Prupe.6G355300_v2.0.a1

Pentatricopeptide repeat-containing protein At5g18390

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
30181214 .. 30182596
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G355300.1

Sequence Viewer

Length: 1383 bp
ATGTTGGCTTCCACCAAAAACTCGTTGCTCTTCTTTCTCCACCGCTCCAAACCCCAAACGCACTGCGTCCTCCTCCGCCACCTCGCCACCGTCAATGCCGCTCCACAAAACCGCGTCGTCCCCACCAAGGACGACTACTTCTCAGCCATCCAACACATCACCAACATCGTACGGCGCGACCACTTCATGGAGCGCACACTCAACAAGCTTCGCATTACCGTCGATTCCGAACTCGTCTACCGAGTCCTCCGCGCCTGTTCAGCTGCAGGCACCGAGTCACTCCGATTCTTCAACTGGGCCCGGACCCACCACCCCACCTATCACCCCACGACATTAGAGCTCGAAGAGCTGGTGAAGACGCTAGCTCGCACCAAGAAGTACGAGTCAATGTGGAAACTCCTCCAATCTATGCAAACCCATCACGGCTTAACCCTCTCTCAAGAAAGCCTTTGCTTCGTTATCGAAGAATATGGCAACCACGGCCTCGTTGACCAGGCCGTAGAGCTTTTCAACCGAGCCCCAAAAACCTTTAATTGCTTGCAGACCGTGGAGGTATACAATGCTCTGCTCTTCTCGCTTTGCCAAGCTAAGCTCTTTCATGCTGCTTATGCTTTGGTGAGAAGGATGATACGAAAAGGGCTTGTCCCGGATAAGAGGACTTATTCAATTTTGGTGAATGCTTGGTGCTCCAATGGGAAAATGAGGGAGGCCCAATTGTTCTTGGAGGAGATGAGCAGCAAAGGATTTAATCCGCCGGTTCGAGGGCGTGATCTTCTCGTAGAAGGGTTGCTGAATGCCGGTTACATTGAGGCTGCTAAAGAAATGGTAAGGAAAATGGTTAAGGAAGGGTTTGTTCCTGATGTTTCTACTTTCAATTCGTTGATGGAGGCTATCTGTAAATGTGGGGAGGTTGAGTTTTGCATTGATCTGTATTGGGAAGCAAATGGTTTGGGGCTTTGTCCTGATATCAATACTTACAAGGTGTTGATACCTGCGGTTTCAAAGGTGGGTAGGATAGATGATGCATTTAGGCTTTTGCATAATTCGATCGAGGACGGGCATAGGCCATTTCCAAGCTTGTATGCGCCTATAATCAAGGGGATGTGCAGGAGGGGTCAGTTTGATGATGCCTTCTGCTTTTTTAGTGAGATGAAAGTTAAGGGGCATCCCCCAAACAGGCCTGTATATACCATGCTGATCACCATGTCTGGGCGCGGAGGGAGGTTTGTTGAGGCTGCTAATTACTTGGTGGAAATGACTGAGATGGGGTTGATGCCGATTTCGCGGTGCTTTGATTTGGTTACTGATGGGTTGAAGAATTGTGGGAAGCATGATATGGCTAAGAGGATTGAACAATTGGAAGTTTCTCTCCGGGGCACATGA

Protein Analysis

461

Amino Acids

52.43

Weight (kDa)

