Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000453.1

Orthogroup ID

OG0005891

Physical Location & Seq

Genomic Coordinates Forward (+)

49893 .. 50270

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000453.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgggtgtaattatatacaagaaaattcattctcttaatactgtcttatttgactccgagtccctccgcttcttcaattgggctcgcacccaccaccccacctaccaccccaccaccctcgaaactgaagagctcgtcaagactctcgcccgctccaaaaagtacgactccatgtggaaaatcctcgactccatgaaaacccatcacagtctaacactctcccaggacaccctttgcttcattatccaagagtatggcaagcacggtctgatcgaccaggccgttgagctcccaagacctttaactgcttgcagtccgtggaagttcacaatgctttgctcttctgtaagtacttggacaactcccttcaacacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

125

Amino Acids

14.52

Weight (kDa)

8.47

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18390
fragaria_vesca	FvH4_4g11972
malus_domestica	MD04G1235400.v1.1
prunus_persica	Prupe.6G355300_v2.0.a1
pyrus_communis	pycom04g20890
rosa_chinensis	RchiOBHm_Chr7g0230951
rosa_laevigata	RLG00000001439 RLG00000002174 RLG00000002176
rosa_multiflora	Rmu_sc0000453.1_g000016 Rmu_sc0000453.1_g000017 Rmu_sc0002014.1_g000047
rosa_roxburghii	Rroxscaffold_3G00229640 Rroxscaffold_3G00238690 Rroxscaffold_3G00238710 Rroxscaffold_3G00238720 Rroxscaffold_3G00238730
rosa_rugosa	Rorug07G0263500
rosa_samantha	Rh7AG416900 Rh7AG417000 Rh7BG392800 Rh7BG392900 Rh7CG436000 Rh7CG436100 Rh7DG411100 Rh7DG411200
rosa_wichuraiana	Rw1G007620 Rw7G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	153
AciI	CCGC	2 cut(s)	67, 151
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	2 cut(s)	164, 352
AgsI	TTSAA	2 cut(s)	76, 370
AhdI	GACNNNNNGTC	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	222, 276
AluBI	AGCT	2 cut(s)	133, 289
AluI	AGCT	2 cut(s)	133, 289
Alw21I	GWGCWC	2 cut(s)	135, 291
AoxI	GGCC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	24
BanII	GRGCYC	3 cut(s)	85, 135, 291
Bbv12I	GWGCWC	2 cut(s)	135, 291
BccI	CCATC	1 cut(s)	210
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	2 cut(s)	224, 278
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	2 cut(s)	224, 278
BmeRI	GACNNNNNGTC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	224, 278
BsaJI	CCNNGG	2 cut(s)	222, 317
BseBI	CCWGG	2 cut(s)	224, 278
BseDI	CCNNGG	2 cut(s)	222, 317
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	2 cut(s)	135, 291
BslFI	GGGAC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	281
Bsp1286I	GDGCHC	3 cut(s)	85, 135, 291
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	2 cut(s)	67, 151
BspANI	GGCC	1 cut(s)	281
BspQI	GCTCTTC	2 cut(s)	123, 346
BsrBI	CCGCTC	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	222, 317
BssMI	GATC	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	224, 278
Bst4CI	ACNGT	3 cut(s)	43, 209, 266
Bst6I	CTCTTC	2 cut(s)	123, 346
BstC8I	GCNNGC	4 cut(s)	85, 151, 260, 310
BstDSI	CCRYGG	1 cut(s)	317
BstKTI	GATC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	270
BstNI	CCWGG	2 cut(s)	224, 278
