Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 819 |
| AarI | CACCTGC | 1 cut(s) | 979 |
| Acc16I | TGCGCA | 1 cut(s) | 1999 |
| Acc36I | ACCTGC | 1 cut(s) | 979 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 128, 2281 |
| AccI | GTMKAC | 4 cut(s) | 417, 2439, 2482, 2592 |
| AccII | CGCG | 6 cut(s) | 474, 955, 1174, 1308, 2127, 2476 |
| AccIII | TCCGGA | 2 cut(s) | 1048, 2500 |
| AciI | CCGC | 7 cut(s) | 147, 1172, 1584, 2020, 2125, 2474, 3071 |
| AclI | AACGTT | 1 cut(s) | 2087 |
| AclWI | GGATC | 6 cut(s) | 824, 1646, 1812, 2348, 2570, 2940 |
| AcoI | YGGCCR | 1 cut(s) | 562 |
| AcsI | RAATTY | 6 cut(s) | 374, 626, 957, 1614, 2729, 3007 |
| AcuI | CTGAAG | 3 cut(s) | 669, 744, 2709 |
| AcvI | CACGTG | 1 cut(s) | 3063 |
| AcyI | GRCGYC | 1 cut(s) | 3036 |
| AdeI | CACNNNGTG | 1 cut(s) | 2281 |
| AfaI | GTAC | 6 cut(s) | 221, 932, 1700, 1745, 2876, 3001 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 128, 713, 725, 1399, 2281, 2453 |
| AflIII | ACRYGT | 4 cut(s) | 283, 784, 2331, 2545 |
| AjiI | CACGTC | 5 cut(s) | 106, 284, 785, 2260, 2546 |
| AjnI | CCWGG | 6 cut(s) | 306, 790, 867, 1425, 1442, 2801 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2318, 2350 |
| AleI | CACNNNNGTG | 3 cut(s) | 783, 2252, 2720 |
| Alw21I | GWGCWC | 9 cut(s) | 324, 462, 953, 1008, 1347, 2149, 2401, 2415, 3068 |
| Alw26I | GTCTC | 6 cut(s) | 103, 215, 436, 1380, 1442, 2750 |
| Alw44I | GTGCAC | 2 cut(s) | 949, 1004 |
| AlwI | GGATC | 6 cut(s) | 824, 1646, 1812, 2348, 2570, 2940 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 176 |
| Ama87I | CYCGRG | 3 cut(s) | 425, 2164, 2227 |
| Aor13HI | TCCGGA | 2 cut(s) | 1048, 2500 |
| AoxI | GGCC | 3 cut(s) | 562, 1423, 2388 |
| ApaLI | GTGCAC | 2 cut(s) | 949, 1004 |
| ApeKI | GCWGC | 4 cut(s) | 292, 555, 897, 2910 |
| ApoI | RAATTY | 6 cut(s) | 374, 626, 957, 1614, 2729, 3007 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1256, 1288 |
| AseI | ATTAAT | 1 cut(s) | 2763 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 627, 1968, 2561, 2732 |
| AspLEI | GCGC | 3 cut(s) | 1176, 1352, 2000 |
| AspS9I | GGNCC | 4 cut(s) | 716, 1046, 1423, 2799 |
| AsuC2I | CCSGG | 3 cut(s) | 1802, 2228, 2229 |
| AsuHPI | GGTGA | 4 cut(s) | 39, 1274, 1768, 2707 |
| AvaI | CYCGRG | 3 cut(s) | 425, 2164, 2227 |
| AvaII | GGWCC | 3 cut(s) | 716, 1046, 2799 |
