Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_RdRP1_2 | PF26250 | 4 - 82 | 5.9e-12 | RdRP1/2, RRM domain |
| PH_RDR2 | PF24823 | 95 - 230 | 3.2e-28 | RDR2 PH-like domain |
| RdRP_helical | PF26252 | 248 - 323 | 1.9e-12 | RNA dependent RNA polymerase, helical domain |
| RdRP | PF05183 | 350 - 920 | 4.9e-191 | RNA dependent RNA polymerase |
| RdRP_head | PF26253 | 944 - 1094 | 1.3e-42 | RdRP, head domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 476, 519, 849 |
| Acc65I | GGTACC | 1 cut(s) | 3144 |
| AccB1I | GGYRCC | 2 cut(s) | 1430, 3144 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 125, 647, 755, 2293 |
| AccI | GTMKAC | 2 cut(s) | 77, 1065 |
| AccII | CGCG | 2 cut(s) | 1198, 2673 |
| AciI | CCGC | 4 cut(s) | 985, 1196, 1198, 1636 |
| AclWI | GGATC | 8 cut(s) | 854, 867, 1489, 1664, 1877, 2397, 2466, 3083 |
| AcsI | RAATTY | 4 cut(s) | 62, 155, 793, 1330 |
| AcuI | CTGAAG | 6 cut(s) | 30, 716, 1140, 2538, 2967, 3062 |
| AdeI | CACNNNGTG | 2 cut(s) | 1208, 2293 |
| AfaI | GTAC | 7 cut(s) | 218, 962, 971, 1035, 1763, 2235, 3146 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3013 |
| AhlI | ACTAGT | 1 cut(s) | 3080 |
| AjiI | CACGTC | 1 cut(s) | 2272 |
| AjnI | CCWGG | 6 cut(s) | 820, 1433, 1460, 2239, 2807, 3009 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1526, 1558 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 893, 925 |
| Alw21I | GWGCWC | 3 cut(s) | 381, 423, 1181 |
| Alw26I | GTCTC | 4 cut(s) | 1377, 1460, 1518, 3195 |
| Alw44I | GTGCAC | 1 cut(s) | 377 |
| AlwI | GGATC | 8 cut(s) | 854, 867, 1489, 1664, 1877, 2397, 2466, 3083 |
| Ama87I | CYCGRG | 1 cut(s) | 240 |
| AoxI | GGCC | 4 cut(s) | 537, 1360, 1929, 2327 |
| ApaLI | GTGCAC | 1 cut(s) | 377 |
| ApeKI | GCWGC | 4 cut(s) | 585, 927, 1999, 3125 |
| ApoI | RAATTY | 4 cut(s) | 62, 155, 793, 1330 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1500, 1872, 2400, 2990 |
| Asp718I | GGTACC | 1 cut(s) | 3144 |
| AspLEI | GCGC | 4 cut(s) | 131, 176, 2281, 2673 |
| AspS9I | GGNCC | 6 cut(s) | 1076, 1360, 1755, 1822, 2037, 3007 |
| AsuHPI | GGTGA | 7 cut(s) | 361, 990, 1292, 2129, 2770, 2797, 2965 |
| AsuNHI | GCTAGC | 1 cut(s) | 866 |
| AvaI | CYCGRG | 1 cut(s) | 240 |
| AvaII | GGWCC | 5 cut(s) | 1076, 1755, 1822, 2037, 3007 |
| BaeGI | GKGCMC | 1 cut(s) | 381 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2878, 2911, 2964, 2997 |