8.89

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1000
AccB1I GGYRCC 1 cut(s) 269
AccB7I CCANNNNNTGG 1 cut(s) 187
AccBSI CCGCTC 2 cut(s) 45, 101
AccI GTMKAC 2 cut(s) 237, 555
AccII CGCG 5 cut(s) 114, 177, 252, 1215, 1285
AciI CCGC 9 cut(s) 43, 76, 99, 112, 250, 752, 995, 1215, 1285
AfaI GTAC 2 cut(s) 171, 380
AfiI CCNNNNNNNGG 5 cut(s) 127, 187, 761, 1176, 1209
AgsI TTSAA 7 cut(s) 292, 511, 666, 874, 1002, 1315, 1352
AjnI CCWGG 1 cut(s) 492
AluBI AGCT 9 cut(s) 208, 263, 340, 349, 365, 505, 587, 592, 1077
AluI AGCT 9 cut(s) 208, 263, 340, 349, 365, 505, 587, 592, 1077
Alw21I GWGCWC 2 cut(s) 342, 689
AoxI GGCC 6 cut(s) 297, 481, 495, 708, 1064, 1178
ApaI GGGCCC 1 cut(s) 301
ApeKI GCWGC 5 cut(s) 263, 602, 735, 812, 1235
AspLEI GCGC 5 cut(s) 177, 195, 254, 1087, 1215
AspS9I GGNCC 4 cut(s) 297, 298, 303, 709
AsuC2I CCSGG 3 cut(s) 301, 647, 1373
AsuHPI GGTGA 6 cut(s) 151, 314, 364, 628, 685, 1192
AsuNHI GCTAGC 1 cut(s) 361
AvaII GGWCC 1 cut(s) 303
BaeGI GKGCMC 2 cut(s) 301, 1379
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 3 cut(s) 301, 342, 520
BbsI GAAGAC 1 cut(s) 362
Bbv12I GWGCWC 2 cut(s) 342, 689
BbvI GCAGC 5 cut(s) 250, 589, 747, 799, 1222
BccI CCATC 5 cut(s) 155, 426, 877, 1258, 1301
BceAI ACGGC 4 cut(s) 188, 439, 482, 496
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 1 cut(s) 494
BclI TGATCA 1 cut(s) 1197
BcnI CCSGG 3 cut(s) 301, 647, 1373
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 264
BfuAI ACCTGC 1 cut(s) 1000
BisI GCNGC 6 cut(s) 99, 264, 603, 736, 813, 1236
BlpI GCTNAGC 1 cut(s) 588
BlsI GCNGC 6 cut(s) 100, 265, 604, 737, 814, 1237
Bme1390I CCNGG 4 cut(s) 301, 494, 647, 1373
Bme18I GGWCC 1 cut(s) 303
BmgT120I GGNCC 4 cut(s) 297, 298, 303, 709
BmiI GGNNCC 3 cut(s) 271, 299, 305
BmrFI CCNGG 4 cut(s) 301, 494, 647, 1373
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 4 cut(s) 1012, 1117, 1174, 1263
BmtI GCTAGC 1 cut(s) 365
BmuI ACTGGG 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 362
Bpu1102I GCTNAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 423
BpuMI CCSGG 3 cut(s) 301, 647, 1373
BsaJI CCNNGG 4 cut(s) 126, 478, 546, 1372
BsaXI ACNNNNNCTCC 2 cut(s) 899, 929
Bsc4I CCNNNNNNNGG 5 cut(s) 127, 187, 761, 1176, 1209
Bse118I RCCGGY 2 cut(s) 754, 797
Bse1I ACTGG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 4 cut(s) 126, 478, 546, 1372
BseGI GGATG 4 cut(s) 147, 630, 1107, 1165
BseLI CCNNNNNNNGG 5 cut(s) 127, 187, 761, 1176, 1209
BseMII CTCAG 2 cut(s) 156, 1251
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 3 cut(s) 62, 389, 740
BseSI GKGCMC 2 cut(s) 301, 1379
BseXI GCAGC 5 cut(s) 250, 589, 747, 799, 1222
BsgI GTGCAG 1 cut(s) 1126
Bsh1236I CGCG 5 cut(s) 114, 177, 252, 1215, 1285
Bsh1285I CGRYCG 1 cut(s) 1050
BshFI GGCC 6 cut(s) 299, 483, 497, 710, 1066, 1180
