Prupe.1G132200_v2.0.a1
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
10413167 .. 10415923
2757 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G132200.2

Sequence Viewer

Length: 1539 bp
ATGGATAACACAATTTGGTTGAATGGATTTTCCTCCATGGACATGGAGTCTCCAGCAGCAGTGACAGAATTTCTGGAGGCATATACCGGAAAAGGAACTGTTCATGATGTAAAGCTTTTTCCTCCCAAAGATGGAAAGTCAAGAACATTTGCCATTGTTCGGTTCACACATGCAGAATTTGCTGATATGATAATTGCATTAGCCGATCATCGGATCCTGTGGTACAATGAGTCTTATCTGATAGCTAAAAAATCGAGGTTTGGCATCGTGCCCGACTCAGAAATCTTTCAGCACCGCATGGAACTTGTACGACTTCACTTGGGATGCAAGATTTCTGAGGAACAGTTTTCTGTGCTTTGGGAAAGATCGGATGTTTTGGTGAAATTTGGGGTGGGACTTAAGAACATCTACTTGTTTTTCTCTTATGCTTCGGTTGATTACAAGCTTGAGATCACGCTTGAAAATGATAGCCAGATTGAGCTACGTCGTCCACACGGTCAACTTACAAAGTTTCTTCTCATCCAGTTACTTGGTGCCCCTCGGCTTCTCAAGAAAGCTTCCGGACAGTGGGTTCGAGGAGTTGGTTTTACTCCTTCATGCTGCATTGGACAATCTTCTGCTGTATGTTTGGAGCTTCTACCTGGGTGCGAGCTTCCAAATCTACGCAAAAGTTTTATTCATTATAAAGAACACGACGGACCATTCGTTCTGGAGAGAGCAGATGCTGCCATCAACAGTACCAACATGGTCAAGACAATTCGGTTGCATGGATTCCCCTCCATTGAGTCTCCAGAAGCGGTGACAGAATTTCTTGAGGAATATACTGGGAAAGCAACTGTTTCTGATGTACAGATTCTTCCGCCTAAAGATGTTAAATCAAGAGCATCTGCCATAGTTGAATTCACACATGCAGAATATGCTGACGTGATAATTCCATTAGCCGATGATCGACGTCTGTGGTACGGGGATTCTTATCTGAAAGCTAGAAAGCAGAAGCTTGAAAACTTTGAACATAACATGGAACTTATAAAGCTGCACTCGGGCTTCCTGACTTCCGAGGAACACTTTTCTGTGCTTTGGACAACATCGGATGTTTCAGTGAAATTCGGGACGGCATTTAAGAATATCTACCTATTGTTTTCTTTTGATGATGTTGAATACAAGCTAGAGATCTCCCCTGAAAGTATTAGCCAGATTGAGCTAAATCATCCACGGGGCCAATTTCCAAAGTTTCTTCTAATCCAGTTACTTGGTGCCCCTCGGATTTTCAAGAAAGATTCTCAAAATCGCTGGGTTCGAGAAGTTGATTTCACTCCTTCATGCTGCATTGGGCAATCTTCTGCTGTATGCTTGGAACTTCCACCTAGGTGTGAGCTTCCAAATCTGCGCAAGTGTTTTGTTGATTATAAAGAAAATGAAGGACGGTTCATCCTGGAGGAAGGCAACACTTTCTCCTGCAATTCAGATCTTGTTCCTATTGTAGGTCCACCCATGGGCATTACACTACTACAAAAAGTGAAAAAGACGACCAGAAAATAA

Protein Analysis

513

Amino Acids

58.31

Weight (kDa)