| BamHI | GGATCC | 1 cut(s) | 859 |
| BanI | GGYRCC | 2 cut(s) | 1430, 3144 |
| BanII | GRGCYC | 3 cut(s) | 423, 508, 1181 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1348, 1380, 2940, 2972 |
| BbsI | GAAGAC | 1 cut(s) | 3322 |
| Bbv12I | GWGCWC | 3 cut(s) | 381, 423, 1181 |
| BbvI | GCAGC | 4 cut(s) | 572, 914, 1986, 3137 |
| BceAI | ACGGC | 1 cut(s) | 2471 |
| BciT130I | CCWGG | 6 cut(s) | 822, 1435, 1462, 2241, 2809, 3011 |
| BciVI | GTATCC | 1 cut(s) | 1239 |
| BclI | TGATCA | 2 cut(s) | 466, 1047 |
| BcoDI | GTCTC | 4 cut(s) | 1377, 1460, 1518, 3195 |
| BcuI | ACTAGT | 1 cut(s) | 3080 |
| BfaI | CTAG | 7 cut(s) | 854, 867, 1230, 1301, 2577, 2820, 3081 |
| BfmI | CTRYAG | 3 cut(s) | 165, 1182, 2000 |
| BfoI | RGCGCY | 1 cut(s) | 2282 |
| BfuI | GTATCC | 1 cut(s) | 1239 |
| BglII | AGATCT | 1 cut(s) | 2069 |
| BisI | GCNGC | 4 cut(s) | 586, 928, 2000, 3126 |
| BlsI | GCNGC | 4 cut(s) | 587, 929, 2001, 3127 |
| Bme1390I | CCNGG | 6 cut(s) | 822, 1435, 1462, 2241, 2809, 3011 |
| Bme18I | GGWCC | 5 cut(s) | 1076, 1755, 1822, 2037, 3007 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3013 |
| BmeT110I | CYCGRG | 1 cut(s) | 240 |
| BmgBI | CACGTC | 1 cut(s) | 2272 |
| BmgT120I | GGNCC | 6 cut(s) | 1076, 1360, 1755, 1822, 2037, 3007 |
| BmiI | GGNNCC | 8 cut(s) | 505, 747, 861, 1361, 1432, 1531, 1823, 3146 |
| BmrFI | CCNGG | 6 cut(s) | 822, 1435, 1462, 2241, 2809, 3011 |
| BmrI | ACTGGG | 3 cut(s) | 1916, 2106, 3181 |
| BmtI | GCTAGC | 1 cut(s) | 870 |
| BmuI | ACTGGG | 3 cut(s) | 1916, 2106, 3181 |
| BpiI | GAAGAC | 1 cut(s) | 3322 |
| BpmI | CTGGAG | 5 cut(s) | 89, 102, 2262, 2421, 3032 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2347 |
| BpuEI | CTTGAG | 2 cut(s) | 437, 3232 |
| BsaAI | YACGTR | 1 cut(s) | 500 |
| BsaI | GGTCTC | 1 cut(s) | 3195 |
| Bse1I | ACTGG | 9 cut(s) | 85, 557, 938, 1391, 1911, 2101, 2158, 2644, 3176 |
| Bse3DI | GCAATG | 1 cut(s) | 2135 |
| BseBI | CCWGG | 6 cut(s) | 822, 1435, 1462, 2241, 2809, 3011 |
| BseMI | GCAATG | 1 cut(s) | 2135 |
| BseMII | CTCAG | 5 cut(s) | 297, 738, 1007, 2361, 2951 |
| BseNI | ACTGG | 9 cut(s) | 85, 557, 938, 1391, 1911, 2101, 2158, 2644, 3176 |
| BseRI | GAGGAG | 4 cut(s) | 86, 323, 2397, 2600 |
| BseSI | GKGCMC | 1 cut(s) | 381 |
| BseXI | GCAGC | 4 cut(s) | 572, 914, 1986, 3137 |
| BseYI | CCCAGC | 2 cut(s) | 2385, 2911 |
