Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005891

Physical Location & Seq

Genomic Coordinates Reverse (-)

57047875 .. 57048870

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG436100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTGGAAAATCCTCGACTCCATGAAAACCCACCACGGTTTAACACTCTCCCAGGACACCCTTTGCTTCATTATCCAAGAGTACGGCAAGCACGGCCTGATCGACCAGGCCGTTGAGCTCTTCAATCGAGCTCCCAAGACCTTTAACTGCTTGCAGTCGGTGGAAGTTCACAACGCTCTGCTCTTCTCTCTCTGCCAGACTAAGCTCTTTCACGGCGCTTATGCCTTGGTGAGGAGGCTGATTCGAAAAGGGCTCGTTCCGAATAAGATGACGTATTCCATTTTGGTCAATGCTTGGTGTTCTAATGGGAAGATGAAGGAGGCGCAGCTGTTCTTGGAGGAGATGAGTGAGAAGGGGTTTAATCCGCCGGTTCGAGGCCGTGATCTGCTGGTTGAGGGGTTGCTGAATGCTGGTTATATTGAGGCTGCCAAAGATATGGTAAGGAAGATGGTGAAGGAAAACTGTGTGCCTGATGTTTCTACTTTTAATGCATTGTTAGAAGCTATTTGTAAGTCTGGGGAGGTTGAGTTTTGCATTGGTCTTTATTGGGAGGCAACTGGATTGGGGCTTTGTCCTGATATTAATACTTATAAAGTGTTGATACCGGCGGTTTCGAAGGTTGGGAGGATGGATGATGCATTTAGGCTTTTGCATAATGCGATTGAGGACGGGCACAGGCCGTTTCCGGGCTTGTATGCCCCTATTGTTAAGGGGATGTGTAGGAATGGTCAGTTTGATGATGCATTTTGTTTCTTTAGTGAGATGAAGGTCAAGGGTCATCCCCCGAATCGGCCGGTATATACCATGTTGATAACTATGGCTGGACGTGGAGGCCGGTTTGTTGAGGCTGCGAATTACTTGATGGAGATGACTGAGTTGGGGTTGATGCCGATTTCACGGTGCTTTGATTTGGTCACGGATGGATTGAAGAATAGTGGGAAGCATGATCTGGCTAAGAGAATTGAGCAATTGGAAGTTTCTCTTAGGGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

331

Amino Acids

37.15

Weight (kDa)

