Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 681 |
| Acc36I | ACCTGC | 1 cut(s) | 1770 |
| Acc65I | GGTACC | 2 cut(s) | 1782, 3180 |
| AccB1I | GGYRCC | 4 cut(s) | 262, 527, 1782, 3180 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 767, 2320, 3099 |
| AccI | GTMKAC | 2 cut(s) | 2695, 2703 |
| AciI | CCGC | 6 cut(s) | 697, 1592, 1623, 1644, 2059, 2304 |
| AclI | AACGTT | 1 cut(s) | 1959 |
| AclWI | GGATC | 5 cut(s) | 866, 879, 1685, 2088, 2561 |
| AcoI | YGGCCR | 1 cut(s) | 490 |
| AcuI | CTGAAG | 3 cut(s) | 720, 1152, 3006 |
| AcvI | CACGTG | 1 cut(s) | 488 |
| AdeI | CACNNNGTG | 1 cut(s) | 2320 |
| AfaI | GTAC | 8 cut(s) | 218, 303, 733, 974, 1633, 1739, 1784, 3182 |
| AfeI | AGCGCT | 1 cut(s) | 2197 |
| AflII | CTTAAG | 1 cut(s) | 3308 |
| AflIII | ACRYGT | 3 cut(s) | 2698, 2758, 2791 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3052 |
| AjnI | CCWGG | 6 cut(s) | 832, 909, 1454, 2266, 3092, 3098 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2531, 2563 |
| Alw21I | GWGCWC | 4 cut(s) | 288, 1050, 1918, 2614 |
| Alw26I | GTCTC | 2 cut(s) | 48, 1481 |
| Alw44I | GTGCAC | 1 cut(s) | 1046 |
| AlwI | GGATC | 5 cut(s) | 866, 879, 1685, 2088, 2561 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3099 |
| Ama87I | CYCGRG | 1 cut(s) | 2824 |
| Aor51HI | AGCGCT | 1 cut(s) | 2197 |
| AoxI | GGCC | 2 cut(s) | 490, 2354 |
| ApaLI | GTGCAC | 1 cut(s) | 1046 |
| ApeKI | GCWGC | 7 cut(s) | 50, 597, 939, 1451, 2193, 3161, 3216 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 459, 1521, 3301 |
| Asp718I | GGTACC | 2 cut(s) | 1782, 3180 |
| AspLEI | GCGC | 1 cut(s) | 2198 |
| AspS9I | GGNCC | 5 cut(s) | 758, 1088, 2061, 2416, 3096 |
| AsuC2I | CCSGG | 1 cut(s) | 2122 |
| AvaI | CYCGRG | 1 cut(s) | 2824 |
| AvaII | GGWCC | 5 cut(s) | 758, 1088, 2061, 2416, 3096 |
| BaeGI | GKGCMC | 5 cut(s) | 267, 532, 910, 1050, 2304 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3003, 3036 |
| BalI | TGGCCA | 1 cut(s) | 492 |
| BamHI | GGATCC | 1 cut(s) | 871 |
| BanI | GGYRCC | 4 cut(s) | 262, 527, 1782, 3180 |
| BanII | GRGCYC | 2 cut(s) | 951, 2831 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2979, 3011 |
| BbrPI | CACGTG | 1 cut(s) | 488 |
| BbsI | GAAGAC | 5 cut(s) | 2164, 2217, 2326, 2669, 2907 |
| Bbv12I | GWGCWC | 4 cut(s) | 288, 1050, 1918, 2614 |
| BbvI | GCAGC | 7 cut(s) | 62, 584, 926, 1438, 2205, 3173, 3203 |
| BceAI | ACGGC | 2 cut(s) | 2153, 2989 |