6.42

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 684, 1028, 1407
AatII GACGTC 1 cut(s) 955
Acc16I TGCGCA 1 cut(s) 1388
AccB1I GGYRCC 2 cut(s) 533, 1253
AccIII TCCGGA 1 cut(s) 560
AciI CCGC 3 cut(s) 295, 797, 860
AclWI GGATC 2 cut(s) 208, 221
AcsI RAATTY 6 cut(s) 68, 176, 383, 806, 899, 1103
AcyI GRCGYC 1 cut(s) 952
AfaI GTAC 5 cut(s) 224, 309, 739, 849, 962
AfiI CCNNNNNNNGG 6 cut(s) 131, 159, 210, 567, 1481, 1493
AflII CTTAAG 1 cut(s) 398
AgsI TTSAA 7 cut(s) 22, 461, 899, 1001, 1010, 1157, 1270
AhdI GACNNNNNGTC 1 cut(s) 46
AjiI CACGTC 1 cut(s) 925
AjnI CCWGG 2 cut(s) 640, 1431
AleI CACNNNNGTG 1 cut(s) 1366
AloI GAACNNNNNNTCC 4 cut(s) 555, 587, 690, 722
Alw26I GTCTC 2 cut(s) 54, 792
AlwI GGATC 2 cut(s) 208, 221
AlwNI CAGNNNCTG 1 cut(s) 725
Ama87I CYCGRG 1 cut(s) 1039
Aor13HI TCCGGA 1 cut(s) 560
AoxI GGCC 1 cut(s) 1216
ApeKI GCWGC 5 cut(s) 56, 600, 725, 1033, 1323
ApoI RAATTY 6 cut(s) 68, 176, 383, 806, 899, 1103
ArsI GACNNNNNNTTYG 4 cut(s) 555, 587, 686, 718
Asp700I GAANNNNTTC 1 cut(s) 285
AspA2I CCTAGG 1 cut(s) 1364
AspLEI GCGC 1 cut(s) 1389
AspS9I GGNCC 3 cut(s) 698, 1216, 1484
AsuHPI GGTGA 2 cut(s) 391, 811
AvaI CYCGRG 1 cut(s) 1039
AvaII GGWCC 2 cut(s) 698, 1484
AvrII CCTAGG 1 cut(s) 1364
BaeGI GKGCMC 3 cut(s) 273, 538, 1258
BamHI GGATCC 1 cut(s) 213
BanI GGYRCC 2 cut(s) 533, 1253
BarI GAAGNNNNNNTAC 2 cut(s) 840, 872
BbvI GCAGC 5 cut(s) 68, 587, 712, 1020, 1310
BccI CCATC 2 cut(s) 125, 737
BceAI ACGGC 1 cut(s) 1128
BciT130I CCWGG 2 cut(s) 642, 1433
BcoDI GTCTC 2 cut(s) 54, 792
BfaI CTAG 3 cut(s) 984, 1166, 1365
BfrI CTTAAG 1 cut(s) 398
BglII AGATCT 2 cut(s) 1170, 1465
BisI GCNGC 5 cut(s) 57, 601, 726, 1034, 1324
BlnI CCTAGG 1 cut(s) 1364
BlsI GCNGC 5 cut(s) 58, 602, 727, 1035, 1325
Bme1390I CCNGG 2 cut(s) 642, 1433
Bme18I GGWCC 2 cut(s) 698, 1484
BmeRI GACNNNNNGTC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 1039
BmgBI CACGTC 1 cut(s) 925
BmgT120I GGNCC 3 cut(s) 698, 1216, 1484
BmiI GGNNCC 4 cut(s) 215, 535, 1217, 1255
BmrFI CCNGG 2 cut(s) 642, 1433
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 4 cut(s) 273, 314, 712, 893
BmuI ACTGGG 1 cut(s) 834
BpmI CTGGAG 5 cut(s) 36, 95, 731, 774, 1454
BpuEI CTTGAG 3 cut(s) 467, 533, 833
BsaBI GATNNNNATC 1 cut(s) 972
BsaHI GRCGYC 1 cut(s) 952
BsaJI CCNNGG 8 cut(s) 36, 539, 641, 1056, 1211, 1259, 1364, 1491
BsaWI WCCGGW 2 cut(s) 86, 560
BsaXI ACNNNNNCTCC 2 cut(s) 1436, 1466
Bsc4I CCNNNNNNNGG 6 cut(s) 131, 159, 210, 567, 1481, 1493
Bse1I ACTGG 3 cut(s) 523, 829, 1243
Bse8I GATNNNNATC 1 cut(s) 972
BseAI TCCGGA 1 cut(s) 560
BseBI CCWGG 2 cut(s) 642, 1433
BseDI CCNNGG 8 cut(s) 36, 539, 641, 1056, 1211, 1259, 1364, 1491
