Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035717.1

Orthogroup ID

OG0001845

Physical Location & Seq

Genomic Coordinates Forward (+)

901 .. 1491

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035717.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggtcaagacagtttacttgtttggatttcccactgtggagtctccagaagcagtgacaaaatttctggaggagtatactggagaaggaactgttatctctgtgaatgttcttcctccaaaagatggcgcatcaagatcatctgccatagttgaattcacaactgcagaatgtgctgaaataataattccattagccgataatcgatgcctgtggtatggagagtcttatctgaaagctcgagaatggaagcgtgacttggcaccgaaatcaaaagtcttggaggaacttgtgacacttcactttggatgcaagatatctgaggagatgttttcggtgctttggacaaaatcagatgtttctgtgacatttgggatgaaactgaaaaatgtgcacttgtctttctcctatgattgtgctaaatacaagcttgagctcccatttgacactatttgccggattgagctgcgttgtccacttggtcagttttcaaagtttcttctcatccaggtttgtcaaagttcttactgctcgattcccctattttgctgctcctcatatatcgtttatatgcttgtatttaaatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

196

Amino Acids

22.26

Weight (kDa)

6.16

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13760 FvH4_4g33441 FvH4_4g33445
malus_domestica	MD13G1019400.v1.1 MD13G1041200.v1.1 MD16G1017600.v1.1
prunus_persica	Prupe.1G132100_v2.0.a1 Prupe.1G132200_v2.0.a1 Prupe.1G132200_v2.0.a1 Prupe.1G332600_v2.0.a1 Prupe.1G332600_v2.0.a1 Prupe.1G332600_v2.0.a1 Prupe.1G334500_v2.0.a1 Prupe.1G334500_v2.0.a1 Prupe.1G334500_v2.0.a1
pyrus_communis	pycom13g01650 pycom13g03550
rosa_chinensis	RchiOBHm_Chr2g0166231 RchiOBHm_Chr4g0442711 RchiOBHm_Chr4g0442751
rosa_laevigata	RLG00000005987 RLG00000005988 RLG00000005989 RLG00000021600
rosa_multiflora	Rmu_co8517261.1_g000001 Rmu_sc0018648.1_g000004 Rmu_sc0035717.1_g000001 Rmu_ssc0000204.1_g000023
rosa_roxburghii	Rroxscaffold_2G00085060 Rroxscaffold_5G00383520 Rroxscaffold_5G00383530 Rroxscaffold_5G00383540
rosa_rugosa	Rorug02G0521500 Rorug02G0521600
rosa_samantha	Rh2AG587500 Rh2BG599400 Rh2CG569900 Rh2DG609500 Rh4AG395000 Rh4AG395300 Rh4BG408000 Rh4CG423700 Rh4DG402000 Rh4DG402200
rosa_wichuraiana	Rw2G048970 Rw4G034140 Rw4G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	262
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	62, 155
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	155, 492
AjnI	CCWGG	1 cut(s)	507
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	4 cut(s)	239, 430, 436, 466
AluI	AGCT	4 cut(s)	239, 430, 436, 466
Alw21I	GWGCWC	2 cut(s)	396, 438
Alw26I	GTCTC	1 cut(s)	48
Alw44I	GTGCAC	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	240
ApaLI	GTGCAC	1 cut(s)	392
ApeKI	GCWGC	2 cut(s)	466, 549
ApoI	RAATTY	2 cut(s)	62, 155
AspLEI	GCGC	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	240
BaeGI	GKGCMC	1 cut(s)	396
BanI	GGYRCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	396, 438
BbvI	GCAGC	2 cut(s)	453, 536
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	589
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	2 cut(s)	467, 550
BlsI	GCNGC	2 cut(s)	468, 551
Bme1390I	CCNGG	1 cut(s)	509
BmeT110I	CYCGRG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	3 cut(s)	140, 197, 299
BpmI	CTGGAG	3 cut(s)	30, 89, 102
BpuEI	CTTGAG	1 cut(s)	452
Bsa29I	ATCGAT	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	205
BseGI	GGATG	3 cut(s)	314, 381, 504
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	3 cut(s)	86, 338, 544
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	453, 536
BshNI	GGYRCC	1 cut(s)	262
BshVI	ATCGAT	1 cut(s)	205
BsiHKAI	GWGCWC	2 cut(s)	396, 438
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	2 cut(s)	396, 438
Bsp143I	GATC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	313
BspDI	ATCGAT	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	264
BspMAI	CTGCAG	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	137
BssNAI	GTATAC	1 cut(s)	78