BshNI GGYRCC 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 1050
BsiHKAI GWGCWC 2 cut(s) 342, 689
BsiSI CCGG 5 cut(s) 301, 647, 755, 798, 1372
BsiWI CGTACG 1 cut(s) 169
BslFI GGGAC 2 cut(s) 104, 629
BslI CCNNNNNNNGG 5 cut(s) 127, 187, 761, 1176, 1209
BsmFI GGGAC 2 cut(s) 104, 629
BsmI GAATGC 2 cut(s) 682, 799
BsnI GGCC 6 cut(s) 299, 483, 497, 710, 1066, 1180
Bsp120I GGGCCC 1 cut(s) 297
Bsp1286I GDGCHC 5 cut(s) 301, 342, 520, 689, 1379
Bsp143I GATC 4 cut(s) 769, 925, 1047, 1197
Bsp1720I GCTNAGC 1 cut(s) 588
BspACI CCGC 9 cut(s) 43, 76, 99, 112, 250, 752, 995, 1215, 1285
BspANI GGCC 6 cut(s) 299, 483, 497, 710, 1066, 1180
BspCNI CTCAG 2 cut(s) 155, 1252
BspFNI CGCG 5 cut(s) 114, 177, 252, 1215, 1285
BspLI GGNNCC 3 cut(s) 271, 299, 305
BspMAI CTGCAG 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 1000
BspOI GCTAGC 1 cut(s) 365
BspQI GCTCTTC 3 cut(s) 35, 339, 575
BspT107I GGYRCC 1 cut(s) 269
BsrBI CCGCTC 2 cut(s) 45, 101
BsrFI RCCGGY 2 cut(s) 754, 797
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 2 cut(s) 754, 797
BssECI CCNNGG 4 cut(s) 126, 478, 546, 1372
BssMI GATC 4 cut(s) 769, 925, 1047, 1197
BssNAI GTATAC 1 cut(s) 556
BssT1I CCWWGG 1 cut(s) 126
Bst1107I GTATAC 1 cut(s) 556
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 3 cut(s) 91, 220, 547
Bst6I CTCTTC 3 cut(s) 35, 339, 575
BstC8I GCNNGC 4 cut(s) 268, 363, 367, 539
BstDEI CTNAG 4 cut(s) 142, 588, 1260, 1341
BstDSI CCRYGG 2 cut(s) 478, 546
BstF5I GGATG 4 cut(s) 147, 630, 1107, 1165
BstFNI CGCG 5 cut(s) 114, 177, 252, 1215, 1285
BstHHI GCGC 5 cut(s) 177, 195, 254, 1087, 1215
BstKTI GATC 4 cut(s) 772, 928, 1050, 1200
BstMBI GATC 4 cut(s) 769, 925, 1047, 1197
BstMCI CGRYCG 1 cut(s) 1050
BstMWI GCNNNNNNNGC 6 cut(s) 260, 346, 480, 574, 608, 1282
BstNI CCWGG 1 cut(s) 494
BstSCI CCNGG 4 cut(s) 299, 492, 645, 1371
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 2 cut(s) 301, 1379
BstUI CGCG 5 cut(s) 114, 177, 252, 1215, 1285
BstV1I GCAGC 5 cut(s) 250, 589, 747, 799, 1222
BstV2I GAAGAC 1 cut(s) 362
BstZ17I GTATAC 1 cut(s) 556
BsuRI GGCC 6 cut(s) 299, 483, 497, 710, 1066, 1180
BtgI CCRYGG 2 cut(s) 478, 546
BtsCI GGATG 4 cut(s) 147, 630, 1107, 1165
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 1000
Cac8I GCNNGC 4 cut(s) 268, 363, 367, 539
CfoI GCGC 5 cut(s) 177, 195, 254, 1087, 1215
Cfr10I RCCGGY 2 cut(s) 754, 797
Cfr13I GGNCC 4 cut(s) 297, 298, 303, 709
CseI GACGC 3 cut(s) 55, 103, 367
Csp6I GTAC 2 cut(s) 170, 379
CviAII CATG 6 cut(s) 187, 599, 1192, 1204, 1331, 1380
CviQI GTAC 2 cut(s) 170, 379
DdeI CTNAG 4 cut(s) 142, 588, 1260, 1341
DpnI GATC 4 cut(s) 771, 927, 1049, 1199
DpnII GATC 4 cut(s) 769, 925, 1047, 1197
Eam1104I CTCTTC 3 cut(s) 35, 339, 575
EarI CTCTTC 3 cut(s) 35, 339, 575
