Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005891

Physical Location & Seq

Genomic Coordinates Forward (+)

26784372 .. 26785540

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002176

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAGCGCACGTCGACTCCGACCTCGTCTTTCGCATCCTCCGCGCCTGCTCTGCCTCCTCCACCGAGTCCCTCCGCTTCTTCAATTGGGCCCGCACCCACCACCTACCACCCCACCACCCTCGAAACCGAAGAGCTCGTCAAGACTCTCTCCCTCTCCAAAAAGTACGAGTCCATGTGGAAAATCCTCGACTCCATGAAAACCCATCACGCTCTAACACTCTCCCAGGACACCCTTTGCTTCATTATGCAAGAGTATGACAAGCACGGCCTGATTGACCAGGTCGTTGAGCTCTTCAATCGAGCTCCCAAGACCTTTAACAACTTACAGTCCGTGCAAGTTCACAACGCTCTGCTCTTCTCTCTCTGCCACACTAAGCTCTTTCACGGCGCTTATGCCCCAGTGTGGAGGCTGATTCGAAAAGGGCTCGTTCCGAATAAGATGACGTATTCCATTTTGGTCAATGCTTGGTGTTCTAATGGCAAGATGAAAGAGGCGCAGCTCTTCTTGGAGGAGATGAGTGAGAAGGGGTTTAATCCACAGGTTCGAGGCCGTGATCTGCTGCTTGAGGGCTTACTCAATGCTGGTTATATTGAGGCTGCCAAAGATATGGTGAGGAAAATGGTCAAGGAAAACTGTGTACTTGATGTTTCTACTTTTAATGCATTGCTAGAAGCTATTTGTAAGTCTGGGGACGTTGAGTTTTGCATTGGTCTTTATTGGGAGGCAACTGGATTGGGGCTTTGTCCTGATATGAATACTTATAAAGTGTTGATACCGGCGGTTTCCACGGTTGGGAGGATGGATGATGCATTTAGGCTTTTGCATAATGCGATTGAGGACGGGCACATGCCTGAGATGAAGGTCAAGGGTCATCCTTCGAATCGGCCGGTATATACCATGTTGATAACTATGGCTGGACGTGGAGGCCGGTTTGTTGAGGCTGCAAATTACTTGATGGAGATGACTGAGTTGGAGTTGATGTCGATTTTGCGGTGCTTTGATTTGGTTACGGATGGATTGAAGAATAGTGGGAAGCATGATCTGGCTAAGAGAATTGAGCAATTGGAAGTTTCTCTTAAGGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

364

Amino Acids

40.5

Weight (kDa)