| BciT130I | CCWGG | 6 cut(s) | 834, 911, 1456, 2268, 3094, 3100 |
| BciVI | GTATCC | 2 cut(s) | 1114, 1260 |
| BclI | TGATCA | 1 cut(s) | 1812 |
| BcnI | CCSGG | 1 cut(s) | 2122 |
| BcoDI | GTCTC | 2 cut(s) | 48, 1481 |
| BfaI | CTAG | 8 cut(s) | 240, 440, 866, 876, 1335, 1374, 1760, 2111 |
| BfmI | CTRYAG | 2 cut(s) | 1230, 3015 |
| BfoI | RGCGCY | 1 cut(s) | 2199 |
| BfrI | CTTAAG | 1 cut(s) | 3308 |
| BfuAI | ACCTGC | 1 cut(s) | 1770 |
| BfuI | GTATCC | 2 cut(s) | 1114, 1260 |
| BglII | AGATCT | 2 cut(s) | 444, 739 |
| BisI | GCNGC | 8 cut(s) | 51, 598, 940, 1452, 1624, 2194, 3162, 3217 |
| BlpI | GCTNAGC | 1 cut(s) | 2636 |
| BlsI | GCNGC | 8 cut(s) | 52, 599, 941, 1453, 1625, 2195, 3163, 3218 |
| BmcAI | AGTACT | 1 cut(s) | 1633 |
| Bme1390I | CCNGG | 7 cut(s) | 834, 911, 1456, 2122, 2268, 3094, 3100 |
| Bme18I | GGWCC | 5 cut(s) | 758, 1088, 2061, 2416, 3096 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3052 |
| BmeT110I | CYCGRG | 1 cut(s) | 2824 |
| BmgT120I | GGNCC | 5 cut(s) | 758, 1088, 2061, 2416, 3096 |
| BmiI | GGNNCC | 9 cut(s) | 264, 529, 747, 759, 873, 1784, 2417, 2418, 3182 |
| BmrFI | CCNGG | 7 cut(s) | 834, 911, 1456, 2122, 2268, 3094, 3100 |
| BmrI | ACTGGG | 1 cut(s) | 3217 |
| BmuI | ACTGGG | 1 cut(s) | 3217 |
| BpiI | GAAGAC | 5 cut(s) | 2164, 2217, 2326, 2669, 2907 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 434, 466 |
| BpmI | CTGGAG | 4 cut(s) | 19, 30, 89, 728 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3248 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2636 |
| BpuMI | CCSGG | 1 cut(s) | 2122 |
| BsaAI | YACGTR | 2 cut(s) | 488, 2699 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 710, 740, 2596, 2626 |
| Bse1I | ACTGG | 6 cut(s) | 85, 517, 1923, 2607, 2671, 3212 |
| BseBI | CCWGG | 6 cut(s) | 834, 911, 1456, 2268, 3094, 3100 |
| BseMII | CTCAG | 6 cut(s) | 285, 321, 957, 1019, 2650, 3239 |
| BseNI | ACTGG | 6 cut(s) | 85, 517, 1923, 2607, 2671, 3212 |
| BseRI | GAGGAG | 4 cut(s) | 439, 2424, 2519, 3307 |
| BseSI | GKGCMC | 5 cut(s) | 267, 532, 910, 1050, 2304 |
| BseXI | GCAGC | 7 cut(s) | 62, 584, 926, 1438, 2205, 3173, 3203 |
| BseYI | CCCAGC | 4 cut(s) | 564, 2464, 2950, 3115 |
| BsgI | GTGCAG | 2 cut(s) | 1374, 2171 |
| BshFI | GGCC | 2 cut(s) | 492, 2356 |
| BshNI | GGYRCC | 4 cut(s) | 262, 527, 1782, 3180 |
| BsiHKAI | GWGCWC | 4 cut(s) | 288, 1050, 1918, 2614 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2824 |