BstSCI	CCNGG	2 cut(s)	222, 276
BstXI	CCANNNNNNTGG	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	317
Cac8I	GCNNGC	4 cut(s)	85, 151, 260, 310
Csp6I	GTAC	2 cut(s)	163, 351
CviAII	CATG	3 cut(s)	172, 193, 375
CviJI	RGCY	4 cut(s)	83, 133, 281, 289
CviKI_1	RGCY	4 cut(s)	83, 133, 281, 289
CviQI	GTAC	2 cut(s)	163, 351
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
DriI	GACNNNNNGTC	1 cut(s)	58
Eam1104I	CTCTTC	2 cut(s)	123, 346
Eam1105I	GACNNNNNGTC	1 cut(s)	58
EarI	CTCTTC	2 cut(s)	123, 346
Ecl136II	GAGCTC	2 cut(s)	133, 289
Eco24I	GRGCYC	3 cut(s)	85, 135, 291
Eco53kI	GAGCTC	2 cut(s)	133, 289
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	2 cut(s)	133, 289
EcoRII	CCWGG	2 cut(s)	222, 276
EcoT38I	GRGCYC	3 cut(s)	85, 135, 291
FaeI	CATG	3 cut(s)	175, 196, 378
FaiI	YATR	6 cut(s)	14, 16, 173, 194, 255, 376
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	3 cut(s)	171, 192, 374
FauI	CCCGC	1 cut(s)	158
FriOI	GRGCYC	3 cut(s)	85, 135, 291
HaeIII	GGCC	1 cut(s)	281
Hin1II	CATG	3 cut(s)	175, 196, 378
HinfI	GANTC	5 cut(s)	53, 59, 142, 167, 188
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	58, 270
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	3 cut(s)	43, 209, 266
HpyCH4V	TGCA	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	175, 196, 378
Kzo9I	GATC	1 cut(s)	270
LguI	GCTCTTC	2 cut(s)	123, 346
LmnI	GCTCC	2 cut(s)	158, 294
LpnPI	CCDG	4 cut(s)	209, 236, 263, 290
MalI	GATC	1 cut(s)	272
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	1 cut(s)	270
MboII	GAAGA	3 cut(s)	64, 140, 333
MfeI	CAATTG	1 cut(s)	76
MhlI	GDGCHC	3 cut(s)	85, 135, 291
MluCI	AATT	3 cut(s)	9, 24, 76
MlyI	GAGTC	5 cut(s)	47, 68, 136, 161, 182
MnlI	CCTC	3 cut(s)	74, 128, 194
MseI	TTAA	2 cut(s)	36, 302
MspR9I	CCNGG	2 cut(s)	224, 278
MunI	CAATTG	1 cut(s)	76
MvaI	CCWGG	2 cut(s)	224, 278
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	3 cut(s)	175, 196, 378
PciSI	GCTCTTC	2 cut(s)	123, 346
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 279
PleI	GAGTC	5 cut(s)	47, 67, 136, 161, 182
PpsI	GAGTC	5 cut(s)	47, 67, 136, 161, 182
Psp124BI	GAGCTC	2 cut(s)	135, 291
Psp6I	CCWGG	2 cut(s)	222, 276
PspGI	CCWGG	2 cut(s)	222, 276
RsaI	GTAC	2 cut(s)	164, 352
RsaNI	GTAC	2 cut(s)	163, 351
SacI	GAGCTC	2 cut(s)	135, 291
SapI	GCTCTTC	2 cut(s)	123, 346
SaqAI	TTAA	2 cut(s)	36, 302
Sau3AI	GATC	1 cut(s)	270
ScaI	AGTACT	1 cut(s)	352
SchI	GAGTC	5 cut(s)	47, 68, 136, 161, 182
ScrFI	CCNGG	2 cut(s)	224, 278
SduI	GDGCHC	3 cut(s)	85, 135, 291
SetI	ASST	4 cut(s)	104, 135, 291, 301
Sse9I	AATT	3 cut(s)	9, 24, 76
SsiI	CCGC	2 cut(s)	67, 151
SstI	GAGCTC	2 cut(s)	135, 291
StyD4I	CCNGG	2 cut(s)	222, 276
TaaI	ACNGT	3 cut(s)	43, 209, 266
TaqI	TCGA	3 cut(s)	120, 186, 273
TasI	AATT	3 cut(s)	9, 24, 76
TatI	WGTACW	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	36, 302
Tru9I	TTAA	2 cut(s)	36, 302
TspDTI	ATGAA	3 cut(s)	17, 209, 229
TspGWI	ACGGA	1 cut(s)	306
XapI	RAATTY	1 cut(s)	24
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.