgttgaggctgcgaattacttgatggagatgactgagttggggttgatgccgatttcacggtgctttgatttggtcacggatggattgaagaatagtgggaagcatgatctggctaagagaattgagcaattggaagtttctcttaggggtacatga

Protein Analysis

468

Amino Acids

53.04

Weight (kDa)

8.94

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1002
AccB7I CCANNNNNTGG 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 393
AccI GTMKAC 1 cut(s) 246
AccII CGCG 3 cut(s) 201, 267, 276
AclWI GGATC 1 cut(s) 671
AcoI YGGCCR 1 cut(s) 1202
AfaI GTAC 2 cut(s) 494, 1402
AfiI CCNNNNNNNGG 6 cut(s) 139, 211, 344, 642, 785, 1097
AgsI TTSAA 3 cut(s) 316, 535, 1339
AjiI CACGTC 1 cut(s) 1238
AjnI CCWGG 2 cut(s) 462, 516
AluBI AGCT 7 cut(s) 232, 373, 529, 542, 616, 739, 914
AluI AGCT 7 cut(s) 232, 373, 529, 542, 616, 739, 914
Alw21I GWGCWC 3 cut(s) 375, 531, 544
AlwI GGATC 1 cut(s) 671
AoxI GGCC 9 cut(s) 141, 321, 346, 505, 519, 787, 1088, 1202, 1243
ApaI GGGCCC 1 cut(s) 325
ApeKI GCWGC 3 cut(s) 736, 836, 1259
ArsI GACNNNNNNTTYG 2 cut(s) 360, 392
AseI ATTAAT 1 cut(s) 993
AspLEI GCGC 4 cut(s) 219, 278, 629, 736
AspS9I GGNCC 5 cut(s) 9, 142, 321, 322, 347
AsuC2I CCSGG 1 cut(s) 1098
AsuHPI GGTGA 3 cut(s) 94, 175, 652
AsuII TTCGAA 1 cut(s) 1025
AvaII GGWCC 1 cut(s) 9
BaeGI GKGCMC 2 cut(s) 325, 1086
BanII GRGCYC 4 cut(s) 325, 375, 531, 544
BbsI GAAGAC 1 cut(s) 253
Bbv12I GWGCWC 3 cut(s) 375, 531, 544
BbvI GCAGC 3 cut(s) 748, 823, 1246
BccI CCATC 4 cut(s) 179, 1033, 1267, 1325
BceAI ACGGC 8 cut(s) 122, 361, 506, 511, 520, 640, 774, 1075
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 2 cut(s) 464, 518
BcnI CCSGG 1 cut(s) 1098
BfoI RGCGCY 1 cut(s) 630
BisI GCNGC 4 cut(s) 199, 737, 837, 1260
BlsI GCNGC 4 cut(s) 200, 738, 838, 1261
Bme1390I CCNGG 3 cut(s) 464, 518, 1098
Bme18I GGWCC 1 cut(s) 9
BmgBI CACGTC 1 cut(s) 1238
BmgT120I GGNCC 5 cut(s) 9, 142, 321, 322, 347
BmiI GGNNCC 3 cut(s) 144, 323, 349
BmrFI CCNGG 3 cut(s) 464, 518, 1098
BmsI GCATC 4 cut(s) 246, 1036, 1141, 1287
BpiI GAAGAC 1 cut(s) 253
Bpu10I CCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 1025
BpuMI CCSGG 1 cut(s) 1098
BsaJI CCNNGG 4 cut(s) 138, 445, 462, 636
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 923, 953
Bsc4I CCNNNNNNNGG 6 cut(s) 139, 211, 344, 642, 785, 1097
Bse118I RCCGGY 4 cut(s) 778, 1015, 1204, 1245
Bse1I ACTGG 1 cut(s) 973
BseBI CCWGG 2 cut(s) 464, 518
BseDI CCNNGG 4 cut(s) 138, 445, 462, 636
BseGI GGATG 6 cut(s) 171, 1044, 1048, 1131, 1189, 1336
BseLI CCNNNNNNNGG 6 cut(s) 139, 211, 344, 642, 785, 1097
BseMII CTCAG 2 cut(s) 19, 1275
BseNI ACTGG 1 cut(s) 973
BseRI GAGGAG 6 cut(s) 71, 74, 77, 80, 658, 764
BseSI GKGCMC 2 cut(s) 325, 1086
BseX3I CGGCCG 1 cut(s) 1202
BseXI GCAGC 3 cut(s) 748, 823, 1246
Bsh1236I CGCG 3 cut(s) 201, 267, 276
Bsh1285I CGRYCG 1 cut(s) 1205
