Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005891

Physical Location & Seq

Genomic Coordinates Reverse (-)

16083252 .. 16083980

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACGTATTCCATTTTGGTCAATGCTTGGTGTTCTAATGGGAAGATGAAAGAGGCGCAGCTGTTCTTGGAGGAGATGAGTGAGAAGGGGTTTAATCCGCCGGTTCGCGGCCGTGATCTGCTGGTTGAGGGGTTGCTCAATGCTGGTTATATTGAGGCTGCCAAAGATATGGTGAGGAAAATGGTGAAGGAAAACTGTGTACTTGATGTTTCTACTTTTAATGCATTGCTAGAAGCTATTTGTAAGTCTGGGGAGGTTGAGTTTTGCATTGGTCTTTATTGGGAGGCAACTGGATTGGGGCTTTGTCCTGATATTAATACTTATAAAGTGTTGATACCGGTGGTTTCGAAGGTTGGGAGGATGGTTGATGCATTTAGGCTTTTGCATAATGCGATTGAGGATGGGCACAGGCCATTTCCGGGCTTGTATGCCCCCATTGTTAAGGGGATGTGTAGGAATGGTCAGTTTGATGATGCATTTTGTTTCTTTAGTGAGATGAAGGTCAAGGGTCATCCTCCGAATCGGCCGGTATACACCATGTTGATAACTATGGCTGGACGTGGAGGCCGGTTTGTTGAGGCTGCGAATTACTTGATGGAGATGACTGATTTAGGGTTGATGCCGATTTCGCGCTGCTTTGATTTGGTTACGGATGGGTTGAAGAATAGTGGGAAGCATGATTTGGCTAAGAGAATTGAGCAATTGGAAGTTTCTCTTAGGGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

242

Amino Acids

26.97

Weight (kDa)