EciI GGCGGA 2 cut(s) 65, 741
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 126
Eco147I AGGCCT 1 cut(s) 1180
Eco24I GRGCYC 3 cut(s) 301, 342, 520
Eco32I GATATC 1 cut(s) 967
Eco47I GGWCC 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 492
EcoRV GATATC 1 cut(s) 967
EcoT14I CCWWGG 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 1027
EcoT38I GRGCYC 3 cut(s) 301, 342, 520
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 6 cut(s) 190, 602, 1195, 1207, 1334, 1383
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 2 cut(s) 104, 629
FatI CATG 6 cut(s) 186, 598, 1191, 1203, 1330, 1379
FbaI TGATCA 1 cut(s) 1197
FblI GTMKAC 2 cut(s) 237, 555
Fnu4HI GCNGC 6 cut(s) 99, 264, 603, 736, 813, 1236
FokI GGATG 4 cut(s) 134, 637, 1114, 1152
FriOI GRGCYC 3 cut(s) 301, 342, 520
Fsp4HI GCNGC 6 cut(s) 99, 264, 603, 736, 813, 1236
FspBI CTAG 1 cut(s) 362
GlaI GCGC 5 cut(s) 176, 194, 253, 1086, 1214
GluI GCNGC 6 cut(s) 99, 264, 603, 736, 813, 1236
HaeIII GGCC 6 cut(s) 299, 483, 497, 710, 1066, 1180
HapII CCGG 5 cut(s) 301, 647, 755, 798, 1372
HgaI GACGC 3 cut(s) 55, 103, 367
HhaI GCGC 5 cut(s) 177, 195, 254, 1087, 1215
Hin1II CATG 6 cut(s) 190, 602, 1195, 1207, 1334, 1383
Hin6I GCGC 5 cut(s) 175, 193, 252, 1085, 1213
HinP1I GCGC 5 cut(s) 175, 193, 252, 1085, 1213
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 2 cut(s) 206, 1075
HinfI GANTC 5 cut(s) 224, 243, 275, 285, 383
HpaII CCGG 5 cut(s) 301, 647, 755, 798, 1372
HphI GGTGA 6 cut(s) 151, 314, 364, 628, 685, 1192
Hpy166II GTNNAC 3 cut(s) 238, 490, 556
Hpy188I TCNGA 2 cut(s) 229, 284
Hpy188III TCNNGA 3 cut(s) 440, 857, 962
Hpy8I GTNNAC 3 cut(s) 238, 490, 556
Hpy99I CGWCG 2 cut(s) 119, 224
HpyAV CCTTC 4 cut(s) 615, 776, 839, 1141
HpyCH4III ACNGT 3 cut(s) 91, 220, 547
HpyCH4V TGCA 7 cut(s) 266, 412, 541, 921, 1025, 1039, 1107
HpyF10VI GCNNNNNNNGC 6 cut(s) 260, 346, 480, 574, 608, 1282
HpyF3I CTNAG 4 cut(s) 142, 588, 1260, 1341
Hsp92II CATG 6 cut(s) 190, 602, 1195, 1207, 1334, 1383
HspAI GCGC 5 cut(s) 175, 193, 252, 1085, 1213
Ksp22I TGATCA 1 cut(s) 1197
Kzo9I GATC 4 cut(s) 769, 925, 1047, 1197
LguI GCTCTTC 3 cut(s) 35, 339, 575
LmnI GCTCC 4 cut(s) 50, 106, 190, 692
Lsp1109I GCAGC 5 cut(s) 250, 589, 747, 799, 1222
LweI GCATC 4 cut(s) 1012, 1117, 1174, 1263
MaeI CTAG 1 cut(s) 362
MaeIII GTNAC 3 cut(s) 276, 800, 1300
MalI GATC 4 cut(s) 771, 927, 1049, 1199
MbiI CCGCTC 2 cut(s) 45, 101
MboI GATC 4 cut(s) 769, 925, 1047, 1197
MboII GAAGA 8 cut(s) 22, 280, 356, 367, 476, 562, 764, 1327
MfeI CAATTG 2 cut(s) 713, 1355
MhlI GDGCHC 5 cut(s) 301, 342, 520, 689, 1379
MluCI AATT 8 cut(s) 532, 666, 713, 874, 1042, 1240, 1318, 1355
MlyI GAGTC 3 cut(s) 252, 284, 392
MmeI TCCRAC 1 cut(s) 175
Mph1103I ATGCAT 1 cut(s) 1027
MseI TTAA 5 cut(s) 428, 531, 747, 840, 1158