| BaeGI | GKGCMC | 3 cut(s) | 868, 953, 1008 |
| BalI | TGGCCA | 1 cut(s) | 564 |
| BanII | GRGCYC | 3 cut(s) | 462, 1347, 2415 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2682, 2714 |
| BbrPI | CACGTG | 1 cut(s) | 3063 |
| Bbv12I | GWGCWC | 9 cut(s) | 324, 462, 953, 1008, 1347, 2149, 2401, 2415, 3068 |
| BbvCI | CCTCAGC | 1 cut(s) | 2942 |
| BbvI | GCAGC | 4 cut(s) | 279, 542, 884, 2897 |
| BceAI | ACGGC | 2 cut(s) | 724, 2692 |
| BcgI | CGANNNNNNTGC | 5 cut(s) | 2102, 2136, 2821, 2855, 3045 |
| BciT130I | CCWGG | 6 cut(s) | 308, 792, 869, 1427, 1444, 2803 |
| BciVI | GTATCC | 1 cut(s) | 2860 |
| BclI | TGATCA | 1 cut(s) | 1773 |
| BcnI | CCSGG | 3 cut(s) | 1802, 2228, 2229 |
| BcoDI | GTCTC | 6 cut(s) | 103, 215, 436, 1380, 1442, 2750 |
| BfaI | CTAG | 6 cut(s) | 243, 824, 834, 1416, 2208, 2796 |
| BfmI | CTRYAG | 1 cut(s) | 1191 |
| BfuAI | ACCTGC | 1 cut(s) | 979 |
| BfuI | GTATCC | 1 cut(s) | 2860 |
| BglII | AGATCT | 1 cut(s) | 697 |
| BisI | GCNGC | 6 cut(s) | 293, 556, 898, 2125, 2474, 2911 |
| BlpI | GCTNAGC | 1 cut(s) | 1346 |
| BlsI | GCNGC | 6 cut(s) | 294, 557, 899, 2126, 2475, 2912 |
| Bme1390I | CCNGG | 9 cut(s) | 308, 792, 869, 1427, 1444, 1802, 2228, 2229, 2803 |
| Bme18I | GGWCC | 3 cut(s) | 716, 1046, 2799 |
| BmeT110I | CYCGRG | 3 cut(s) | 425, 2164, 2227 |
| BmgBI | CACGTC | 5 cut(s) | 106, 284, 785, 2260, 2546 |
| BmgT120I | GGNCC | 4 cut(s) | 716, 1046, 1423, 2799 |
| BmrFI | CCNGG | 9 cut(s) | 308, 792, 869, 1427, 1444, 1802, 2228, 2229, 2803 |
| BmrI | ACTGGG | 3 cut(s) | 532, 2715, 2911 |
| BmsI | GCATC | 6 cut(s) | 293, 1368, 1948, 2009, 2608, 2688 |
| BmuI | ACTGGG | 3 cut(s) | 532, 2715, 2911 |
| BpmI | CTGGAG | 2 cut(s) | 92, 105 |
| Bpu10I | CCTNAGC | 2 cut(s) | 482, 2942 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1346 |
| BpuMI | CCSGG | 3 cut(s) | 1802, 2228, 2229 |
| Bsa29I | ATCGAT | 2 cut(s) | 2574, 2613 |
| BsaAI | YACGTR | 5 cut(s) | 620, 2104, 2486, 2532, 3063 |
| BsaHI | GRCGYC | 1 cut(s) | 3036 |
| BsaI | GGTCTC | 1 cut(s) | 436 |
| BsaJI | CCNNGG | 7 cut(s) | 435, 768, 791, 867, 1443, 2227, 2951 |
| BsaWI | WCCGGW | 4 cut(s) | 49, 346, 1048, 2500 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 1676, 1706, 3052 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 128, 713, 725, 1399, 2281, 2453 |
| Bse118I | RCCGGY | 1 cut(s) | 2263 |