6.6

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	137 - 241	6.7e-10	Fungal tetratrico peptide repeats
PPR_1	PF12854	141 - 174	8.7e-11	PPR repeat
PPR	PF01535	149 - 178	5.5e-06	PPR repeat
PPR_2	PF13041	188 - 229	4.8e-07	PPR repeat family
PPR_2	PF13041	216 - 261	3.6e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18390
fragaria_vesca	FvH4_4g11972
malus_domestica	MD04G1235400.v1.1
prunus_persica	Prupe.6G355300_v2.0.a1
pyrus_communis	pycom04g20890
rosa_chinensis	RchiOBHm_Chr7g0230951
rosa_laevigata	RLG00000001439 RLG00000002174 RLG00000002176
rosa_multiflora	Rmu_sc0000453.1_g000016 Rmu_sc0000453.1_g000017 Rmu_sc0002014.1_g000047
rosa_roxburghii	Rroxscaffold_3G00229640 Rroxscaffold_3G00238690 Rroxscaffold_3G00238710 Rroxscaffold_3G00238720 Rroxscaffold_3G00238730
rosa_rugosa	Rorug07G0263500
rosa_samantha	Rh7AG416900 Rh7AG417000 Rh7BG392800 Rh7BG392900 Rh7CG436000 Rh7CG436100 Rh7DG411100 Rh7DG411200
rosa_wichuraiana	Rw1G007620 Rw7G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	765
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	1 cut(s)	44
AciI	CCGC	5 cut(s)	42, 75, 93, 782, 994
AcoI	YGGCCR	1 cut(s)	887
AfaI	GTAC	3 cut(s)	167, 642, 1087
AfiI	CCNNNNNNNGG	2 cut(s)	405, 795
AflII	CTTAAG	1 cut(s)	1079
AgsI	TTSAA	3 cut(s)	84, 298, 1024
AjiI	CACGTC	2 cut(s)	12, 923
AjnI	CCWGG	2 cut(s)	225, 279
AluBI	AGCT	6 cut(s)	136, 292, 305, 379, 502, 677
AluI	AGCT	6 cut(s)	136, 292, 305, 379, 502, 677
Alw21I	GWGCWC	3 cut(s)	138, 294, 307
AoxI	GGCC	5 cut(s)	89, 268, 550, 887, 928
ApaI	GGGCCC	1 cut(s)	93
ApeKI	GCWGC	4 cut(s)	499, 562, 599, 944
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AspLEI	GCGC	4 cut(s)	9, 46, 392, 499
AspS9I	GGNCC	2 cut(s)	89, 90
AsuHPI	GGTGA	1 cut(s)	625
AsuII	TTCGAA	2 cut(s)	418, 881
BaeGI	GKGCMC	2 cut(s)	93, 849
BanII	GRGCYC	5 cut(s)	93, 138, 294, 307, 429
Bbv12I	GWGCWC	3 cut(s)	138, 294, 307
BbvI	GCAGC	4 cut(s)	511, 549, 586, 931
BccI	CCATC	4 cut(s)	213, 796, 952, 1010
BceAI	ACGGC	3 cut(s)	283, 403, 537
BciT130I	CCWGG	2 cut(s)	227, 281
BfaI	CTAG	1 cut(s)	671
BfoI	RGCGCY	1 cut(s)	393
BfrI	CTTAAG	1 cut(s)	1079
BisI	GCNGC	4 cut(s)	500, 563, 600, 945
BlsI	GCNGC	4 cut(s)	501, 564, 601, 946
Bme1390I	CCNGG	2 cut(s)	227, 281
BmgBI	CACGTC	2 cut(s)	12, 923
BmgT120I	GGNCC	2 cut(s)	89, 90
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	2 cut(s)	227, 281
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	44, 799
BmuI	ACTGGG	1 cut(s)	395
Bpu14I	TTCGAA	2 cut(s)	418, 881
BpuEI	CTTGAG	1 cut(s)	587
BsaJI	CCNNGG	2 cut(s)	225, 789
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 31, 968, 998
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 795