BshFI GGCC 9 cut(s) 143, 323, 348, 507, 521, 789, 1090, 1204, 1245
BsiEI CGRYCG 1 cut(s) 1205
BsiHKAI GWGCWC 3 cut(s) 375, 531, 544
BsiSI CCGG 5 cut(s) 779, 1016, 1097, 1205, 1246
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 6 cut(s) 139, 211, 344, 642, 785, 1097
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 9 cut(s) 143, 323, 348, 507, 521, 789, 1090, 1204, 1245
Bsp119I TTCGAA 1 cut(s) 1025
Bsp120I GGGCCC 1 cut(s) 321
Bsp1286I GDGCHC 5 cut(s) 325, 375, 531, 544, 1086
Bsp143I GATC 4 cut(s) 510, 663, 793, 1357
BspANI GGCC 9 cut(s) 143, 323, 348, 507, 521, 789, 1090, 1204, 1245
BspCNI CTCAG 2 cut(s) 18, 1276
BspFNI CGCG 3 cut(s) 201, 267, 276
BspLI GGNNCC 3 cut(s) 144, 323, 349
BspPI GGATC 1 cut(s) 671
BspQI GCTCTTC 3 cut(s) 363, 536, 599
BspT104I TTCGAA 1 cut(s) 1025
BsrBI CCGCTC 1 cut(s) 393
BsrFI RCCGGY 4 cut(s) 778, 1015, 1204, 1245
BsrI ACTGG 1 cut(s) 973
BssAI RCCGGY 4 cut(s) 778, 1015, 1204, 1245
BssECI CCNNGG 4 cut(s) 138, 445, 462, 636
BssMI GATC 4 cut(s) 510, 663, 793, 1357
BssT1I CCWWGG 1 cut(s) 636
Bst2UI CCWGG 2 cut(s) 464, 518
Bst4CI ACNGT 3 cut(s) 449, 875, 1311
Bst6I CTCTTC 3 cut(s) 363, 536, 599
BstBI TTCGAA 1 cut(s) 1025
BstC8I GCNNGC 5 cut(s) 280, 325, 391, 500, 563
BstDEI CTNAG 5 cut(s) 5, 612, 1284, 1365, 1394
BstDSI CCRYGG 2 cut(s) 138, 445
BstENI CCTNNNNNAGG 1 cut(s) 640
BstF5I GGATG 6 cut(s) 171, 1044, 1048, 1131, 1189, 1336
BstFNI CGCG 3 cut(s) 201, 267, 276
BstH2I RGCGCY 1 cut(s) 630
BstHHI GCGC 4 cut(s) 219, 278, 629, 736
BstKTI GATC 4 cut(s) 513, 666, 796, 1360
BstMBI GATC 4 cut(s) 510, 663, 793, 1357
BstMCI CGRYCG 1 cut(s) 1205
BstMWI GCNNNNNNNGC 3 cut(s) 273, 284, 504
BstNI CCWGG 2 cut(s) 464, 518
BstSCI CCNGG 3 cut(s) 462, 516, 1096
BstSLI GKGCMC 2 cut(s) 325, 1086
BstUI CGCG 3 cut(s) 201, 267, 276
BstV1I GCAGC 3 cut(s) 748, 823, 1246
BstV2I GAAGAC 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 847
BstZI CGGCCG 1 cut(s) 1202
BsuRI GGCC 9 cut(s) 143, 323, 348, 507, 521, 789, 1090, 1204, 1245
BtgI CCRYGG 2 cut(s) 138, 445
BtrI CACGTC 1 cut(s) 1238
BtsCI GGATG 6 cut(s) 171, 1044, 1048, 1131, 1189, 1336
Cac8I GCNNGC 5 cut(s) 280, 325, 391, 500, 563
CfoI GCGC 4 cut(s) 219, 278, 629, 736
Cfr10I RCCGGY 4 cut(s) 778, 1015, 1204, 1245
Cfr13I GGNCC 5 cut(s) 9, 142, 321, 322, 347
CseI GACGC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 493, 1401
CviAII CATG 7 cut(s) 211, 412, 433, 847, 1216, 1355, 1404
CviQI GTAC 2 cut(s) 493, 1401
DdeI CTNAG 5 cut(s) 5, 612, 1284, 1365, 1394
DpnI GATC 4 cut(s) 512, 665, 795, 1359
DpnII GATC 4 cut(s) 510, 663, 793, 1357
EaeI YGGCCR 1 cut(s) 1202
EagI CGGCCG 1 cut(s) 1202
Eam1104I CTCTTC 3 cut(s) 363, 536, 599
EarI CTCTTC 3 cut(s) 363, 536, 599
EciI GGCGGA 6 cut(s) 83, 157, 185, 274, 280, 765
Ecl136II GAGCTC 3 cut(s) 373, 529, 542