| Bse1I | ACTGG | 8 cut(s) | 88, 527, 2086, 2143, 2458, 2710, 2718, 2906 |
| Bse3DI | GCAATG | 1 cut(s) | 2267 |
| BseAI | TCCGGA | 2 cut(s) | 1048, 2500 |
| BseBI | CCWGG | 6 cut(s) | 308, 792, 869, 1427, 1444, 2803 |
| BseCI | ATCGAT | 2 cut(s) | 2574, 2613 |
| BseDI | CCNNGG | 7 cut(s) | 435, 768, 791, 867, 1443, 2227, 2951 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 128, 713, 725, 1399, 2281, 2453 |
| BseMI | GCAATG | 1 cut(s) | 2267 |
| BseMII | CTCAG | 5 cut(s) | 1360, 1495, 1545, 1670, 2956 |
| BseNI | ACTGG | 8 cut(s) | 88, 527, 2086, 2143, 2458, 2710, 2718, 2906 |
| BseSI | GKGCMC | 3 cut(s) | 868, 953, 1008 |
| BseXI | GCAGC | 4 cut(s) | 279, 542, 884, 2897 |
| BseYI | CCCAGC | 1 cut(s) | 2653 |
| BsgI | GTGCAG | 1 cut(s) | 278 |
| Bsh1236I | CGCG | 6 cut(s) | 474, 955, 1174, 1308, 2127, 2476 |
| BshFI | GGCC | 3 cut(s) | 564, 1425, 2390 |
| BshVI | ATCGAT | 2 cut(s) | 2574, 2613 |
| BsiHKAI | GWGCWC | 9 cut(s) | 324, 462, 953, 1008, 1347, 2149, 2401, 2415, 3068 |
| BsiHKCI | CYCGRG | 3 cut(s) | 425, 2164, 2227 |
| BsiSI | CCGG | 8 cut(s) | 50, 347, 1049, 1802, 1955, 2228, 2264, 2501 |
| BslFI | GGGAC | 5 cut(s) | 239, 294, 382, 1391, 1784 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 128, 713, 725, 1399, 2281, 2453 |
| BsmAI | GTCTC | 6 cut(s) | 103, 215, 436, 1380, 1442, 2750 |
| BsmBI | CGTCTC | 1 cut(s) | 215 |
| BsmFI | GGGAC | 5 cut(s) | 239, 294, 382, 1391, 1784 |
| BsmI | GAATGC | 2 cut(s) | 1312, 1991 |
| BsnI | GGCC | 3 cut(s) | 564, 1425, 2390 |
| Bso31I | GGTCTC | 1 cut(s) | 436 |
| BsoBI | CYCGRG | 3 cut(s) | 425, 2164, 2227 |
| Bsp13I | TCCGGA | 2 cut(s) | 1048, 2500 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1346 |
| BspACI | CCGC | 7 cut(s) | 147, 1172, 1584, 2020, 2125, 2474, 3071 |
| BspANI | GGCC | 3 cut(s) | 564, 1425, 2390 |
| BspCNI | CTCAG | 5 cut(s) | 1359, 1494, 1546, 1671, 2955 |
| BspDI | ATCGAT | 2 cut(s) | 2574, 2613 |
| BspEI | TCCGGA | 2 cut(s) | 1048, 2500 |
| BspFNI | CGCG | 6 cut(s) | 474, 955, 1174, 1308, 2127, 2476 |
| BspMAI | CTGCAG | 1 cut(s) | 1195 |
| BspMI | ACCTGC | 1 cut(s) | 979 |
| BspPI | GGATC | 6 cut(s) | 824, 1646, 1812, 2348, 2570, 2940 |
| BspQI | GCTCTTC | 1 cut(s) | 1444 |
| BspTNI | GGTCTC | 1 cut(s) | 436 |
| BsrDI | GCAATG | 1 cut(s) | 2267 |
| BsrFI | RCCGGY | 1 cut(s) | 2263 |
| BsrI | ACTGG | 8 cut(s) | 88, 527, 2086, 2143, 2458, 2710, 2718, 2906 |