| BsgI | GTGCAG | 2 cut(s) | 654, 1353 |
| Bsh1236I | CGCG | 2 cut(s) | 1198, 2673 |
| BshFI | GGCC | 4 cut(s) | 539, 1362, 1931, 2329 |
| BshNI | GGYRCC | 2 cut(s) | 1430, 3144 |
| BsiHKAI | GWGCWC | 3 cut(s) | 381, 423, 1181 |
| BsiHKCI | CYCGRG | 1 cut(s) | 240 |
| BslFI | GGGAC | 2 cut(s) | 1835, 2113 |
| BsmAI | GTCTC | 4 cut(s) | 1377, 1460, 1518, 3195 |
| BsmBI | CGTCTC | 1 cut(s) | 1518 |
| BsmFI | GGGAC | 2 cut(s) | 1835, 2113 |
| BsmI | GAATGC | 3 cut(s) | 176, 983, 2348 |
| BsnI | GGCC | 4 cut(s) | 539, 1362, 1931, 2329 |
| Bso31I | GGTCTC | 1 cut(s) | 3195 |
| BsoBI | CYCGRG | 1 cut(s) | 240 |
| Bsp1286I | GDGCHC | 4 cut(s) | 381, 423, 508, 1181 |
| Bsp1407I | TGTACA | 3 cut(s) | 969, 1033, 2233 |
| Bsp19I | CCATGG | 1 cut(s) | 3221 |
| BspACI | CCGC | 4 cut(s) | 985, 1196, 1198, 1636 |
| BspANI | GGCC | 4 cut(s) | 539, 1362, 1931, 2329 |
| BspCNI | CTCAG | 5 cut(s) | 298, 737, 1006, 2360, 2952 |
| BspFNI | CGCG | 2 cut(s) | 1198, 2673 |
| BspHI | TCATGA | 2 cut(s) | 2392, 2461 |
| BspLI | GGNNCC | 8 cut(s) | 505, 747, 861, 1361, 1432, 1531, 1823, 3146 |
| BspMAI | CTGCAG | 2 cut(s) | 169, 2004 |
| BspOI | GCTAGC | 1 cut(s) | 870 |
| BspPI | GGATC | 8 cut(s) | 854, 867, 1489, 1664, 1877, 2397, 2466, 3083 |
| BspT107I | GGYRCC | 2 cut(s) | 1430, 3144 |
| BspTNI | GGTCTC | 1 cut(s) | 3195 |
| BsrDI | GCAATG | 1 cut(s) | 2135 |
| BsrGI | TGTACA | 3 cut(s) | 969, 1033, 2233 |
| BsrI | ACTGG | 9 cut(s) | 85, 557, 938, 1391, 1911, 2101, 2158, 2644, 3176 |
| BssNAI | GTATAC | 2 cut(s) | 78, 1066 |
| BssT1I | CCWWGG | 6 cut(s) | 646, 754, 918, 1810, 2182, 3221 |
| Bst1107I | GTATAC | 2 cut(s) | 78, 1066 |
| Bst2UI | CCWGG | 6 cut(s) | 822, 1435, 1462, 2241, 2809, 3011 |
| Bst6I | CTCTTC | 4 cut(s) | 245, 607, 692, 1209 |
| BstAUI | TGTACA | 3 cut(s) | 969, 1033, 2233 |
| BstBAI | YACGTR | 1 cut(s) | 500 |
| BstC8I | GCNNGC | 7 cut(s) | 828, 868, 983, 1692, 1851, 2277, 2601 |
| BstDEI | CTNAG | 6 cut(s) | 306, 724, 993, 1259, 2347, 2960 |
| BstDSI | CCRYGG | 3 cut(s) | 36, 1196, 3221 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2806 |
| BstFNI | CGCG | 2 cut(s) | 1198, 2673 |
| BstH2I | RGCGCY | 1 cut(s) | 2282 |
| BstHHI | GCGC | 4 cut(s) | 131, 176, 2281, 2673 |
| BstMAI | GTCTC | 4 cut(s) | 1377, 1460, 1518, 3195 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 173, 536, 1577, 1644, 1901, 2605, 2917, 3131 |