| BsiSI | CCGG | 1 cut(s) | 2121 |
| BslFI | GGGAC | 4 cut(s) | 771, 1823, 2137, 2429 |
| BsmAI | GTCTC | 2 cut(s) | 48, 1481 |
| BsmFI | GGGAC | 4 cut(s) | 771, 1823, 2137, 2429 |
| BsmI | GAATGC | 4 cut(s) | 1351, 2030, 2375, 3126 |
| BsnI | GGCC | 2 cut(s) | 492, 2356 |
| BsoBI | CYCGRG | 1 cut(s) | 2824 |
| Bsp1407I | TGTACA | 1 cut(s) | 301 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2636 |
| Bsp19I | CCATGG | 2 cut(s) | 2847, 3257 |
| BspACI | CCGC | 6 cut(s) | 697, 1592, 1623, 1644, 2059, 2304 |
| BspANI | GGCC | 2 cut(s) | 492, 2356 |
| BspCNI | CTCAG | 6 cut(s) | 284, 322, 958, 1018, 2649, 3240 |
| BspHI | TCATGA | 1 cut(s) | 2488 |
| BspLI | GGNNCC | 9 cut(s) | 264, 529, 747, 759, 873, 1784, 2417, 2418, 3182 |
| BspMAI | CTGCAG | 1 cut(s) | 3019 |
| BspMI | ACCTGC | 1 cut(s) | 1770 |
| BspPI | GGATC | 5 cut(s) | 866, 879, 1685, 2088, 2561 |
| BspQI | GCTCTTC | 2 cut(s) | 1483, 2780 |
| BspT107I | GGYRCC | 4 cut(s) | 262, 527, 1782, 3180 |
| BspTI | CTTAAG | 1 cut(s) | 3308 |
| BsrGI | TGTACA | 1 cut(s) | 301 |
| BsrI | ACTGG | 6 cut(s) | 85, 517, 1923, 2607, 2671, 3212 |
| BssT1I | CCWWGG | 5 cut(s) | 766, 810, 1942, 2847, 3257 |
| Bst2UI | CCWGG | 6 cut(s) | 834, 911, 1456, 2268, 3094, 3100 |
| Bst4CI | ACNGT | 4 cut(s) | 94, 339, 2575, 2693 |
| Bst6I | CTCTTC | 4 cut(s) | 1483, 1600, 2780, 3307 |
| BstAFI | CTTAAG | 1 cut(s) | 3308 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 173, 1448, 2036 |
| BstAUI | TGTACA | 1 cut(s) | 301 |
| BstBAI | YACGTR | 2 cut(s) | 488, 2699 |
| BstDEI | CTNAG | 9 cut(s) | 271, 330, 966, 1005, 1280, 2285, 2636, 2999, 3248 |
| BstDSI | CCRYGG | 3 cut(s) | 1208, 2847, 3257 |
| BstEII | GGTNACC | 1 cut(s) | 1951 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2343 |
| BstH2I | RGCGCY | 1 cut(s) | 2199 |
| BstHHI | GCGC | 1 cut(s) | 2198 |
| BstMAI | GTCTC | 2 cut(s) | 48, 1481 |
| BstNI | CCWGG | 6 cut(s) | 834, 911, 1456, 2268, 3094, 3100 |
| BstNSI | RCATGY | 5 cut(s) | 993, 1451, 1732, 2648, 2795 |
| BstPI | GGTNACC | 1 cut(s) | 1951 |
| BstSCI | CCNGG | 7 cut(s) | 832, 909, 1454, 2120, 2266, 3092, 3098 |
| BstSFI | CTRYAG | 2 cut(s) | 1230, 3015 |
| BstSLI | GKGCMC | 5 cut(s) | 267, 532, 910, 1050, 2304 |
| BstV1I | GCAGC | 7 cut(s) | 62, 584, 926, 1438, 2205, 3173, 3203 |
| BstV2I | GAAGAC | 5 cut(s) | 2164, 2217, 2326, 2669, 2907 |
| BstX2I | RGATCY | 4 cut(s) | 444, 739, 871, 2093 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 524, 2050 |