BseGI GGATG 6 cut(s) 329, 376, 519, 1096, 1207, 1428
BseJI GATNNNNATC 1 cut(s) 972
BseLI CCNNNNNNNGG 6 cut(s) 131, 159, 210, 567, 1481, 1493
BseMII CTCAG 2 cut(s) 291, 327
BseNI ACTGG 3 cut(s) 523, 829, 1243
BseRI GAGGAG 1 cut(s) 591
BseSI GKGCMC 3 cut(s) 273, 538, 1258
BseXI GCAGC 5 cut(s) 68, 587, 712, 1020, 1310
BseYI CCCAGC 1 cut(s) 1290
BsgI GTGCAG 1 cut(s) 1019
BshFI GGCC 1 cut(s) 1218
BshNI GGYRCC 2 cut(s) 533, 1253
BsiHKCI CYCGRG 1 cut(s) 1039
BsiSI CCGG 2 cut(s) 87, 561
BslFI GGGAC 2 cut(s) 408, 1123
BslI CCNNNNNNNGG 6 cut(s) 131, 159, 210, 567, 1481, 1493
BsmAI GTCTC 2 cut(s) 54, 792
BsmFI GGGAC 2 cut(s) 408, 1123
BsnI GGCC 1 cut(s) 1218
BsoBI CYCGRG 1 cut(s) 1039
Bsp1286I GDGCHC 3 cut(s) 273, 538, 1258
Bsp13I TCCGGA 1 cut(s) 560
Bsp1407I TGTACA 1 cut(s) 847
Bsp143I GATC 7 cut(s) 205, 213, 365, 450, 946, 1170, 1465
Bsp19I CCATGG 2 cut(s) 36, 1491
BspACI CCGC 3 cut(s) 295, 797, 860
BspANI GGCC 1 cut(s) 1218
BspCNI CTCAG 2 cut(s) 290, 328
BspEI TCCGGA 1 cut(s) 560
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 4 cut(s) 215, 535, 1217, 1255
BspPI GGATC 2 cut(s) 208, 221
BspT107I GGYRCC 2 cut(s) 533, 1253
BspTI CTTAAG 1 cut(s) 398
BsrGI TGTACA 1 cut(s) 847
BsrI ACTGG 3 cut(s) 523, 829, 1243
BssECI CCNNGG 8 cut(s) 36, 539, 641, 1056, 1211, 1259, 1364, 1491
BssMI GATC 7 cut(s) 205, 213, 365, 450, 946, 1170, 1465
BssNI GRCGYC 1 cut(s) 952
BssT1I CCWWGG 3 cut(s) 36, 1364, 1491
Bst2UI CCWGG 2 cut(s) 642, 1433
Bst4CI ACNGT 7 cut(s) 100, 345, 497, 567, 737, 838, 1425
BstACI GRCGYC 1 cut(s) 952
BstAFI CTTAAG 1 cut(s) 398
BstAPI GCANNNNNTGC 3 cut(s) 179, 725, 917
BstAUI TGTACA 1 cut(s) 847
BstC8I GCNNGC 1 cut(s) 650
BstDEI CTNAG 2 cut(s) 277, 336
BstDSI CCRYGG 3 cut(s) 36, 1211, 1491
BstENI CCTNNNNNAGG 1 cut(s) 1479
BstF5I GGATG 6 cut(s) 329, 376, 519, 1096, 1207, 1428
BstHHI GCGC 1 cut(s) 1389
BstKTI GATC 7 cut(s) 208, 216, 368, 453, 949, 1173, 1468
BstMAI GTCTC 2 cut(s) 54, 792
BstMBI GATC 7 cut(s) 205, 213, 365, 450, 946, 1170, 1465
BstMWI GCNNNNNNNGC 3 cut(s) 179, 725, 917
BstNI CCWGG 2 cut(s) 642, 1433
BstNSI RCATGY 2 cut(s) 173, 911
BstSCI CCNGG 2 cut(s) 640, 1431
BstSLI GKGCMC 3 cut(s) 273, 538, 1258
BstV1I GCAGC 5 cut(s) 68, 587, 712, 1020, 1310
BstX2I RGATCY 3 cut(s) 213, 1170, 1465
BstXI CCANNNNNNTGG 3 cut(s) 43, 530, 1250
BstYI RGATCY 3 cut(s) 213, 1170, 1465
BsuRI GGCC 1 cut(s) 1218
BtgI CCRYGG 3 cut(s) 36, 1211, 1491
BtrI CACGTC 1 cut(s) 925
BtsCI GGATG 6 cut(s) 329, 376, 519, 1096, 1207, 1428
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 3 cut(s) 66, 572, 1104
Cac8I GCNNGC 1 cut(s) 650
CaiI CAGNNNCTG 1 cut(s) 725
CciI TCATGA 1 cut(s) 103