| BstNI | CCWGG | 6 cut(s) | 822, 1435, 1462, 2241, 2809, 3011 |
| BstNSI | RCATGY | 1 cut(s) | 1711 |
| BstSCI | CCNGG | 6 cut(s) | 820, 1433, 1460, 2239, 2807, 3009 |
| BstSFI | CTRYAG | 3 cut(s) | 165, 1182, 2000 |
| BstSLI | GKGCMC | 1 cut(s) | 381 |
| BstUI | CGCG | 2 cut(s) | 1198, 2673 |
| BstV1I | GCAGC | 4 cut(s) | 572, 914, 1986, 3137 |
| BstV2I | GAAGAC | 1 cut(s) | 3322 |
| BstX2I | RGATCY | 2 cut(s) | 859, 2069 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 945, 2815 |
| BstYI | RGATCY | 2 cut(s) | 859, 2069 |
| BstZ17I | GTATAC | 2 cut(s) | 78, 1066 |
| BsuI | GTATCC | 1 cut(s) | 1239 |
| BsuRI | GGCC | 4 cut(s) | 539, 1362, 1931, 2329 |
| BtgI | CCRYGG | 3 cut(s) | 36, 1196, 3221 |
| BtrI | CACGTC | 1 cut(s) | 2272 |
| BtsI | GCAGTG | 2 cut(s) | 60, 2359 |
| Cac8I | GCNNGC | 7 cut(s) | 828, 868, 983, 1692, 1851, 2277, 2601 |
| CciI | TCATGA | 2 cut(s) | 2392, 2461 |
| CfoI | GCGC | 4 cut(s) | 131, 176, 2281, 2673 |
| Cfr13I | GGNCC | 6 cut(s) | 1076, 1360, 1755, 1822, 2037, 3007 |
| Cfr42I | CCGCGG | 1 cut(s) | 1199 |
| CseI | GACGC | 1 cut(s) | 3316 |
| Csp6I | GTAC | 7 cut(s) | 217, 961, 970, 1034, 1762, 2234, 3145 |
| CviQI | GTAC | 7 cut(s) | 217, 961, 970, 1034, 1762, 2234, 3145 |
| DdeI | CTNAG | 6 cut(s) | 306, 724, 993, 1259, 2347, 2960 |
| DraIII | CACNNNGTG | 2 cut(s) | 1208, 2293 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3013 |
| Eam1104I | CTCTTC | 4 cut(s) | 245, 607, 692, 1209 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3013 |
| EarI | CTCTTC | 4 cut(s) | 245, 607, 692, 1209 |
| Ecl136II | GAGCTC | 2 cut(s) | 421, 1179 |
| Eco130I | CCWWGG | 6 cut(s) | 646, 754, 918, 1810, 2182, 3221 |
| Eco147I | AGGCCT | 1 cut(s) | 2329 |
| Eco24I | GRGCYC | 3 cut(s) | 423, 508, 1181 |
| Eco31I | GGTCTC | 1 cut(s) | 3195 |
| Eco32I | GATATC | 3 cut(s) | 303, 1566, 3100 |
| Eco47I | GGWCC | 5 cut(s) | 1076, 1755, 1822, 2037, 3007 |
| Eco53kI | GAGCTC | 2 cut(s) | 421, 1179 |
| Eco57I | CTGAAG | 6 cut(s) | 30, 716, 1140, 2538, 2967, 3062 |
| Eco88I | CYCGRG | 1 cut(s) | 240 |
| EcoICRI | GAGCTC | 2 cut(s) | 421, 1179 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2806 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1360, 3007 |
| EcoRI | GAATTC | 2 cut(s) | 155, 1330 |
| EcoRII | CCWGG | 6 cut(s) | 820, 1433, 1460, 2239, 2807, 3009 |