| BssAI | RCCGGY | 1 cut(s) | 2263 |
| BssECI | CCNNGG | 7 cut(s) | 435, 768, 791, 867, 1443, 2227, 2951 |
| BssNAI | GTATAC | 1 cut(s) | 418 |
| BssNI | GRCGYC | 1 cut(s) | 3036 |
| BssT1I | CCWWGG | 1 cut(s) | 768 |
| Bst1107I | GTATAC | 1 cut(s) | 418 |
| Bst2UI | CCWGG | 6 cut(s) | 308, 792, 869, 1427, 1444, 2803 |
| Bst4CI | ACNGT | 3 cut(s) | 97, 1070, 2773 |
| Bst6I | CTCTTC | 3 cut(s) | 1191, 1444, 2166 |
| BstACI | GRCGYC | 1 cut(s) | 3036 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 176 |
| BstBAI | YACGTR | 5 cut(s) | 620, 2104, 2486, 2532, 3063 |
| BstC8I | GCNNGC | 9 cut(s) | 472, 798, 895, 953, 1166, 1310, 1343, 2265, 2415 |
| BstDEI | CTNAG | 7 cut(s) | 482, 1241, 1346, 1481, 1554, 1679, 2942 |
| BstDSI | CCRYGG | 2 cut(s) | 435, 2951 |
| BstFNI | CGCG | 6 cut(s) | 474, 955, 1174, 1308, 2127, 2476 |
| BstHHI | GCGC | 3 cut(s) | 1176, 1352, 2000 |
| BstMAI | GTCTC | 6 cut(s) | 103, 215, 436, 1380, 1442, 2750 |
| BstNI | CCWGG | 6 cut(s) | 308, 792, 869, 1427, 1444, 2803 |
| BstNSI | RCATGY | 5 cut(s) | 170, 897, 1693, 2335, 2360 |
| BstSCI | CCNGG | 9 cut(s) | 306, 790, 867, 1425, 1442, 1800, 2226, 2227, 2801 |
| BstSFI | CTRYAG | 1 cut(s) | 1191 |
| BstSLI | GKGCMC | 3 cut(s) | 868, 953, 1008 |
| BstSNI | TACGTA | 1 cut(s) | 2532 |
| BstUI | CGCG | 6 cut(s) | 474, 955, 1174, 1308, 2127, 2476 |
| BstV1I | GCAGC | 4 cut(s) | 279, 542, 884, 2897 |
| BstX2I | RGATCY | 2 cut(s) | 697, 1651 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2011 |
| BstYI | RGATCY | 2 cut(s) | 697, 1651 |
| BstZ17I | GTATAC | 1 cut(s) | 418 |
| Bsu15I | ATCGAT | 2 cut(s) | 2574, 2613 |
| BsuI | GTATCC | 1 cut(s) | 2860 |
| BsuRI | GGCC | 3 cut(s) | 564, 1425, 2390 |
| BsuTUI | ATCGAT | 2 cut(s) | 2574, 2613 |
| BtgI | CCRYGG | 2 cut(s) | 435, 2951 |
| BtrI | CACGTC | 5 cut(s) | 106, 284, 785, 2260, 2546 |
| BtsI | GCAGTG | 2 cut(s) | 63, 2149 |
| BtsIMutI | CAGTG | 8 cut(s) | 63, 81, 1323, 1676, 2136, 2149, 2725, 2769 |
| BveI | ACCTGC | 1 cut(s) | 979 |
| Cac8I | GCNNGC | 9 cut(s) | 472, 798, 895, 953, 1166, 1310, 1343, 2265, 2415 |
| CaiI | CAGNNNCTG | 1 cut(s) | 176 |
| CfoI | GCGC | 3 cut(s) | 1176, 1352, 2000 |
| Cfr10I | RCCGGY | 1 cut(s) | 2263 |
| Cfr13I | GGNCC | 4 cut(s) | 716, 1046, 1423, 2799 |
| Cfr9I | CCCGGG | 1 cut(s) | 2227 |
| ClaI | ATCGAT | 2 cut(s) | 2574, 2613 |