8.23

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	56 - 100	7.9e-07	PPR repeat family
TPR_24	PF23276	80 - 183	1.5e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	83 - 116	7.7e-11	PPR repeat
PPR	PF01535	91 - 120	4.8e-06	PPR repeat
PPR_3	PF13812	112 - 170	7.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	130 - 171	5.1e-08	PPR repeat family
PPR_2	PF13041	157 - 204	4.2e-07	PPR repeat family
PPR_2	PF13041	235 - 272	1.9e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18390
fragaria_vesca	FvH4_4g11972
malus_domestica	MD04G1235400.v1.1
prunus_persica	Prupe.6G355300_v2.0.a1
pyrus_communis	pycom04g20890
rosa_chinensis	RchiOBHm_Chr7g0230951
rosa_laevigata	RLG00000001439 RLG00000002174 RLG00000002176
rosa_multiflora	Rmu_sc0000453.1_g000016 Rmu_sc0000453.1_g000017 Rmu_sc0002014.1_g000047
rosa_roxburghii	Rroxscaffold_3G00229640 Rroxscaffold_3G00238690 Rroxscaffold_3G00238710 Rroxscaffold_3G00238720 Rroxscaffold_3G00238730
rosa_rugosa	Rorug07G0263500
rosa_samantha	Rh7AG416900 Rh7AG417000 Rh7BG392800 Rh7BG392900 Rh7CG436000 Rh7CG436100 Rh7DG411100 Rh7DG411200
rosa_wichuraiana	Rw1G007620 Rw7G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	591
AciI	CCGC	2 cut(s)	365, 608
AcoI	YGGCCR	1 cut(s)	791
AfaI	GTAC	2 cut(s)	83, 991
AfiI	CCNNNNNNNGG	4 cut(s)	231, 374, 686, 789
AgsI	TTSAA	2 cut(s)	124, 928
AjiI	CACGTC	1 cut(s)	827
AjnI	CCWGG	2 cut(s)	51, 105
AluBI	AGCT	5 cut(s)	118, 131, 205, 328, 503
AluI	AGCT	5 cut(s)	118, 131, 205, 328, 503
Alw21I	GWGCWC	2 cut(s)	120, 133
AoxI	GGCC	6 cut(s)	94, 108, 376, 677, 791, 832
ApeKI	GCWGC	3 cut(s)	325, 425, 848
AseI	ATTAAT	1 cut(s)	582
AspLEI	GCGC	2 cut(s)	218, 325
AsuC2I	CCSGG	1 cut(s)	687
AsuHPI	GGTGA	2 cut(s)	241, 463
AsuII	TTCGAA	2 cut(s)	244, 614
BaeGI	GKGCMC	1 cut(s)	675
BanII	GRGCYC	3 cut(s)	120, 133, 255
Bbv12I	GWGCWC	2 cut(s)	120, 133
BbvI	GCAGC	3 cut(s)	337, 412, 835
BccI	CCATC	4 cut(s)	442, 622, 856, 914
BceAI	ACGGC	6 cut(s)	95, 100, 109, 229, 363, 664
BciT130I	CCWGG	2 cut(s)	53, 107
BcnI	CCSGG	1 cut(s)	687
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	3 cut(s)	326, 426, 849
BlsI	GCNGC	3 cut(s)	327, 427, 850
Bme1390I	CCNGG	3 cut(s)	53, 107, 687
BmgBI	CACGTC	1 cut(s)	827
BmrFI	CCNGG	3 cut(s)	53, 107, 687
BmsI	GCATC	3 cut(s)	625, 730, 876
Bpu14I	TTCGAA	2 cut(s)	244, 614
BpuMI	CCSGG	1 cut(s)	687
BsaJI	CCNNGG	3 cut(s)	34, 51, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	4 cut(s)	231, 374, 686, 789
Bse118I	RCCGGY	4 cut(s)	367, 604, 793, 834
Bse1I	ACTGG	1 cut(s)	562
BseBI	CCWGG	2 cut(s)	53, 107
BseDI	CCNNGG	3 cut(s)	34, 51, 225
BseGI	GGATG	5 cut(s)	633, 637, 720, 778, 925
BseLI	CCNNNNNNNGG	4 cut(s)	231, 374, 686, 789
BseMII	CTCAG	1 cut(s)	864
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	2 cut(s)	247, 353
BseSI	GKGCMC	1 cut(s)	675
BseX3I	CGGCCG	1 cut(s)	791
BseXI	GCAGC	3 cut(s)	337, 412, 835
Bsh1285I	CGRYCG	1 cut(s)	794
BshFI	GGCC	6 cut(s)	96, 110, 378, 679, 793, 834
BsiEI	CGRYCG	1 cut(s)	794
BsiHKAI	GWGCWC	2 cut(s)	120, 133
BsiSI	CCGG	5 cut(s)	368, 605, 686, 794, 835
BslI	CCNNNNNNNGG	4 cut(s)	231, 374, 686, 789