| BstYI | RGATCY | 4 cut(s) | 444, 739, 871, 2093 |
| BsuI | GTATCC | 2 cut(s) | 1114, 1260 |
| BsuRI | GGCC | 2 cut(s) | 492, 2356 |
| BtgI | CCRYGG | 3 cut(s) | 1208, 2847, 3257 |
| BtsI | GCAGTG | 5 cut(s) | 60, 286, 1715, 2159, 3012 |
| BtsIMutI | CAGTG | 9 cut(s) | 60, 286, 378, 1715, 1916, 2159, 2614, 2689, 3012 |
| BveI | ACCTGC | 1 cut(s) | 1770 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3099 |
| CciI | TCATGA | 1 cut(s) | 2488 |
| CfoI | GCGC | 1 cut(s) | 2198 |
| Cfr13I | GGNCC | 5 cut(s) | 758, 1088, 2061, 2416, 3096 |
| CsiI | ACCWGGT | 1 cut(s) | 3098 |
| Csp6I | GTAC | 8 cut(s) | 217, 302, 732, 973, 1632, 1738, 1783, 3181 |
| CviQI | GTAC | 8 cut(s) | 217, 302, 732, 973, 1632, 1738, 1783, 3181 |
| DdeI | CTNAG | 9 cut(s) | 271, 330, 966, 1005, 1280, 2285, 2636, 2999, 3248 |
| DraI | TTTAAA | 3 cut(s) | 394, 1965, 3072 |
| DraIII | CACNNNGTG | 1 cut(s) | 2320 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3052 |
| EaeI | YGGCCR | 1 cut(s) | 490 |
| Eam1104I | CTCTTC | 4 cut(s) | 1483, 1600, 2780, 3307 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3052 |
| EarI | CTCTTC | 4 cut(s) | 1483, 1600, 2780, 3307 |
| EciI | GGCGGA | 1 cut(s) | 1633 |
| Eco130I | CCWWGG | 5 cut(s) | 766, 810, 1942, 2847, 3257 |
| Eco147I | AGGCCT | 1 cut(s) | 2356 |
| Eco24I | GRGCYC | 2 cut(s) | 951, 2831 |
| Eco32I | GATATC | 2 cut(s) | 1587, 3145 |
| Eco47I | GGWCC | 5 cut(s) | 758, 1088, 2061, 2416, 3096 |
| Eco47III | AGCGCT | 1 cut(s) | 2197 |
| Eco57I | CTGAAG | 3 cut(s) | 720, 1152, 3006 |
| Eco72I | CACGTG | 1 cut(s) | 488 |
| Eco88I | CYCGRG | 1 cut(s) | 2824 |
| Eco91I | GGTNACC | 1 cut(s) | 1951 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2343 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2416, 3096 |
| EcoO65I | GGTNACC | 1 cut(s) | 1951 |
| EcoRI | GAATTC | 3 cut(s) | 888, 999, 1517 |
| EcoRII | CCWGG | 6 cut(s) | 832, 909, 1454, 2266, 3092, 3098 |
| EcoRV | GATATC | 2 cut(s) | 1587, 3145 |
| EcoT14I | CCWWGG | 5 cut(s) | 766, 810, 1942, 2847, 3257 |
| EcoT38I | GRGCYC | 2 cut(s) | 951, 2831 |
| ErhI | CCWWGG | 5 cut(s) | 766, 810, 1942, 2847, 3257 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1474, 1506 |
| FaqI | GGGAC | 4 cut(s) | 771, 1823, 2137, 2429 |
| FauI | CCCGC | 1 cut(s) | 2311 |
| FbaI | TGATCA | 1 cut(s) | 1812 |
| FblI | GTMKAC | 2 cut(s) | 2695, 2703 |