| CseI | GACGC | 6 cut(s) | 663, 1157, 1320, 1990, 2853, 3025 |
| CsiI | ACCWGGT | 1 cut(s) | 2801 |
| Csp6I | GTAC | 6 cut(s) | 220, 931, 1699, 1744, 2875, 3000 |
| CviQI | GTAC | 6 cut(s) | 220, 931, 1699, 1744, 2875, 3000 |
| DdeI | CTNAG | 7 cut(s) | 482, 1241, 1346, 1481, 1554, 1679, 2942 |
| DraIII | CACNNNGTG | 1 cut(s) | 2281 |
| EaeI | YGGCCR | 1 cut(s) | 562 |
| Eam1104I | CTCTTC | 3 cut(s) | 1191, 1444, 2166 |
| EarI | CTCTTC | 3 cut(s) | 1191, 1444, 2166 |
| EciI | GGCGGA | 1 cut(s) | 136 |
| Ecl136II | GAGCTC | 3 cut(s) | 460, 1345, 2413 |
| Eco105I | TACGTA | 1 cut(s) | 2532 |
| Eco130I | CCWWGG | 1 cut(s) | 768 |
| Eco24I | GRGCYC | 3 cut(s) | 462, 1347, 2415 |
| Eco31I | GGTCTC | 1 cut(s) | 436 |
| Eco32I | GATATC | 1 cut(s) | 1548 |
| Eco47I | GGWCC | 3 cut(s) | 716, 1046, 2799 |
| Eco53kI | GAGCTC | 3 cut(s) | 460, 1345, 2413 |
| Eco57I | CTGAAG | 3 cut(s) | 669, 744, 2709 |
| Eco72I | CACGTG | 1 cut(s) | 3063 |
| Eco88I | CYCGRG | 3 cut(s) | 425, 2164, 2227 |
| EcoICRI | GAGCTC | 3 cut(s) | 460, 1345, 2413 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2799 |
| EcoRI | GAATTC | 2 cut(s) | 957, 3007 |
| EcoRII | CCWGG | 6 cut(s) | 306, 790, 867, 1425, 1442, 2801 |
| EcoRV | GATATC | 1 cut(s) | 1548 |
| EcoT14I | CCWWGG | 1 cut(s) | 768 |
| EcoT38I | GRGCYC | 3 cut(s) | 462, 1347, 2415 |
| ErhI | CCWWGG | 1 cut(s) | 768 |
| Esp3I | CGTCTC | 1 cut(s) | 215 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 281, 313, 664, 696, 1171, 1203, 1819, 1851 |
| FaqI | GGGAC | 5 cut(s) | 239, 294, 382, 1391, 1784 |
| FauI | CCCGC | 1 cut(s) | 1577 |
| FauNDI | CATATG | 2 cut(s) | 595, 3018 |
| FbaI | TGATCA | 1 cut(s) | 1773 |
| FblI | GTMKAC | 4 cut(s) | 417, 2439, 2482, 2592 |
| Fnu4HI | GCNGC | 6 cut(s) | 293, 556, 898, 2125, 2474, 2911 |
| FriOI | GRGCYC | 3 cut(s) | 462, 1347, 2415 |
| Fsp4HI | GCNGC | 6 cut(s) | 293, 556, 898, 2125, 2474, 2911 |
| FspBI | CTAG | 6 cut(s) | 243, 824, 834, 1416, 2208, 2796 |
| FspI | TGCGCA | 1 cut(s) | 1999 |
| GlaI | GCGC | 3 cut(s) | 1175, 1351, 1999 |
| GluI | GCNGC | 6 cut(s) | 293, 556, 898, 2125, 2474, 2911 |
| GsaI | CCCAGC | 1 cut(s) | 2657 |
| GsuI | CTGGAG | 2 cut(s) | 92, 105 |
| HaeIII | GGCC | 3 cut(s) | 564, 1425, 2390 |
| HapII | CCGG | 8 cut(s) | 50, 347, 1049, 1802, 1955, 2228, 2264, 2501 |
| HgaI | GACGC | 6 cut(s) | 663, 1157, 1320, 1990, 2853, 3025 |