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 5 cut(s) 301, 647, 755, 798, 1372
MspR9I CCNGG 4 cut(s) 301, 494, 647, 1373
MunI CAATTG 2 cut(s) 713, 1355
Mva1269I GAATGC 2 cut(s) 682, 799
MvaI CCWGG 1 cut(s) 494
MvnI CGCG 5 cut(s) 114, 177, 252, 1215, 1285
MwoI GCNNNNNNNGC 6 cut(s) 260, 346, 480, 574, 608, 1282
NciI CCSGG 3 cut(s) 301, 647, 1373
NdeII GATC 4 cut(s) 769, 925, 1047, 1197
NheI GCTAGC 1 cut(s) 361
NlaIII CATG 6 cut(s) 190, 602, 1195, 1207, 1334, 1383
NlaIV GGNNCC 3 cut(s) 271, 299, 305
NmuCI GTSAC 1 cut(s) 276
NsiI ATGCAT 1 cut(s) 1027
PceI AGGCCT 1 cut(s) 1180
PciSI GCTCTTC 3 cut(s) 35, 339, 575
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 2 cut(s) 682, 799
PfeI GAWTC 2 cut(s) 224, 285
Pfl23II CGTACG 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 187
PfoI TCCNGGA 1 cut(s) 645
PkrI GCNGC 6 cut(s) 100, 265, 604, 737, 814, 1237
Ple19I CGATCG 1 cut(s) 1050
PleI GAGTC 3 cut(s) 251, 283, 391
PpsI GAGTC 3 cut(s) 251, 283, 391
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PspLI CGTACG 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 271, 299, 305
PspOMI GGGCCC 1 cut(s) 297
PspPI GGNCC 4 cut(s) 297, 298, 303, 709
PstI CTGCAG 1 cut(s) 268
PvuI CGATCG 1 cut(s) 1050
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 171, 380
RsaNI GTAC 2 cut(s) 170, 379
SacI GAGCTC 1 cut(s) 342
SapI GCTCTTC 3 cut(s) 35, 339, 575
SaqAI TTAA 5 cut(s) 428, 531, 747, 840, 1158
SatI GCNGC 6 cut(s) 99, 264, 603, 736, 813, 1236
Sau3AI GATC 4 cut(s) 769, 925, 1047, 1197
Sau96I GGNCC 4 cut(s) 297, 298, 303, 709
SchI GAGTC 3 cut(s) 252, 284, 392
ScrFI CCNGG 4 cut(s) 301, 494, 647, 1373
SduI GDGCHC 5 cut(s) 301, 342, 520, 689, 1379
SfaNI GCATC 4 cut(s) 1012, 1117, 1174, 1263
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
Sse9I AATT 8 cut(s) 532, 666, 713, 874, 1042, 1240, 1318, 1355
SseBI AGGCCT 1 cut(s) 1180
SsiI CCGC 9 cut(s) 43, 76, 99, 112, 250, 752, 995, 1215, 1285
SspMI CTAG 1 cut(s) 362
SstI GAGCTC 1 cut(s) 342
StuI AGGCCT 1 cut(s) 1180
StyD4I CCNGG 4 cut(s) 299, 492, 645, 1371
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 3 cut(s) 91, 220, 547
TaqI TCGA 6 cut(s) 222, 342, 462, 760, 1046, 1050
TasI AATT 8 cut(s) 532, 666, 713, 874, 1042, 1240, 1318, 1355
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 2 cut(s) 224, 285
Tru1I TTAA 5 cut(s) 428, 531, 747, 840, 1158
Tru9I TTAA 5 cut(s) 428, 531, 747, 840, 1158
TscAI CASTG 1 cut(s) 68
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 5 cut(s) 263, 602, 735, 812, 1235
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 3 cut(s) 175, 587, 1166
TspRI CASTG 1 cut(s) 68
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 303
XmiI GTMKAC 2 cut(s) 237, 555
XspI CTAG 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.