6.44

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	2 - 27	2.1e-07	PPR repeat
PPR	PF01535	2 - 31	3.1e-06	PPR repeat
TPR_24	PF23276	3 - 94	1.4e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	41 - 82	8.5e-07	PPR repeat family
PPR_2	PF13041	69 - 112	3.1e-06	PPR repeat family
PPR_2	PF13041	146 - 183	1.2e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18390
fragaria_vesca	FvH4_4g11972
malus_domestica	MD04G1235400.v1.1
prunus_persica	Prupe.6G355300_v2.0.a1
pyrus_communis	pycom04g20890
rosa_chinensis	RchiOBHm_Chr7g0230951
rosa_laevigata	RLG00000001439 RLG00000002174 RLG00000002176
rosa_multiflora	Rmu_sc0000453.1_g000016 Rmu_sc0000453.1_g000017 Rmu_sc0002014.1_g000047
rosa_roxburghii	Rroxscaffold_3G00229640 Rroxscaffold_3G00238690 Rroxscaffold_3G00238710 Rroxscaffold_3G00238720 Rroxscaffold_3G00238730
rosa_rugosa	Rorug07G0263500
rosa_samantha	Rh7AG416900 Rh7AG417000 Rh7BG392800 Rh7BG392900 Rh7CG436000 Rh7CG436100 Rh7DG411100 Rh7DG411200
rosa_wichuraiana	Rw1G007620 Rw7G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	531
AccII	CGCG	2 cut(s)	108, 631
AciI	CCGC	2 cut(s)	98, 108
AcoI	YGGCCR	2 cut(s)	109, 524
AfaI	GTAC	2 cut(s)	201, 724
AfiI	CCNNNNNNNGG	2 cut(s)	107, 419
AgeI	ACCGGT	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	661
AjiI	CACGTC	1 cut(s)	560
AjuI	GAANNNNNNNTTGG	2 cut(s)	665, 697
AluBI	AGCT	2 cut(s)	61, 236
AluI	AGCT	2 cut(s)	61, 236
AoxI	GGCC	4 cut(s)	109, 410, 524, 565
ApeKI	GCWGC	4 cut(s)	58, 158, 581, 633
AseI	ATTAAT	1 cut(s)	315
AsiGI	ACCGGT	1 cut(s)	337
AspLEI	GCGC	2 cut(s)	58, 633
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	2 cut(s)	184, 196
AsuII	TTCGAA	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	70, 145, 568, 620
BccI	CCATC	4 cut(s)	355, 395, 589, 647
BceAI	ACGGC	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	420
BfaI	CTAG	1 cut(s)	230
BisI	GCNGC	5 cut(s)	59, 109, 159, 582, 634
BlsI	GCNGC	5 cut(s)	60, 110, 160, 583, 635
Bme1390I	CCNGG	1 cut(s)	420
BmgBI	CACGTC	1 cut(s)	560
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	3 cut(s)	358, 463, 609
Bpu14I	TTCGAA	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	420
BsaWI	WCCGGW	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 419
Bse118I	RCCGGY	4 cut(s)	100, 337, 526, 567
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	224
BseGI	GGATG	5 cut(s)	366, 406, 453, 511, 658
BseLI	CCNNNNNNNGG	2 cut(s)	107, 419
BseMI	GCAATG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	408
BseX3I	CGGCCG	2 cut(s)	109, 524
BseXI	GCAGC	4 cut(s)	70, 145, 568, 620
Bsh1236I	CGCG	2 cut(s)	108, 631
Bsh1285I	CGRYCG	2 cut(s)	112, 527
BshFI	GGCC	4 cut(s)	111, 412, 526, 567
BshTI	ACCGGT	1 cut(s)	337
BsiEI	CGRYCG	2 cut(s)	112, 527
BsiSI	CCGG	5 cut(s)	101, 338, 419, 527, 568
BslI	CCNNNNNNNGG	2 cut(s)	107, 419
BsnI	GGCC	4 cut(s)	111, 412, 526, 567
Bsp119I	TTCGAA	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	2 cut(s)	98, 108
BspANI	GGCC	4 cut(s)	111, 412, 526, 567
BspFNI	CGCG	2 cut(s)	108, 631
BspT104I	TTCGAA	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	224
BsrFI	RCCGGY	4 cut(s)	100, 337, 526, 567
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	4 cut(s)	100, 337, 526, 567
BssMI	GATC	1 cut(s)	115
BssNAI	GTATAC	1 cut(s)	532
Bst1107I	GTATAC	1 cut(s)	532
Bst4CI	ACNGT	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	347
BstDEI	CTNAG	2 cut(s)	687, 716
BstF5I	GGATG	5 cut(s)	366, 406, 453, 511, 658
BstFNI	CGCG	2 cut(s)	108, 631
BstHHI	GCGC	2 cut(s)	58, 633
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMCI	CGRYCG	2 cut(s)	112, 527
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstSCI	CCNGG	1 cut(s)	418
BstSLI	GKGCMC	1 cut(s)	408
BstUI	CGCG	2 cut(s)	108, 631