| HhaI | GCGC | 3 cut(s) | 1176, 1352, 2000 |
| Hin1I | GRCGYC | 1 cut(s) | 3036 |
| Hin6I | GCGC | 3 cut(s) | 1174, 1350, 1998 |
| HinP1I | GCGC | 3 cut(s) | 1174, 1350, 1998 |
| HincII | GTYRAC | 4 cut(s) | 361, 538, 1769, 2440 |
| HindII | GTYRAC | 4 cut(s) | 361, 538, 1769, 2440 |
| HindIII | AAGCTT | 2 cut(s) | 2558, 2604 |
| HpaII | CCGG | 8 cut(s) | 50, 347, 1049, 1802, 1955, 2228, 2264, 2501 |
| HphI | GGTGA | 4 cut(s) | 39, 1274, 1768, 2707 |
| HpyCH4III | ACNGT | 3 cut(s) | 97, 1070, 2773 |
| HpyF3I | CTNAG | 7 cut(s) | 482, 1241, 1346, 1481, 1554, 1679, 2942 |
| Hsp92I | GRCGYC | 1 cut(s) | 3036 |
| HspAI | GCGC | 3 cut(s) | 1174, 1350, 1998 |
| Kpn2I | TCCGGA | 2 cut(s) | 1048, 2500 |
| KroI | GCCGGC | 1 cut(s) | 2263 |
| KroNI | GCCGGC | 1 cut(s) | 2265 |
| Ksp22I | TGATCA | 1 cut(s) | 1773 |
| LguI | GCTCTTC | 1 cut(s) | 1444 |
| LmnI | GCTCC | 3 cut(s) | 457, 465, 1737 |
| Lsp1109I | GCAGC | 4 cut(s) | 279, 542, 884, 2897 |
| LweI | GCATC | 6 cut(s) | 293, 1368, 1948, 2009, 2608, 2688 |
| MabI | ACCWGGT | 1 cut(s) | 2801 |
| MaeI | CTAG | 6 cut(s) | 243, 824, 834, 1416, 2208, 2796 |
| MfeI | CAATTG | 1 cut(s) | 1844 |
| MflI | RGATCY | 2 cut(s) | 697, 1651 |
| MlsI | TGGCCA | 1 cut(s) | 564 |
| MluNI | TGGCCA | 1 cut(s) | 564 |
| MlyI | GAGTC | 6 cut(s) | 221, 1521, 1806, 2312, 2435, 2546 |
| MmeI | TCCRAC | 5 cut(s) | 1679, 1731, 2070, 2590, 3048 |
| Mox20I | TGGCCA | 1 cut(s) | 564 |
| MroI | TCCGGA | 2 cut(s) | 1048, 2500 |
| MroNI | GCCGGC | 1 cut(s) | 2263 |
| MroXI | GAANNNNTTC | 4 cut(s) | 627, 1968, 2561, 2732 |
| MscI | TGGCCA | 1 cut(s) | 564 |
| MseI | TTAA | 9 cut(s) | 6, 378, 732, 1455, 1494, 1661, 1859, 2763, 2784 |
| MslI | CAYNNNNRTG | 4 cut(s) | 783, 2252, 2513, 2720 |
| Msp20I | TGGCCA | 1 cut(s) | 564 |
| MspA1I | CMGCKG | 2 cut(s) | 2252, 3073 |
| MspI | CCGG | 8 cut(s) | 50, 347, 1049, 1802, 1955, 2228, 2264, 2501 |
| MspR9I | CCNGG | 9 cut(s) | 308, 792, 869, 1427, 1444, 1802, 2228, 2229, 2803 |
| MunI | CAATTG | 1 cut(s) | 1844 |
| Mva1269I | GAATGC | 2 cut(s) | 1312, 1991 |
| MvaI | CCWGG | 6 cut(s) | 308, 792, 869, 1427, 1444, 2803 |
| MvnI | CGCG | 6 cut(s) | 474, 955, 1174, 1308, 2127, 2476 |
| NaeI | GCCGGC | 1 cut(s) | 2265 |
| NciI | CCSGG | 3 cut(s) | 1802, 2228, 2229 |
| NdeI | CATATG | 2 cut(s) | 595, 3018 |
| NgoMIV | GCCGGC | 1 cut(s) | 2263 |