CfoI GCGC 1 cut(s) 1389
Cfr13I GGNCC 3 cut(s) 698, 1216, 1484
Csp6I GTAC 5 cut(s) 223, 308, 738, 848, 961
CviQI GTAC 5 cut(s) 223, 308, 738, 848, 961
DdeI CTNAG 2 cut(s) 277, 336
DpnI GATC 7 cut(s) 207, 215, 367, 452, 948, 1172, 1467
DpnII GATC 7 cut(s) 205, 213, 365, 450, 946, 1170, 1465
DriI GACNNNNNGTC 1 cut(s) 46
Eam1105I GACNNNNNGTC 1 cut(s) 46
EciI GGCGGA 1 cut(s) 849
Eco130I CCWWGG 3 cut(s) 36, 1364, 1491
Eco47I GGWCC 2 cut(s) 698, 1484
Eco88I CYCGRG 1 cut(s) 1039
EcoNI CCTNNNNNAGG 1 cut(s) 1479
EcoRI GAATTC 1 cut(s) 899
EcoRII CCWGG 2 cut(s) 640, 1431
EcoT14I CCWWGG 3 cut(s) 36, 1364, 1491
ErhI CCWWGG 3 cut(s) 36, 1364, 1491
FaqI GGGAC 2 cut(s) 408, 1123
Fnu4HI GCNGC 5 cut(s) 57, 601, 726, 1034, 1324
FokI GGATG 6 cut(s) 336, 383, 506, 1103, 1194, 1415
Fsp4HI GCNGC 5 cut(s) 57, 601, 726, 1034, 1324
FspBI CTAG 3 cut(s) 984, 1166, 1365
FspI TGCGCA 1 cut(s) 1388
GlaI GCGC 1 cut(s) 1388
GluI GCNGC 5 cut(s) 57, 601, 726, 1034, 1324
GsaI CCCAGC 1 cut(s) 1294
GsuI CTGGAG 5 cut(s) 36, 95, 731, 774, 1454
HaeIII GGCC 1 cut(s) 1218
HapII CCGG 2 cut(s) 87, 561
HhaI GCGC 1 cut(s) 1389
Hin1I GRCGYC 1 cut(s) 952
Hin6I GCGC 1 cut(s) 1387
HinP1I GCGC 1 cut(s) 1387
HincII GTYRAC 1 cut(s) 500
HindII GTYRAC 1 cut(s) 500
HindIII AAGCTT 4 cut(s) 113, 443, 555, 995
HinfI GANTC 8 cut(s) 47, 230, 275, 771, 785, 853, 968, 1277
HpaII CCGG 2 cut(s) 87, 561
HphI GGTGA 2 cut(s) 391, 811
Hpy166II GTNNAC 4 cut(s) 165, 491, 500, 1487
Hpy8I GTNNAC 4 cut(s) 165, 491, 500, 1487
Hpy99I CGWCG 3 cut(s) 489, 698, 954
HpyAV CCTTC 4 cut(s) 603, 1326, 1412, 1433
HpyCH4III ACNGT 7 cut(s) 100, 345, 497, 567, 737, 838, 1425
HpyCH4IV ACGT 3 cut(s) 484, 924, 952
HpyCH4V TGCA 9 cut(s) 173, 197, 327, 603, 766, 911, 1036, 1326, 1458
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 725, 917
HpyF3I CTNAG 2 cut(s) 277, 336
HpySE526I ACGT 3 cut(s) 484, 924, 952
Hsp92I GRCGYC 1 cut(s) 952
HspAI GCGC 1 cut(s) 1387
Kpn2I TCCGGA 1 cut(s) 560
Kzo9I GATC 7 cut(s) 205, 213, 365, 450, 946, 1170, 1465
LmnI GCTCC 1 cut(s) 631
Lsp1109I GCAGC 5 cut(s) 68, 587, 712, 1020, 1310
LweI GCATC 4 cut(s) 273, 314, 712, 893
MaeI CTAG 3 cut(s) 984, 1166, 1365
MaeII ACGT 3 cut(s) 484, 924, 952
MaeIII GTNAC 4 cut(s) 61, 525, 799, 1245
MalI GATC 7 cut(s) 207, 215, 367, 452, 948, 1172, 1467
MboI GATC 7 cut(s) 205, 213, 365, 450, 946, 1170, 1465
MboII GAAGA 5 cut(s) 506, 606, 848, 1226, 1329
MflI RGATCY 3 cut(s) 213, 1170, 1465
MhlI GDGCHC 3 cut(s) 273, 538, 1258
MlyI GAGTC 4 cut(s) 56, 239, 269, 794
MroI TCCGGA 1 cut(s) 560
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 3 cut(s) 399, 873, 1119
MslI CAYNNNNRTG 2 cut(s) 41, 1366