| EcoRV | GATATC | 3 cut(s) | 303, 1566, 3100 |
| EcoT14I | CCWWGG | 6 cut(s) | 646, 754, 918, 1810, 2182, 3221 |
| EcoT38I | GRGCYC | 3 cut(s) | 423, 508, 1181 |
| ErhI | CCWWGG | 6 cut(s) | 646, 754, 918, 1810, 2182, 3221 |
| Esp3I | CGTCTC | 1 cut(s) | 1518 |
| FaqI | GGGAC | 2 cut(s) | 1835, 2113 |
| FbaI | TGATCA | 2 cut(s) | 466, 1047 |
| FblI | GTMKAC | 2 cut(s) | 77, 1065 |
| Fnu4HI | GCNGC | 4 cut(s) | 586, 928, 2000, 3126 |
| FriOI | GRGCYC | 3 cut(s) | 423, 508, 1181 |
| Fsp4HI | GCNGC | 4 cut(s) | 586, 928, 2000, 3126 |
| FspBI | CTAG | 7 cut(s) | 854, 867, 1230, 1301, 2577, 2820, 3081 |
| GlaI | GCGC | 4 cut(s) | 130, 175, 2280, 2672 |
| GluI | GCNGC | 4 cut(s) | 586, 928, 2000, 3126 |
| GsaI | CCCAGC | 2 cut(s) | 2389, 2915 |
| GsuI | CTGGAG | 5 cut(s) | 89, 102, 2262, 2421, 3032 |
| HaeII | RGCGCY | 1 cut(s) | 2282 |
| HaeIII | GGCC | 4 cut(s) | 539, 1362, 1931, 2329 |
| HgaI | GACGC | 1 cut(s) | 3316 |
| HhaI | GCGC | 4 cut(s) | 131, 176, 2281, 2673 |
| Hin6I | GCGC | 4 cut(s) | 129, 174, 2279, 2671 |
| HinP1I | GCGC | 4 cut(s) | 129, 174, 2279, 2671 |
| HincII | GTYRAC | 2 cut(s) | 1787, 2626 |
| HindII | GTYRAC | 2 cut(s) | 1787, 2626 |
| HindIII | AAGCTT | 3 cut(s) | 413, 2679, 2744 |
| HphI | GGTGA | 7 cut(s) | 361, 990, 1292, 2129, 2770, 2797, 2965 |
| HpyAV | CCTTC | 9 cut(s) | 80, 674, 1013, 1350, 1862, 1939, 2566, 2812, 3040 |
| HpyCH4IV | ACGT | 2 cut(s) | 499, 2271 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 173, 536, 1577, 1644, 1901, 2605, 2917, 3131 |
| HpyF3I | CTNAG | 6 cut(s) | 306, 724, 993, 1259, 2347, 2960 |
| HpySE526I | ACGT | 2 cut(s) | 499, 2271 |
| HspAI | GCGC | 4 cut(s) | 129, 174, 2279, 2671 |
| KpnI | GGTACC | 1 cut(s) | 3148 |
| Ksp22I | TGATCA | 2 cut(s) | 466, 1047 |
| KspI | CCGCGG | 1 cut(s) | 1199 |
| LmnI | GCTCC | 5 cut(s) | 426, 503, 616, 751, 2613 |
| Lsp1109I | GCAGC | 4 cut(s) | 572, 914, 1986, 3137 |
| MaeI | CTAG | 7 cut(s) | 854, 867, 1230, 1301, 2577, 2820, 3081 |
| MaeII | ACGT | 2 cut(s) | 499, 2271 |
| MflI | RGATCY | 2 cut(s) | 859, 2069 |
| MhlI | GDGCHC | 4 cut(s) | 381, 423, 508, 1181 |
| MlyI | GAGTC | 4 cut(s) | 233, 899, 2621, 3023 |
| MmeI | TCCRAC | 5 cut(s) | 417, 1119, 1459, 1697, 1845 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1500, 1872, 2400, 2990 |
| MseI | TTAA | 6 cut(s) | 1106, 1833, 2418, 2595, 2796, 3021 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2337, 3139, 3288 |