Bse118I	RCCGGY	3 cut(s)	778, 889, 930
Bse1I	ACTGG	2 cut(s)	401, 736
Bse3DI	GCAATG	1 cut(s)	665
BseBI	CCWGG	2 cut(s)	227, 281
BseDI	CCNNGG	2 cut(s)	225, 789
BseGI	GGATG	5 cut(s)	35, 807, 811, 874, 1021
BseLI	CCNNNNNNNGG	2 cut(s)	405, 795
BseMI	GCAATG	1 cut(s)	665
BseMII	CTCAG	2 cut(s)	846, 960
BseNI	ACTGG	2 cut(s)	401, 736
BseRI	GAGGAG	2 cut(s)	48, 527
BseSI	GKGCMC	2 cut(s)	93, 849
BseX3I	CGGCCG	1 cut(s)	887
BseXI	GCAGC	4 cut(s)	511, 549, 586, 931
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	890
BshFI	GGCC	5 cut(s)	91, 270, 552, 889, 930
BsiEI	CGRYCG	1 cut(s)	890
BsiHKAI	GWGCWC	3 cut(s)	138, 294, 307
BsiSI	CCGG	3 cut(s)	779, 890, 931
BslFI	GGGAC	2 cut(s)	54, 707
BslI	CCNNNNNNNGG	2 cut(s)	405, 795
BsmFI	GGGAC	2 cut(s)	54, 707
BsnI	GGCC	5 cut(s)	91, 270, 552, 889, 930
Bsp119I	TTCGAA	2 cut(s)	418, 881
Bsp120I	GGGCCC	1 cut(s)	89
Bsp1286I	GDGCHC	6 cut(s)	93, 138, 294, 307, 429, 849
Bsp143I	GATC	2 cut(s)	556, 1042
BspACI	CCGC	5 cut(s)	42, 75, 93, 782, 994
BspANI	GGCC	5 cut(s)	91, 270, 552, 889, 930
BspCNI	CTCAG	2 cut(s)	847, 961
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	91
BspQI	GCTCTTC	4 cut(s)	126, 299, 362, 509
BspT104I	TTCGAA	2 cut(s)	418, 881
BspTI	CTTAAG	1 cut(s)	1079
BsrDI	GCAATG	1 cut(s)	665
BsrFI	RCCGGY	3 cut(s)	778, 889, 930
BsrI	ACTGG	2 cut(s)	401, 736
BssAI	RCCGGY	3 cut(s)	778, 889, 930
BssECI	CCNNGG	2 cut(s)	225, 789
BssMI	GATC	2 cut(s)	556, 1042
Bst2UI	CCWGG	2 cut(s)	227, 281
Bst4CI	ACNGT	3 cut(s)	330, 638, 793
Bst6I	CTCTTC	4 cut(s)	126, 299, 362, 509
BstAFI	CTTAAG	1 cut(s)	1079
BstBI	TTCGAA	2 cut(s)	418, 881
BstC8I	GCNNGC	2 cut(s)	48, 93
BstDEI	CTNAG	4 cut(s)	375, 855, 969, 1050
BstDSI	CCRYGG	1 cut(s)	789
BstF5I	GGATG	5 cut(s)	35, 807, 811, 874, 1021
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	4 cut(s)	9, 46, 392, 499
BstKTI	GATC	2 cut(s)	559, 1045
BstMBI	GATC	2 cut(s)	556, 1042
BstMCI	CGRYCG	1 cut(s)	890
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 52
BstNI	CCWGG	2 cut(s)	227, 281
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	2 cut(s)	225, 279
BstSLI	GKGCMC	2 cut(s)	93, 849
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	4 cut(s)	511, 549, 586, 931
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstZI	CGGCCG	1 cut(s)	887
BsuRI	GGCC	5 cut(s)	91, 270, 552, 889, 930
BtgI	CCRYGG	1 cut(s)	789
BtrI	CACGTC	2 cut(s)	12, 923
BtsCI	GGATG	5 cut(s)	35, 807, 811, 874, 1021
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	48, 93
CfoI	GCGC	4 cut(s)	9, 46, 392, 499
Cfr10I	RCCGGY	3 cut(s)	778, 889, 930
Cfr13I	GGNCC	2 cut(s)	89, 90
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	3 cut(s)	166, 641, 1086