EclXI CGGCCG 1 cut(s) 1202
Eco130I CCWWGG 1 cut(s) 636
Eco24I GRGCYC 4 cut(s) 325, 375, 531, 544
Eco47I GGWCC 1 cut(s) 9
Eco52I CGGCCG 1 cut(s) 1202
Eco53kI GAGCTC 3 cut(s) 373, 529, 542
EcoICRI GAGCTC 3 cut(s) 373, 529, 542
EcoNI CCTNNNNNAGG 1 cut(s) 640
EcoO109I RGGNCCY 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 462, 516
EcoT14I CCWWGG 1 cut(s) 636
EcoT22I ATGCAT 3 cut(s) 904, 1051, 1156
EcoT38I GRGCYC 4 cut(s) 325, 375, 531, 544
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 7 cut(s) 214, 415, 436, 850, 1219, 1358, 1407
FalI AAGNNNNNCTT 1 cut(s) 1377
FaqI GGGAC 1 cut(s) 286
FatI CATG 7 cut(s) 210, 411, 432, 846, 1215, 1354, 1403
FauI CCCGC 3 cut(s) 142, 332, 398
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 4 cut(s) 199, 737, 837, 1260
FokI GGATG 6 cut(s) 158, 1051, 1055, 1138, 1176, 1343
FriOI GRGCYC 4 cut(s) 325, 375, 531, 544
Fsp4HI GCNGC 4 cut(s) 199, 737, 837, 1260
GlaI GCGC 4 cut(s) 218, 277, 628, 735
GluI GCNGC 4 cut(s) 199, 737, 837, 1260
HaeII RGCGCY 1 cut(s) 630
HaeIII GGCC 9 cut(s) 143, 323, 348, 507, 521, 789, 1090, 1204, 1245
HapII CCGG 5 cut(s) 779, 1016, 1097, 1205, 1246
HgaI GACGC 1 cut(s) 256
HhaI GCGC 4 cut(s) 219, 278, 629, 736
Hin1II CATG 7 cut(s) 214, 415, 436, 850, 1219, 1358, 1407
Hin6I GCGC 4 cut(s) 217, 276, 627, 734
HinP1I GCGC 4 cut(s) 217, 276, 627, 734
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 6 cut(s) 248, 299, 407, 428, 652, 1198
HpaII CCGG 5 cut(s) 779, 1016, 1097, 1205, 1246
HphI GGTGA 3 cut(s) 94, 175, 652
Hpy166II GTNNAC 2 cut(s) 247, 580
Hpy188I TCNGA 4 cut(s) 253, 657, 672, 1197
Hpy188III TCNNGA 2 cut(s) 379, 986
Hpy8I GTNNAC 2 cut(s) 247, 580
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 6 cut(s) 22, 127, 721, 757, 1021, 1171
HpyCH4III ACNGT 3 cut(s) 449, 875, 1311
HpyCH4IV ACGT 2 cut(s) 683, 1237
HpyCH4V TGCA 6 cut(s) 565, 902, 945, 1049, 1063, 1154
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 284, 504
HpyF3I CTNAG 5 cut(s) 5, 612, 1284, 1365, 1394
HpySE526I ACGT 2 cut(s) 683, 1237
Hsp92II CATG 7 cut(s) 214, 415, 436, 850, 1219, 1358, 1407
HspAI GCGC 4 cut(s) 217, 276, 627, 734
Kzo9I GATC 4 cut(s) 510, 663, 793, 1357
LguI GCTCTTC 3 cut(s) 363, 536, 599
LmnI GCTCC 5 cut(s) 214, 237, 287, 398, 547
Lsp1109I GCAGC 3 cut(s) 748, 823, 1246
LweI GCATC 4 cut(s) 246, 1036, 1141, 1287
MaeII ACGT 2 cut(s) 683, 1237
MaeIII GTNAC 1 cut(s) 1324
MalI GATC 4 cut(s) 512, 665, 795, 1359
MbiI CCGCTC 1 cut(s) 393
MboI GATC 4 cut(s) 510, 663, 793, 1357
MboII GAAGA 7 cut(s) 253, 304, 380, 523, 586, 733, 1351
MfeI CAATTG 2 cut(s) 316, 1379
MhlI GDGCHC 5 cut(s) 325, 375, 531, 544, 1086
MluCI AATT 4 cut(s) 316, 1264, 1371, 1379
MlyI GAGTC 4 cut(s) 242, 308, 416, 422
MmeI TCCRAC 1 cut(s) 276