| MspA1I | CMGCKG | 1 cut(s) | 1198 |
| MspR9I | CCNGG | 6 cut(s) | 822, 1435, 1462, 2241, 2809, 3011 |
| Mva1269I | GAATGC | 3 cut(s) | 176, 983, 2348 |
| MvaI | CCWGG | 6 cut(s) | 822, 1435, 1462, 2241, 2809, 3011 |
| MvnI | CGCG | 2 cut(s) | 1198, 2673 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 173, 536, 1577, 1644, 1901, 2605, 2917, 3131 |
| NcoI | CCATGG | 1 cut(s) | 3221 |
| NheI | GCTAGC | 1 cut(s) | 866 |
| NlaIV | GGNNCC | 8 cut(s) | 505, 747, 861, 1361, 1432, 1531, 1823, 3146 |
| NmeAIII | GCCGAG | 1 cut(s) | 2002 |
| NmuCI | GTSAC | 9 cut(s) | 55, 277, 349, 996, 1403, 2548, 2778, 3036, 3290 |
| NspI | RCATGY | 1 cut(s) | 1711 |
| PaeR7I | CTCGAG | 1 cut(s) | 240 |
| PagI | TCATGA | 2 cut(s) | 2392, 2461 |
| PceI | AGGCCT | 1 cut(s) | 2329 |
| PctI | GAATGC | 3 cut(s) | 176, 983, 2348 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1500, 1872, 2400, 2990 |
| PfeI | GAWTC | 7 cut(s) | 556, 988, 1780, 1873, 2401, 2834, 3313 |
| PflFI | GACNNNGTC | 1 cut(s) | 13 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 125, 647, 755, 2293 |
| PkrI | GCNGC | 4 cut(s) | 587, 929, 2001, 3127 |
| PleI | GAGTC | 4 cut(s) | 232, 898, 2621, 3022 |
| PpsI | GAGTC | 4 cut(s) | 232, 898, 2621, 3022 |
| Ppu21I | YACGTR | 1 cut(s) | 500 |
| PpuMI | RGGWCCY | 1 cut(s) | 3007 |
| PsiI | TTATAA | 3 cut(s) | 476, 519, 849 |
| Psp124BI | GAGCTC | 2 cut(s) | 423, 1181 |
| Psp5II | RGGWCCY | 1 cut(s) | 3007 |
| Psp6I | CCWGG | 6 cut(s) | 820, 1433, 1460, 2239, 2807, 3009 |
| PspFI | CCCAGC | 2 cut(s) | 2385, 2911 |
| PspGI | CCWGG | 6 cut(s) | 820, 1433, 1460, 2239, 2807, 3009 |
| PspN4I | GGNNCC | 8 cut(s) | 505, 747, 861, 1361, 1432, 1531, 1823, 3146 |
| PspPI | GGNCC | 6 cut(s) | 1076, 1360, 1755, 1822, 2037, 3007 |
| PspPPI | RGGWCCY | 1 cut(s) | 3007 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1026, 1058 |
| PstI | CTGCAG | 2 cut(s) | 169, 2004 |
| PsuI | RGATCY | 2 cut(s) | 859, 2069 |
| PsyI | GACNNNGTC | 1 cut(s) | 13 |
| RsaI | GTAC | 7 cut(s) | 218, 962, 971, 1035, 1763, 2235, 3146 |
| RsaNI | GTAC | 7 cut(s) | 217, 961, 970, 1034, 1762, 2234, 3145 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2337, 3139, 3288 |
| SacI | GAGCTC | 2 cut(s) | 423, 1181 |
| SacII | CCGCGG | 1 cut(s) | 1199 |
| SaqAI | TTAA | 6 cut(s) | 1106, 1833, 2418, 2595, 2796, 3021 |