CviAII	CATG	6 cut(s)	175, 196, 850, 901, 1040, 1089
CviQI	GTAC	3 cut(s)	166, 641, 1086
DdeI	CTNAG	4 cut(s)	375, 855, 969, 1050
DpnI	GATC	2 cut(s)	558, 1044
DpnII	GATC	2 cut(s)	556, 1042
EaeI	YGGCCR	1 cut(s)	887
EagI	CGGCCG	1 cut(s)	887
Eam1104I	CTCTTC	4 cut(s)	126, 299, 362, 509
EarI	CTCTTC	4 cut(s)	126, 299, 362, 509
Ecl136II	GAGCTC	3 cut(s)	136, 292, 305
EclXI	CGGCCG	1 cut(s)	887
Eco24I	GRGCYC	5 cut(s)	93, 138, 294, 307, 429
Eco52I	CGGCCG	1 cut(s)	887
Eco53kI	GAGCTC	3 cut(s)	136, 292, 305
EcoICRI	GAGCTC	3 cut(s)	136, 292, 305
EcoRII	CCWGG	2 cut(s)	225, 279
EcoT22I	ATGCAT	2 cut(s)	667, 814
EcoT38I	GRGCYC	5 cut(s)	93, 138, 294, 307, 429
FaeI	CATG	6 cut(s)	178, 199, 853, 904, 1043, 1092
FalI	AAGNNNNNCTT	1 cut(s)	1062
FaqI	GGGAC	2 cut(s)	54, 707
FatI	CATG	6 cut(s)	174, 195, 849, 900, 1039, 1088
FauI	CCCGC	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	4 cut(s)	500, 563, 600, 945
FokI	GGATG	5 cut(s)	22, 814, 818, 861, 1028
FriOI	GRGCYC	5 cut(s)	93, 138, 294, 307, 429
Fsp4HI	GCNGC	4 cut(s)	500, 563, 600, 945
FspBI	CTAG	1 cut(s)	671
GlaI	GCGC	4 cut(s)	8, 45, 391, 498
GluI	GCNGC	4 cut(s)	500, 563, 600, 945
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	5 cut(s)	91, 270, 552, 889, 930
HapII	CCGG	3 cut(s)	779, 890, 931
HhaI	GCGC	4 cut(s)	9, 46, 392, 499
Hin1II	CATG	6 cut(s)	178, 199, 853, 904, 1043, 1092
Hin6I	GCGC	4 cut(s)	7, 44, 390, 497
HinP1I	GCGC	4 cut(s)	7, 44, 390, 497
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	7 cut(s)	16, 67, 145, 170, 191, 415, 883
HpaII	CCGG	3 cut(s)	779, 890, 931
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	3 cut(s)	15, 343, 641
Hpy188I	TCNGA	2 cut(s)	21, 435
Hpy188III	TCNNGA	2 cut(s)	142, 749
Hpy8I	GTNNAC	3 cut(s)	15, 343, 641
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	520, 856, 888
HpyCH4III	ACNGT	3 cut(s)	330, 638, 793
HpyCH4IV	ACGT	4 cut(s)	11, 446, 696, 922
HpyCH4V	TGCA	7 cut(s)	250, 337, 665, 708, 812, 826, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 52
HpyF3I	CTNAG	4 cut(s)	375, 855, 969, 1050
HpySE526I	ACGT	4 cut(s)	11, 446, 696, 922
Hsp92II	CATG	6 cut(s)	178, 199, 853, 904, 1043, 1092
HspAI	GCGC	4 cut(s)	7, 44, 390, 497
Kzo9I	GATC	2 cut(s)	556, 1042
LguI	GCTCTTC	4 cut(s)	126, 299, 362, 509
LmnI	GCTCC	2 cut(s)	4, 310
Lsp1109I	GCAGC	4 cut(s)	511, 549, 586, 931
LweI	GCATC	2 cut(s)	44, 799
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	1 cut(s)	671
MaeII	ACGT	4 cut(s)	11, 446, 696, 922
MaeIII	GTNAC	1 cut(s)	1009
MalI	GATC	2 cut(s)	558, 1044
MboI	GATC	2 cut(s)	556, 1042
MboII	GAAGA	6 cut(s)	72, 143, 286, 349, 496, 1036
MfeI	CAATTG	2 cut(s)	84, 1064