| NmuCI | GTSAC | 6 cut(s) | 808, 1018, 1262, 1912, 2099, 2778 |
| NsbI | TGCGCA | 1 cut(s) | 1999 |
| NspI | RCATGY | 5 cut(s) | 170, 897, 1693, 2335, 2360 |
| OliI | CACNNNNGTG | 3 cut(s) | 783, 2252, 2720 |
| PaeI | GCATGC | 1 cut(s) | 897 |
| PaeR7I | CTCGAG | 2 cut(s) | 425, 2164 |
| PaqCI | CACCTGC | 1 cut(s) | 979 |
| PciI | ACATGT | 1 cut(s) | 2331 |
| PciSI | GCTCTTC | 1 cut(s) | 1444 |
| PctI | GAATGC | 2 cut(s) | 1312, 1991 |
| PdiI | GCCGGC | 1 cut(s) | 2265 |
| PdmI | GAANNNNTTC | 4 cut(s) | 627, 1968, 2561, 2732 |
| PfeI | GAWTC | 6 cut(s) | 44, 173, 407, 2598, 2815, 2825 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 128, 2281 |
| PfoI | TCCNGGA | 1 cut(s) | 1800 |
| PkrI | GCNGC | 6 cut(s) | 294, 557, 899, 2126, 2475, 2912 |
| PleI | GAGTC | 6 cut(s) | 221, 1520, 1805, 2311, 2435, 2545 |
| PmaCI | CACGTG | 1 cut(s) | 3063 |
| PmlI | CACGTG | 1 cut(s) | 3063 |
| PpsI | GAGTC | 6 cut(s) | 221, 1520, 1805, 2311, 2435, 2545 |
| Ppu21I | YACGTR | 5 cut(s) | 620, 2104, 2486, 2532, 3063 |
| PpuMI | RGGWCCY | 1 cut(s) | 2799 |
| PscI | ACATGT | 1 cut(s) | 2331 |
| PshBI | ATTAAT | 1 cut(s) | 2763 |
| PsiI | TTATAA | 1 cut(s) | 819 |
| Psp124BI | GAGCTC | 3 cut(s) | 462, 1347, 2415 |
| Psp1406I | AACGTT | 1 cut(s) | 2087 |
| Psp5II | RGGWCCY | 1 cut(s) | 2799 |
| Psp6I | CCWGG | 6 cut(s) | 306, 790, 867, 1425, 1442, 2801 |
| PspCI | CACGTG | 1 cut(s) | 3063 |
| PspFI | CCCAGC | 1 cut(s) | 2653 |
| PspGI | CCWGG | 6 cut(s) | 306, 790, 867, 1425, 1442, 2801 |
| PspPI | GGNCC | 4 cut(s) | 716, 1046, 1423, 2799 |
| PspPPI | RGGWCCY | 1 cut(s) | 2799 |
| PspXI | VCTCGAGB | 2 cut(s) | 425, 2164 |
| PstI | CTGCAG | 1 cut(s) | 1195 |
| PstNI | CAGNNNCTG | 1 cut(s) | 176 |
| PsuI | RGATCY | 2 cut(s) | 697, 1651 |
| PvuII | CAGCTG | 1 cut(s) | 2252 |
| RsaI | GTAC | 6 cut(s) | 221, 932, 1700, 1745, 2876, 3001 |
| RsaNI | GTAC | 6 cut(s) | 220, 931, 1699, 1744, 2875, 3000 |
| RseI | CAYNNNNRTG | 4 cut(s) | 783, 2252, 2513, 2720 |
| SacI | GAGCTC | 3 cut(s) | 462, 1347, 2415 |
| SalI | GTCGAC | 1 cut(s) | 2438 |
| SapI | GCTCTTC | 1 cut(s) | 1444 |
| SaqAI | TTAA | 9 cut(s) | 6, 378, 732, 1455, 1494, 1661, 1859, 2763, 2784 |
| SatI | GCNGC | 6 cut(s) | 293, 556, 898, 2125, 2474, 2911 |
| Sau96I | GGNCC | 4 cut(s) | 716, 1046, 1423, 2799 |
| SchI | GAGTC | 6 cut(s) | 221, 1521, 1806, 2312, 2435, 2546 |