| SatI | GCNGC | 4 cut(s) | 586, 928, 2000, 3126 |
| Sau96I | GGNCC | 6 cut(s) | 1076, 1360, 1755, 1822, 2037, 3007 |
| SchI | GAGTC | 4 cut(s) | 233, 899, 2621, 3023 |
| ScrFI | CCNGG | 6 cut(s) | 822, 1435, 1462, 2241, 2809, 3011 |
| SduI | GDGCHC | 4 cut(s) | 381, 423, 508, 1181 |
| SfcI | CTRYAG | 3 cut(s) | 165, 1182, 2000 |
| Sfr274I | CTCGAG | 1 cut(s) | 240 |
| Sfr303I | CCGCGG | 1 cut(s) | 1199 |
| SgrBI | CCGCGG | 1 cut(s) | 1199 |
| SinI | GGWCC | 5 cut(s) | 1076, 1755, 1822, 2037, 3007 |
| SlaI | CTCGAG | 1 cut(s) | 240 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2337, 3139, 3288 |
| SmlI | CTYRAG | 3 cut(s) | 240, 416, 3211 |
| SmoI | CTYRAG | 3 cut(s) | 240, 416, 3211 |
| SpeI | ACTAGT | 1 cut(s) | 3080 |
| SseBI | AGGCCT | 1 cut(s) | 2329 |
| SsiI | CCGC | 4 cut(s) | 985, 1196, 1198, 1636 |
| SspI | AATATT | 2 cut(s) | 1538, 2767 |
| SspMI | CTAG | 7 cut(s) | 854, 867, 1230, 1301, 2577, 2820, 3081 |
| SstI | GAGCTC | 2 cut(s) | 423, 1181 |
| StuI | AGGCCT | 1 cut(s) | 2329 |
| StyD4I | CCNGG | 6 cut(s) | 820, 1433, 1460, 2239, 2807, 3009 |
| StyI | CCWWGG | 6 cut(s) | 646, 754, 918, 1810, 2182, 3221 |
| TaiI | ACGT | 2 cut(s) | 502, 2274 |
| TaqI | TCGA | 7 cut(s) | 205, 241, 559, 2871, 2984, 3017, 3234 |
| TatI | WGTACW | 5 cut(s) | 960, 969, 1033, 1761, 2233 |
| TfiI | GAWTC | 7 cut(s) | 556, 988, 1780, 1873, 2401, 2834, 3313 |
| Tru1I | TTAA | 6 cut(s) | 1106, 1833, 2418, 2595, 2796, 3021 |
| Tru9I | TTAA | 6 cut(s) | 1106, 1833, 2418, 2595, 2796, 3021 |
| TseFI | GTSAC | 9 cut(s) | 55, 277, 349, 996, 1403, 2548, 2778, 3036, 3290 |
| TseI | GCWGC | 4 cut(s) | 585, 927, 1999, 3125 |
| Tsp45I | GTSAC | 9 cut(s) | 55, 277, 349, 996, 1403, 2548, 2778, 3036, 3290 |
| TspGWI | ACGGA | 3 cut(s) | 234, 1542, 2062 |
| Tth111I | GACNNNGTC | 1 cut(s) | 13 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 125, 647, 755, 2293 |
| VneI | GTGCAC | 1 cut(s) | 377 |
| VpaK11BI | GGWCC | 5 cut(s) | 1076, 1755, 1822, 2037, 3007 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2806 |
| XapI | RAATTY | 4 cut(s) | 62, 155, 793, 1330 |
| XceI | RCATGY | 1 cut(s) | 1711 |
| XhoI | CTCGAG | 1 cut(s) | 240 |
| XmiI | GTMKAC | 2 cut(s) | 77, 1065 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1500, 1872, 2400, 2990 |
| XspI | CTAG | 7 cut(s) | 854, 867, 1230, 1301, 2577, 2820, 3081 |