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	6 cut(s)	96, 110, 378, 679, 793, 834
Bsp119I	TTCGAA	2 cut(s)	244, 614
Bsp1286I	GDGCHC	4 cut(s)	120, 133, 255, 675
Bsp143I	GATC	3 cut(s)	99, 382, 946
BspACI	CCGC	2 cut(s)	365, 608
BspANI	GGCC	6 cut(s)	96, 110, 378, 679, 793, 834
BspCNI	CTCAG	1 cut(s)	865
BspQI	GCTCTTC	2 cut(s)	125, 188
BspT104I	TTCGAA	2 cut(s)	244, 614
BsrFI	RCCGGY	4 cut(s)	367, 604, 793, 834
BsrI	ACTGG	1 cut(s)	562
BssAI	RCCGGY	4 cut(s)	367, 604, 793, 834
BssECI	CCNNGG	3 cut(s)	34, 51, 225
BssMI	GATC	3 cut(s)	99, 382, 946
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	53, 107
Bst4CI	ACNGT	3 cut(s)	38, 464, 900
Bst6I	CTCTTC	2 cut(s)	125, 188
BstBI	TTCGAA	2 cut(s)	244, 614
BstC8I	GCNNGC	2 cut(s)	89, 152
BstDEI	CTNAG	4 cut(s)	201, 873, 954, 983
BstDSI	CCRYGG	1 cut(s)	34
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	5 cut(s)	633, 637, 720, 778, 925
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	2 cut(s)	218, 325
BstKTI	GATC	3 cut(s)	102, 385, 949
BstMBI	GATC	3 cut(s)	99, 382, 946
BstMCI	CGRYCG	1 cut(s)	794
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	2 cut(s)	53, 107
BstSCI	CCNGG	3 cut(s)	51, 105, 685
BstSLI	GKGCMC	1 cut(s)	675
BstV1I	GCAGC	3 cut(s)	337, 412, 835
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstZI	CGGCCG	1 cut(s)	791
BsuRI	GGCC	6 cut(s)	96, 110, 378, 679, 793, 834
BtgI	CCRYGG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	827
BtsCI	GGATG	5 cut(s)	633, 637, 720, 778, 925
Cac8I	GCNNGC	2 cut(s)	89, 152
CfoI	GCGC	2 cut(s)	218, 325
Cfr10I	RCCGGY	4 cut(s)	367, 604, 793, 834
Csp6I	GTAC	2 cut(s)	82, 990
CviAII	CATG	4 cut(s)	22, 805, 944, 993
CviQI	GTAC	2 cut(s)	82, 990
DdeI	CTNAG	4 cut(s)	201, 873, 954, 983
DpnI	GATC	3 cut(s)	101, 384, 948
DpnII	GATC	3 cut(s)	99, 382, 946
EaeI	YGGCCR	1 cut(s)	791
EagI	CGGCCG	1 cut(s)	791
Eam1104I	CTCTTC	2 cut(s)	125, 188
EarI	CTCTTC	2 cut(s)	125, 188
EciI	GGCGGA	1 cut(s)	354
Ecl136II	GAGCTC	2 cut(s)	118, 131
EclXI	CGGCCG	1 cut(s)	791
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	3 cut(s)	120, 133, 255
Eco52I	CGGCCG	1 cut(s)	791
Eco53kI	GAGCTC	2 cut(s)	118, 131
EcoICRI	GAGCTC	2 cut(s)	118, 131
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	51, 105
EcoT14I	CCWWGG	1 cut(s)	225
EcoT22I	ATGCAT	3 cut(s)	493, 640, 745
EcoT38I	GRGCYC	3 cut(s)	120, 133, 255
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	4 cut(s)	25, 808, 947, 996
FalI	AAGNNNNNCTT	1 cut(s)	966
FatI	CATG	4 cut(s)	21, 804, 943, 992
Fnu4HI	GCNGC	3 cut(s)	326, 426, 849
FokI	GGATG	5 cut(s)	640, 644, 727, 765, 932
FriOI	GRGCYC	3 cut(s)	120, 133, 255
Fsp4HI	GCNGC	3 cut(s)	326, 426, 849
GlaI	GCGC	2 cut(s)	217, 324
GluI	GCNGC	3 cut(s)	326, 426, 849
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	6 cut(s)	96, 110, 378, 679, 793, 834
HapII	CCGG	5 cut(s)	368, 605, 686, 794, 835
HhaI	GCGC	2 cut(s)	218, 325
Hin1II	CATG	4 cut(s)	25, 808, 947, 996
Hin6I	GCGC	2 cut(s)	216, 323
HinP1I	GCGC	2 cut(s)	216, 323
HinfI	GANTC	3 cut(s)	17, 241, 787
HpaII	CCGG	5 cut(s)	368, 605, 686, 794, 835