BstV1I	GCAGC	4 cut(s)	70, 145, 568, 620
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstZ17I	GTATAC	1 cut(s)	532
BstZI	CGGCCG	2 cut(s)	109, 524
BsuRI	GGCC	4 cut(s)	111, 412, 526, 567
BtrI	CACGTC	1 cut(s)	560
BtsCI	GGATG	5 cut(s)	366, 406, 453, 511, 658
CfoI	GCGC	2 cut(s)	58, 633
Cfr10I	RCCGGY	4 cut(s)	100, 337, 526, 567
Csp6I	GTAC	2 cut(s)	200, 723
CspAI	ACCGGT	1 cut(s)	337
CviAII	CATG	3 cut(s)	538, 677, 726
CviQI	GTAC	2 cut(s)	200, 723
DdeI	CTNAG	2 cut(s)	687, 716
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	2 cut(s)	109, 524
EagI	CGGCCG	2 cut(s)	109, 524
EciI	GGCGGA	1 cut(s)	87
EclXI	CGGCCG	2 cut(s)	109, 524
Eco52I	CGGCCG	2 cut(s)	109, 524
EcoT22I	ATGCAT	3 cut(s)	226, 373, 478
FaeI	CATG	3 cut(s)	541, 680, 729
FalI	AAGNNNNNCTT	1 cut(s)	699
FatI	CATG	3 cut(s)	537, 676, 725
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	5 cut(s)	59, 109, 159, 582, 634
FokI	GGATG	5 cut(s)	373, 413, 460, 498, 665
Fsp4HI	GCNGC	5 cut(s)	59, 109, 159, 582, 634
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	2 cut(s)	57, 632
GluI	GCNGC	5 cut(s)	59, 109, 159, 582, 634
HaeIII	GGCC	4 cut(s)	111, 412, 526, 567
HapII	CCGG	5 cut(s)	101, 338, 419, 527, 568
HhaI	GCGC	2 cut(s)	58, 633
Hin1II	CATG	3 cut(s)	541, 680, 729
Hin6I	GCGC	2 cut(s)	56, 631
HinP1I	GCGC	2 cut(s)	56, 631
HinfI	GANTC	1 cut(s)	520
HpaII	CCGG	5 cut(s)	101, 338, 419, 527, 568
HphI	GGTGA	2 cut(s)	184, 196
Hpy166II	GTNNAC	2 cut(s)	200, 532
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	2 cut(s)	200, 532
HpyAV	CCTTC	4 cut(s)	79, 181, 343, 493
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	2 cut(s)	5, 559
HpyCH4V	TGCA	5 cut(s)	224, 267, 371, 385, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpyF3I	CTNAG	2 cut(s)	687, 716
HpySE526I	ACGT	2 cut(s)	5, 559
Hsp92II	CATG	3 cut(s)	541, 680, 729
HspAI	GCGC	2 cut(s)	56, 631
Kzo9I	GATC	1 cut(s)	115
Lsp1109I	GCAGC	4 cut(s)	70, 145, 568, 620
LweI	GCATC	3 cut(s)	358, 463, 609
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	2 cut(s)	5, 559
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	55, 673
MfeI	CAATTG	1 cut(s)	701
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	3 cut(s)	586, 693, 701
Mph1103I	ATGCAT	3 cut(s)	226, 373, 478
MseI	TTAA	4 cut(s)	93, 219, 315, 441
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	5 cut(s)	101, 338, 419, 527, 568
MspR9I	CCNGG	1 cut(s)	420
MunI	CAATTG	1 cut(s)	701
MvnI	CGCG	2 cut(s)	108, 631
MwoI	GCNNNNNNNGC	1 cut(s)	628
NciI	CCSGG	1 cut(s)	420
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	541, 680, 729
NsiI	ATGCAT	3 cut(s)	226, 373, 478
NspV	TTCGAA	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	520
PinAI	ACCGGT	1 cut(s)	337
PkrI	GCNGC	5 cut(s)	60, 110, 160, 583, 635
PshBI	ATTAAT	1 cut(s)	315
PsiI	TTATAA	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	2 cut(s)	201, 724
RsaNI	GTAC	2 cut(s)	200, 723
SaqAI	TTAA	4 cut(s)	93, 219, 315, 441
SatI	GCNGC	5 cut(s)	59, 109, 159, 582, 634
Sau3AI	GATC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	7 cut(s)	8, 63, 238, 258, 354, 504, 562
SfaNI	GCATC	3 cut(s)	358, 463, 609
SfuI	TTCGAA	1 cut(s)	347
Sse9I	AATT	3 cut(s)	586, 693, 701
SsiI	CCGC	2 cut(s)	98, 108
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	2 cut(s)	8, 562
TaqI	TCGA	1 cut(s)	347
TasI	AATT	3 cut(s)	586, 693, 701
TatI	WGTACW	1 cut(s)	199
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	520
Tru1I	TTAA	4 cut(s)	93, 219, 315, 441
Tru9I	TTAA	4 cut(s)	93, 219, 315, 441
TseI	GCWGC	4 cut(s)	58, 158, 581, 633
TspDTI	ATGAA	2 cut(s)	62, 512
TspGWI	ACGGA	1 cut(s)	665
VspI	ATTAAT	1 cut(s)	315
XmiI	GTMKAC	1 cut(s)	531
XspI	CTAG	1 cut(s)	230
Zsp2I	ATGCAT	3 cut(s)	226, 373, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.