| ScrFI | CCNGG | 9 cut(s) | 308, 792, 869, 1427, 1444, 1802, 2228, 2229, 2803 |
| SexAI | ACCWGGT | 1 cut(s) | 2801 |
| SfaNI | GCATC | 6 cut(s) | 293, 1368, 1948, 2009, 2608, 2688 |
| SfcI | CTRYAG | 1 cut(s) | 1191 |
| Sfr274I | CTCGAG | 2 cut(s) | 425, 2164 |
| SinI | GGWCC | 3 cut(s) | 716, 1046, 2799 |
| SlaI | CTCGAG | 2 cut(s) | 425, 2164 |
| SmaI | CCCGGG | 1 cut(s) | 2229 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 783, 2252, 2513, 2720 |
| SmlI | CTYRAG | 2 cut(s) | 425, 2164 |
| SmoI | CTYRAG | 2 cut(s) | 425, 2164 |
| SnaBI | TACGTA | 1 cut(s) | 2532 |
| SphI | GCATGC | 1 cut(s) | 897 |
| SsiI | CCGC | 7 cut(s) | 147, 1172, 1584, 2020, 2125, 2474, 3071 |
| SspI | AATATT | 1 cut(s) | 1520 |
| SspMI | CTAG | 6 cut(s) | 243, 824, 834, 1416, 2208, 2796 |
| SstI | GAGCTC | 3 cut(s) | 462, 1347, 2415 |
| StyD4I | CCNGG | 9 cut(s) | 306, 790, 867, 1425, 1442, 1800, 2226, 2227, 2801 |
| StyI | CCWWGG | 1 cut(s) | 768 |
| TaaI | ACNGT | 3 cut(s) | 97, 1070, 2773 |
| TaqII | GACCGA | 1 cut(s) | 704 |
| TatI | WGTACW | 1 cut(s) | 930 |
| TauI | GCSGC | 2 cut(s) | 2127, 2476 |
| TfiI | GAWTC | 6 cut(s) | 44, 173, 407, 2598, 2815, 2825 |
| Tru1I | TTAA | 9 cut(s) | 6, 378, 732, 1455, 1494, 1661, 1859, 2763, 2784 |
| Tru9I | TTAA | 9 cut(s) | 6, 378, 732, 1455, 1494, 1661, 1859, 2763, 2784 |
| TscAI | CASTG | 8 cut(s) | 63, 88, 1323, 1683, 2143, 2149, 2725, 2776 |
| TseFI | GTSAC | 6 cut(s) | 808, 1018, 1262, 1912, 2099, 2778 |
| TseI | GCWGC | 4 cut(s) | 292, 555, 897, 2910 |
| Tsp45I | GTSAC | 6 cut(s) | 808, 1018, 1262, 1912, 2099, 2778 |
| TspDTI | ATGAA | 7 cut(s) | 623, 1236, 1281, 1485, 2091, 2497, 3005 |
| TspGWI | ACGGA | 4 cut(s) | 452, 795, 2610, 2940 |
| TspMI | CCCGGG | 1 cut(s) | 2227 |
| TspRI | CASTG | 8 cut(s) | 63, 88, 1323, 1683, 2143, 2149, 2725, 2776 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 128, 2281 |
| VneI | GTGCAC | 2 cut(s) | 949, 1004 |
| VpaK11BI | GGWCC | 3 cut(s) | 716, 1046, 2799 |
| VspI | ATTAAT | 1 cut(s) | 2763 |
| XapI | RAATTY | 6 cut(s) | 374, 626, 957, 1614, 2729, 3007 |
| XceI | RCATGY | 5 cut(s) | 170, 897, 1693, 2335, 2360 |
| XhoI | CTCGAG | 2 cut(s) | 425, 2164 |
| XmaI | CCCGGG | 1 cut(s) | 2227 |
| XmiI | GTMKAC | 4 cut(s) | 417, 2439, 2482, 2592 |
| XmnI | GAANNNNTTC | 4 cut(s) | 627, 1968, 2561, 2732 |
| XspI | CTAG | 6 cut(s) | 243, 824, 834, 1416, 2208, 2796 |