| Fnu4HI | GCNGC | 8 cut(s) | 51, 598, 940, 1452, 1624, 2194, 3162, 3217 |
| FriOI | GRGCYC | 2 cut(s) | 951, 2831 |
| Fsp4HI | GCNGC | 8 cut(s) | 51, 598, 940, 1452, 1624, 2194, 3162, 3217 |
| FspBI | CTAG | 8 cut(s) | 240, 440, 866, 876, 1335, 1374, 1760, 2111 |
| GlaI | GCGC | 1 cut(s) | 2197 |
| GluI | GCNGC | 8 cut(s) | 51, 598, 940, 1452, 1624, 2194, 3162, 3217 |
| GsaI | CCCAGC | 4 cut(s) | 568, 2468, 2954, 3119 |
| GsuI | CTGGAG | 4 cut(s) | 19, 30, 89, 728 |
| HaeII | RGCGCY | 1 cut(s) | 2199 |
| HaeIII | GGCC | 2 cut(s) | 492, 2356 |
| HapII | CCGG | 1 cut(s) | 2121 |
| HhaI | GCGC | 1 cut(s) | 2198 |
| Hin6I | GCGC | 1 cut(s) | 2196 |
| HinP1I | GCGC | 1 cut(s) | 2196 |
| HincII | GTYRAC | 4 cut(s) | 1386, 1808, 2653, 2704 |
| HindII | GTYRAC | 4 cut(s) | 1386, 1808, 2653, 2704 |
| HindIII | AAGCTT | 2 cut(s) | 549, 2045 |
| HinfI | GANTC | 9 cut(s) | 41, 1659, 1836, 2428, 2516, 2654, 2750, 2810, 3053 |
| HpaII | CCGG | 1 cut(s) | 2121 |
| HpyAV | CCTTC | 9 cut(s) | 379, 600, 686, 1160, 1229, 1883, 2593, 2826, 2851 |
| HpyCH4III | ACNGT | 4 cut(s) | 94, 339, 2575, 2693 |
| HpyCH4IV | ACGT | 7 cut(s) | 487, 1959, 2164, 2235, 2298, 2698, 2758 |
| HpyF3I | CTNAG | 9 cut(s) | 271, 330, 966, 1005, 1280, 2285, 2636, 2999, 3248 |
| HpySE526I | ACGT | 7 cut(s) | 487, 1959, 2164, 2235, 2298, 2698, 2758 |
| HspAI | GCGC | 1 cut(s) | 2196 |
| KflI | GGGWCCC | 1 cut(s) | 2416 |
| KpnI | GGTACC | 2 cut(s) | 1786, 3184 |
| Ksp22I | TGATCA | 1 cut(s) | 1812 |
| LguI | GCTCTTC | 2 cut(s) | 1483, 2780 |
| LmnI | GCTCC | 4 cut(s) | 628, 1776, 2617, 3006 |
| Lsp1109I | GCAGC | 7 cut(s) | 62, 584, 926, 1438, 2205, 3173, 3203 |
| MabI | ACCWGGT | 1 cut(s) | 3098 |
| MaeI | CTAG | 8 cut(s) | 240, 440, 866, 876, 1335, 1374, 1760, 2111 |
| MaeII | ACGT | 7 cut(s) | 487, 1959, 2164, 2235, 2298, 2698, 2758 |
| MaeIII | GTNAC | 9 cut(s) | 55, 1060, 1424, 1951, 2381, 2494, 2732, 2740, 3187 |
| MfeI | CAATTG | 2 cut(s) | 17, 1883 |
| MflI | RGATCY | 4 cut(s) | 444, 739, 871, 2093 |
| MlsI | TGGCCA | 1 cut(s) | 492 |
| MluNI | TGGCCA | 1 cut(s) | 492 |
| MlyI | GAGTC | 7 cut(s) | 50, 1653, 1845, 2525, 2648, 2759, 3062 |
| MmeI | TCCRAC | 3 cut(s) | 1770, 2803, 3108 |
| Mox20I | TGGCCA | 1 cut(s) | 492 |
| MroXI | GAANNNNTTC | 3 cut(s) | 459, 1521, 3301 |
| MscI | TGGCCA | 1 cut(s) | 492 |
| MslI | CAYNNNNRTG | 3 cut(s) | 486, 825, 2364 |
| Msp20I | TGGCCA | 1 cut(s) | 492 |
| MspCI | CTTAAG | 1 cut(s) | 3308 |