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 2 cut(s) 87, 561
MspR9I CCNGG 2 cut(s) 642, 1433
MvaI CCWGG 2 cut(s) 642, 1433
MwoI GCNNNNNNNGC 3 cut(s) 179, 725, 917
NcoI CCATGG 2 cut(s) 36, 1491
NdeII GATC 7 cut(s) 205, 213, 365, 450, 946, 1170, 1465
NlaIV GGNNCC 4 cut(s) 215, 535, 1217, 1255
NmeAIII GCCGAG 1 cut(s) 520
NmuCI GTSAC 2 cut(s) 61, 799
NsbI TGCGCA 1 cut(s) 1388
NspI RCATGY 2 cut(s) 173, 911
OliI CACNNNNGTG 1 cut(s) 1366
PagI TCATGA 1 cut(s) 103
PcsI WCGNNNNNNNCGW 2 cut(s) 702, 1294
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 4 cut(s) 771, 853, 968, 1277
PfoI TCCNGGA 1 cut(s) 1431
PkrI GCNGC 5 cut(s) 58, 602, 727, 1035, 1325
PleI GAGTC 4 cut(s) 55, 238, 269, 793
PpsI GAGTC 4 cut(s) 55, 238, 269, 793
PsiI TTATAA 3 cut(s) 684, 1028, 1407
Psp6I CCWGG 2 cut(s) 640, 1431
PspFI CCCAGC 1 cut(s) 1290
PspGI CCWGG 2 cut(s) 640, 1431
PspN4I GGNNCC 4 cut(s) 215, 535, 1217, 1255
PspPI GGNCC 3 cut(s) 698, 1216, 1484
PstNI CAGNNNCTG 1 cut(s) 725
PsuI RGATCY 3 cut(s) 213, 1170, 1465
RsaI GTAC 5 cut(s) 224, 309, 739, 849, 962
RsaNI GTAC 5 cut(s) 223, 308, 738, 848, 961
RseI CAYNNNNRTG 2 cut(s) 41, 1366
SaqAI TTAA 3 cut(s) 399, 873, 1119
SatI GCNGC 5 cut(s) 57, 601, 726, 1034, 1324
Sau3AI GATC 7 cut(s) 205, 213, 365, 450, 946, 1170, 1465
Sau96I GGNCC 3 cut(s) 698, 1216, 1484
SchI GAGTC 4 cut(s) 56, 239, 269, 794
ScrFI CCNGG 2 cut(s) 642, 1433
SduI GDGCHC 3 cut(s) 273, 538, 1258
SfaNI GCATC 4 cut(s) 273, 314, 712, 893
SinI GGWCC 2 cut(s) 698, 1484
SmiMI CAYNNNNRTG 2 cut(s) 41, 1366
SmlI CTYRAG 4 cut(s) 398, 446, 548, 812
SmoI CTYRAG 4 cut(s) 398, 446, 548, 812
SsiI CCGC 3 cut(s) 295, 797, 860
SspMI CTAG 3 cut(s) 984, 1166, 1365
StyD4I CCNGG 2 cut(s) 640, 1431
StyI CCWWGG 3 cut(s) 36, 1364, 1491
TaaI ACNGT 7 cut(s) 100, 345, 497, 567, 737, 838, 1425
TaiI ACGT 3 cut(s) 487, 927, 955
TaqI TCGA 4 cut(s) 254, 574, 949, 1297
TatI WGTACW 1 cut(s) 847
TfiI GAWTC 4 cut(s) 771, 853, 968, 1277
Tru1I TTAA 3 cut(s) 399, 873, 1119
Tru9I TTAA 3 cut(s) 399, 873, 1119
TscAI CASTG 3 cut(s) 66, 572, 1104
TseFI GTSAC 2 cut(s) 61, 799
TseI GCWGC 5 cut(s) 56, 600, 725, 1033, 1323
Tsp45I GTSAC 2 cut(s) 61, 799
TspDTI ATGAA 6 cut(s) 92, 585, 668, 1308, 1417, 1431
TspGWI ACGGA 1 cut(s) 711
TspRI CASTG 3 cut(s) 66, 572, 1104
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 2 cut(s) 698, 1484
XagI CCTNNNNNAGG 1 cut(s) 1479
XapI RAATTY 6 cut(s) 68, 176, 383, 806, 899, 1103
XceI RCATGY 2 cut(s) 173, 911
XmaJI CCTAGG 1 cut(s) 1364
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 3 cut(s) 984, 1166, 1365
ZraI GACGTC 1 cut(s) 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.