MhlI	GDGCHC	6 cut(s)	93, 138, 294, 307, 429, 849
MluCI	AATT	4 cut(s)	84, 949, 1056, 1064
MlyI	GAGTC	5 cut(s)	10, 76, 139, 179, 185
MmeI	TCCRAC	2 cut(s)	44, 954
Mph1103I	ATGCAT	2 cut(s)	667, 814
MseI	TTAA	4 cut(s)	318, 534, 660, 1080
MspCI	CTTAAG	1 cut(s)	1079
MspI	CCGG	3 cut(s)	779, 890, 931
MspR9I	CCNGG	2 cut(s)	227, 281
MunI	CAATTG	2 cut(s)	84, 1064
MvaI	CCWGG	2 cut(s)	227, 281
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	41, 52
NdeII	GATC	2 cut(s)	556, 1042
NlaIII	CATG	6 cut(s)	178, 199, 853, 904, 1043, 1092
NlaIV	GGNNCC	1 cut(s)	91
NsiI	ATGCAT	2 cut(s)	667, 814
NspI	RCATGY	1 cut(s)	853
NspV	TTCGAA	2 cut(s)	418, 881
PciSI	GCTCTTC	4 cut(s)	126, 299, 362, 509
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	415, 883
PflFI	GACNNNGTC	2 cut(s)	25, 281
PkrI	GCNGC	4 cut(s)	501, 564, 601, 946
PleI	GAGTC	5 cut(s)	10, 75, 139, 178, 185
PpsI	GAGTC	5 cut(s)	10, 75, 139, 178, 185
PsiI	TTATAA	1 cut(s)	765
Psp124BI	GAGCTC	3 cut(s)	138, 294, 307
Psp6I	CCWGG	2 cut(s)	225, 279
PspGI	CCWGG	2 cut(s)	225, 279
PspN4I	GGNNCC	1 cut(s)	91
PspOMI	GGGCCC	1 cut(s)	89
PspPI	GGNCC	2 cut(s)	89, 90
PsyI	GACNNNGTC	2 cut(s)	25, 281
RsaI	GTAC	3 cut(s)	167, 642, 1087
RsaNI	GTAC	3 cut(s)	166, 641, 1086
SacI	GAGCTC	3 cut(s)	138, 294, 307
SalI	GTCGAC	1 cut(s)	13
SapI	GCTCTTC	4 cut(s)	126, 299, 362, 509
SaqAI	TTAA	4 cut(s)	318, 534, 660, 1080
SatI	GCNGC	4 cut(s)	500, 563, 600, 945
Sau3AI	GATC	2 cut(s)	556, 1042
Sau96I	GGNCC	2 cut(s)	89, 90
SchI	GAGTC	5 cut(s)	10, 76, 139, 179, 185
ScrFI	CCNGG	2 cut(s)	227, 281
SduI	GDGCHC	6 cut(s)	93, 138, 294, 307, 429, 849
SexAI	ACCWGGT	1 cut(s)	279
SfaNI	GCATC	2 cut(s)	44, 799
SfuI	TTCGAA	2 cut(s)	418, 881
SmlI	CTYRAG	2 cut(s)	566, 1079
SmoI	CTYRAG	2 cut(s)	566, 1079
Sse9I	AATT	4 cut(s)	84, 949, 1056, 1064
SsiI	CCGC	5 cut(s)	42, 75, 93, 782, 994
SspMI	CTAG	1 cut(s)	671
SstI	GAGCTC	3 cut(s)	138, 294, 307
StyD4I	CCNGG	2 cut(s)	225, 279
TaaI	ACNGT	3 cut(s)	330, 638, 793
TaiI	ACGT	4 cut(s)	14, 449, 699, 925
TaqI	TCGA	8 cut(s)	14, 123, 189, 301, 418, 547, 881, 986
TasI	AATT	4 cut(s)	84, 949, 1056, 1064
TatI	WGTACW	1 cut(s)	640
TfiI	GAWTC	2 cut(s)	415, 883
Tru1I	TTAA	4 cut(s)	318, 534, 660, 1080
Tru9I	TTAA	4 cut(s)	318, 534, 660, 1080
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	4 cut(s)	499, 562, 599, 944
TspDTI	ATGAA	5 cut(s)	212, 232, 503, 770, 875
TspGWI	ACGGA	2 cut(s)	322, 1028
TspRI	CASTG	1 cut(s)	408
Tth111I	GACNNNGTC	2 cut(s)	25, 281
Vha464I	CTTAAG	1 cut(s)	1079
XceI	RCATGY	1 cut(s)	853
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	1 cut(s)	671
Zsp2I	ATGCAT	2 cut(s)	667, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.