HphI	GGTGA	2 cut(s)	241, 463
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	1 cut(s)	575
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	5 cut(s)	310, 346, 448, 610, 760
HpyCH4III	ACNGT	3 cut(s)	38, 464, 900
HpyCH4IV	ACGT	2 cut(s)	272, 826
HpyCH4V	TGCA	6 cut(s)	154, 491, 534, 638, 652, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	4 cut(s)	201, 873, 954, 983
HpySE526I	ACGT	2 cut(s)	272, 826
Hsp92II	CATG	4 cut(s)	25, 808, 947, 996
HspAI	GCGC	2 cut(s)	216, 323
Kzo9I	GATC	3 cut(s)	99, 382, 946
LguI	GCTCTTC	2 cut(s)	125, 188
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	3 cut(s)	337, 412, 835
LweI	GCATC	3 cut(s)	625, 730, 876
MaeII	ACGT	2 cut(s)	272, 826
MaeIII	GTNAC	1 cut(s)	913
MalI	GATC	3 cut(s)	101, 384, 948
MboI	GATC	3 cut(s)	99, 382, 946
MboII	GAAGA	5 cut(s)	112, 175, 322, 457, 940
MfeI	CAATTG	1 cut(s)	968
MhlI	GDGCHC	4 cut(s)	120, 133, 255, 675
MluCI	AATT	3 cut(s)	853, 960, 968
MlyI	GAGTC	1 cut(s)	11
Mph1103I	ATGCAT	3 cut(s)	493, 640, 745
MseI	TTAA	6 cut(s)	41, 144, 360, 486, 582, 708
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	5 cut(s)	368, 605, 686, 794, 835
MspR9I	CCNGG	3 cut(s)	53, 107, 687
MunI	CAATTG	1 cut(s)	968
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	2 cut(s)	53, 107
MwoI	GCNNNNNNNGC	1 cut(s)	93
NciI	CCSGG	1 cut(s)	687
NdeII	GATC	3 cut(s)	99, 382, 946
NlaIII	CATG	4 cut(s)	25, 808, 947, 996
NmuCI	GTSAC	1 cut(s)	913
NsiI	ATGCAT	3 cut(s)	493, 640, 745
NspV	TTCGAA	2 cut(s)	244, 614
PciSI	GCTCTTC	2 cut(s)	125, 188
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 108
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	241, 787
PkrI	GCNGC	3 cut(s)	327, 427, 850
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PshBI	ATTAAT	1 cut(s)	582
PsiI	TTATAA	1 cut(s)	591
Psp124BI	GAGCTC	2 cut(s)	120, 133
Psp6I	CCWGG	2 cut(s)	51, 105
PspGI	CCWGG	2 cut(s)	51, 105
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	2 cut(s)	83, 991
RsaNI	GTAC	2 cut(s)	82, 990
SacI	GAGCTC	2 cut(s)	120, 133
SapI	GCTCTTC	2 cut(s)	125, 188
SaqAI	TTAA	6 cut(s)	41, 144, 360, 486, 582, 708
SatI	GCNGC	3 cut(s)	326, 426, 849
Sau3AI	GATC	3 cut(s)	99, 382, 946
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	3 cut(s)	53, 107, 687
SduI	GDGCHC	4 cut(s)	120, 133, 255, 675
SfaNI	GCATC	3 cut(s)	625, 730, 876
SfuI	TTCGAA	2 cut(s)	244, 614
Sse9I	AATT	3 cut(s)	853, 960, 968
SsiI	CCGC	2 cut(s)	365, 608
SstI	GAGCTC	2 cut(s)	120, 133
StyD4I	CCNGG	3 cut(s)	51, 105, 685
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	3 cut(s)	38, 464, 900
TaiI	ACGT	2 cut(s)	275, 829
TaqI	TCGA	6 cut(s)	15, 102, 127, 244, 373, 614
TasI	AATT	3 cut(s)	853, 960, 968
TfiI	GAWTC	2 cut(s)	241, 787
Tru1I	TTAA	6 cut(s)	41, 144, 360, 486, 582, 708
Tru9I	TTAA	6 cut(s)	41, 144, 360, 486, 582, 708
TseFI	GTSAC	1 cut(s)	913
TseI	GCWGC	3 cut(s)	325, 425, 848
Tsp45I	GTSAC	1 cut(s)	913
TspDTI	ATGAA	4 cut(s)	38, 58, 329, 779
TspGWI	ACGGA	1 cut(s)	932
VspI	ATTAAT	1 cut(s)	582
XagI	CCTNNNNNAGG	1 cut(s)	229
Zsp2I	ATGCAT	3 cut(s)	493, 640, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.