Mph1103I ATGCAT 3 cut(s) 904, 1051, 1156
MseI TTAA 6 cut(s) 452, 555, 771, 897, 993, 1119
MspA1I CMGCKG 1 cut(s) 739
MspI CCGG 5 cut(s) 779, 1016, 1097, 1205, 1246
MspR9I CCNGG 3 cut(s) 464, 518, 1098
MunI CAATTG 2 cut(s) 316, 1379
MvaI CCWGG 2 cut(s) 464, 518
MvnI CGCG 3 cut(s) 201, 267, 276
MwoI GCNNNNNNNGC 3 cut(s) 273, 284, 504
NciI CCSGG 1 cut(s) 1098
NdeII GATC 4 cut(s) 510, 663, 793, 1357
NlaIII CATG 7 cut(s) 214, 415, 436, 850, 1219, 1358, 1407
NlaIV GGNNCC 3 cut(s) 144, 323, 349
NmuCI GTSAC 1 cut(s) 1324
NsiI ATGCAT 3 cut(s) 904, 1051, 1156
NspV TTCGAA 1 cut(s) 1025
PciSI GCTCTTC 3 cut(s) 363, 536, 599
PcsI WCGNNNNNNNCGW 4 cut(s) 198, 264, 510, 519
PfeI GAWTC 2 cut(s) 652, 1198
PflFI GACNNNGTC 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 4 cut(s) 200, 738, 838, 1261
PleI GAGTC 4 cut(s) 242, 307, 415, 422
PpsI GAGTC 4 cut(s) 242, 307, 415, 422
PpuMI RGGWCCY 1 cut(s) 9
PshBI ATTAAT 1 cut(s) 993
PsiI TTATAA 1 cut(s) 1002
Psp124BI GAGCTC 3 cut(s) 375, 531, 544
Psp5II RGGWCCY 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 462, 516
PspGI CCWGG 2 cut(s) 462, 516
PspN4I GGNNCC 3 cut(s) 144, 323, 349
PspOMI GGGCCC 1 cut(s) 321
PspPI GGNCC 5 cut(s) 9, 142, 321, 322, 347
PspPPI RGGWCCY 1 cut(s) 9
PsyI GACNNNGTC 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 739
RsaI GTAC 2 cut(s) 494, 1402
RsaNI GTAC 2 cut(s) 493, 1401
SacI GAGCTC 3 cut(s) 375, 531, 544
SalI GTCGAC 1 cut(s) 245
SapI GCTCTTC 3 cut(s) 363, 536, 599
SaqAI TTAA 6 cut(s) 452, 555, 771, 897, 993, 1119
SatI GCNGC 4 cut(s) 199, 737, 837, 1260
Sau3AI GATC 4 cut(s) 510, 663, 793, 1357
Sau96I GGNCC 5 cut(s) 9, 142, 321, 322, 347
SchI GAGTC 4 cut(s) 242, 308, 416, 422
ScrFI CCNGG 3 cut(s) 464, 518, 1098
SduI GDGCHC 5 cut(s) 325, 375, 531, 544, 1086
SfaNI GCATC 4 cut(s) 246, 1036, 1141, 1287
SfuI TTCGAA 1 cut(s) 1025
SinI GGWCC 1 cut(s) 9
Sse9I AATT 4 cut(s) 316, 1264, 1371, 1379
SstI GAGCTC 3 cut(s) 375, 531, 544
StyD4I CCNGG 3 cut(s) 462, 516, 1096
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 3 cut(s) 449, 875, 1311
TaiI ACGT 2 cut(s) 686, 1240
TaqI TCGA 7 cut(s) 246, 360, 426, 513, 538, 784, 1025
TasI AATT 4 cut(s) 316, 1264, 1371, 1379
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 2 cut(s) 652, 1198
Tru1I TTAA 6 cut(s) 452, 555, 771, 897, 993, 1119
Tru9I TTAA 6 cut(s) 452, 555, 771, 897, 993, 1119
TseFI GTSAC 1 cut(s) 1324
TseI GCWGC 3 cut(s) 736, 836, 1259
Tsp45I GTSAC 1 cut(s) 1324
TspDTI ATGAA 5 cut(s) 199, 449, 469, 740, 1190
TspGWI ACGGA 2 cut(s) 232, 1343
Tth111I GACNNNGTC 1 cut(s) 257
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 9
VspI ATTAAT 1 cut(s) 993
XagI CCTNNNNNAGG 1 cut(s) 640
XmiI GTMKAC 1 cut(s) 246
Zsp2I ATGCAT 3 cut(s) 904, 1051, 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.