Bst1107I	GTATAC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	3 cut(s)	13, 37, 94
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	3 cut(s)	314, 381, 504
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	1 cut(s)	140
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	453, 536
BstZ17I	GTATAC	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	205
BsuTUI	ATCGAT	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	314, 381, 504
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	33, 60
CfoI	GCGC	1 cut(s)	131
ClaI	ATCGAT	1 cut(s)	205
CviJI	RGCY	5 cut(s)	197, 239, 430, 436, 466
CviKI_1	RGCY	5 cut(s)	197, 239, 430, 436, 466
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
DraI	TTTAAA	1 cut(s)	583
Ecl136II	GAGCTC	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	438
Eco32I	GATATC	1 cut(s)	318
Eco53kI	GAGCTC	1 cut(s)	436
Eco88I	CYCGRG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	436
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	438
FaiI	YATR	8 cut(s)	78, 149, 219, 411, 559, 561, 570, 572
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	2 cut(s)	467, 550
FokI	GGATG	3 cut(s)	321, 388, 491
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	2 cut(s)	467, 550
FspBI	CTAG	1 cut(s)	589
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	2 cut(s)	467, 550
GsuI	CTGGAG	3 cut(s)	30, 89, 102
HapII	CCGG	1 cut(s)	457
HhaI	GCGC	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	3 cut(s)	41, 224, 535
HpaII	CCGG	1 cut(s)	457
Hpy166II	GTNNAC	4 cut(s)	16, 78, 394, 476
Hpy188I	TCNGA	3 cut(s)	234, 322, 355
Hpy188III	TCNNGA	5 cut(s)	7, 47, 68, 135, 242
Hpy8I	GTNNAC	4 cut(s)	16, 78, 394, 476
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	3 cut(s)	13, 37, 94
HpyCH4V	TGCA	3 cut(s)	167, 312, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	321
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	137
LmnI	GCTCC	2 cut(s)	441, 557
LpnPI	CCDG	7 cut(s)	53, 60, 66, 224, 470, 494, 521
Lsp1109I	GCAGC	2 cut(s)	453, 536
LweI	GCATC	3 cut(s)	140, 197, 299
MaeI	CTAG	1 cut(s)	589
MaeIII	GTNAC	4 cut(s)	55, 254, 292, 364
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	2 cut(s)	104, 491
MhlI	GDGCHC	2 cut(s)	396, 438
MluCI	AATT	3 cut(s)	62, 155, 186
MlyI	GAGTC	2 cut(s)	50, 233
MnlI	CCTC	5 cut(s)	64, 126, 277, 316, 565
MseI	TTAA	1 cut(s)	582
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	4 cut(s)	55, 254, 292, 364
PaeR7I	CTCGAG	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	535
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	468, 551
PleI	GAGTC	2 cut(s)	49, 232
PpsI	GAGTC	2 cut(s)	49, 232
Psp124BI	GAGCTC	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	264
PstI	CTGCAG	1 cut(s)	169
SacI	GAGCTC	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	2 cut(s)	467, 550
Sau3AI	GATC	1 cut(s)	137
SchI	GAGTC	2 cut(s)	50, 233
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	2 cut(s)	396, 438
SetI	ASST	5 cut(s)	241, 432, 438, 468, 513
SfaNI	GCATC	3 cut(s)	140, 197, 299
SfcI	CTRYAG	1 cut(s)	165
Sfr274I	CTCGAG	1 cut(s)	240
SlaI	CTCGAG	1 cut(s)	240
SmiI	ATTTAAAT	1 cut(s)	583
SmlI	CTYRAG	2 cut(s)	240, 431
SmoI	CTYRAG	2 cut(s)	240, 431
Sse9I	AATT	3 cut(s)	62, 155, 186
SspMI	CTAG	1 cut(s)	589
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	507
SwaI	ATTTAAAT	1 cut(s)	583
TaaI	ACNGT	3 cut(s)	13, 37, 94
TaqI	TCGA	3 cut(s)	205, 241, 533
TasI	AATT	3 cut(s)	62, 155, 186
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	2 cut(s)	40, 60
TseFI	GTSAC	4 cut(s)	55, 254, 292, 364
TseI	GCWGC	2 cut(s)	466, 549
Tsp45I	GTSAC	4 cut(s)	55, 254, 292, 364
TspDTI	ATGAA	1 cut(s)	392
TspRI	CASTG	2 cut(s)	40, 60
Van91I	CCANNNNNTGG	1 cut(s)	125
VneI	GTGCAC	1 cut(s)	392
XapI	RAATTY	2 cut(s)	62, 155
XhoI	CTCGAG	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.