| MspI | CCGG | 1 cut(s) | 2121 |
| MspR9I | CCNGG | 7 cut(s) | 834, 911, 1456, 2122, 2268, 3094, 3100 |
| MunI | CAATTG | 2 cut(s) | 17, 1883 |
| Mva1269I | GAATGC | 4 cut(s) | 1351, 2030, 2375, 3126 |
| MvaI | CCWGG | 6 cut(s) | 834, 911, 1456, 2268, 3094, 3100 |
| NciI | CCSGG | 1 cut(s) | 2122 |
| NcoI | CCATGG | 2 cut(s) | 2847, 3257 |
| NlaIV | GGNNCC | 9 cut(s) | 264, 529, 747, 759, 873, 1784, 2417, 2418, 3182 |
| NmeAIII | GCCGAG | 1 cut(s) | 2416 |
| NmuCI | GTSAC | 7 cut(s) | 55, 1424, 1951, 2381, 2494, 2732, 2740 |
| NspI | RCATGY | 5 cut(s) | 993, 1451, 1732, 2648, 2795 |
| PaeI | GCATGC | 2 cut(s) | 993, 2648 |
| PagI | TCATGA | 1 cut(s) | 2488 |
| PceI | AGGCCT | 1 cut(s) | 2356 |
| PciI | ACATGT | 1 cut(s) | 2791 |
| PciSI | GCTCTTC | 2 cut(s) | 1483, 2780 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1117, 1839, 2443 |
| PctI | GAATGC | 4 cut(s) | 1351, 2030, 2375, 3126 |
| PdmI | GAANNNNTTC | 3 cut(s) | 459, 1521, 3301 |
| PfeI | GAWTC | 2 cut(s) | 2428, 2810 |
| PflFI | GACNNNGTC | 1 cut(s) | 2738 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 767, 2320, 3099 |
| PfoI | TCCNGGA | 1 cut(s) | 2266 |
| PkrI | GCNGC | 8 cut(s) | 52, 599, 941, 1453, 1625, 2195, 3163, 3218 |
| PleI | GAGTC | 7 cut(s) | 49, 1653, 1844, 2524, 2648, 2758, 3061 |
| PmaCI | CACGTG | 1 cut(s) | 488 |
| PmlI | CACGTG | 1 cut(s) | 488 |
| PpsI | GAGTC | 7 cut(s) | 49, 1653, 1844, 2524, 2648, 2758, 3061 |
| Ppu21I | YACGTR | 2 cut(s) | 488, 2699 |
| PpuMI | RGGWCCY | 2 cut(s) | 2416, 3096 |
| PscI | ACATGT | 1 cut(s) | 2791 |
| PsiI | TTATAA | 1 cut(s) | 681 |
| Psp1406I | AACGTT | 1 cut(s) | 1959 |
| Psp5II | RGGWCCY | 2 cut(s) | 2416, 3096 |
| Psp6I | CCWGG | 6 cut(s) | 832, 909, 1454, 2266, 3092, 3098 |
| PspCI | CACGTG | 1 cut(s) | 488 |
| PspEI | GGTNACC | 1 cut(s) | 1951 |
| PspFI | CCCAGC | 4 cut(s) | 564, 2464, 2950, 3115 |
| PspGI | CCWGG | 6 cut(s) | 832, 909, 1454, 2266, 3092, 3098 |
| PspN4I | GGNNCC | 9 cut(s) | 264, 529, 747, 759, 873, 1784, 2417, 2418, 3182 |
| PspPI | GGNCC | 5 cut(s) | 758, 1088, 2061, 2416, 3096 |
| PspPPI | RGGWCCY | 2 cut(s) | 2416, 3096 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1174, 1206 |
| PstI | CTGCAG | 1 cut(s) | 3019 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3099 |
| PsuI | RGATCY | 4 cut(s) | 444, 739, 871, 2093 |
| PsyI | GACNNNGTC | 1 cut(s) | 2738 |
| RsaI | GTAC | 8 cut(s) | 218, 303, 733, 974, 1633, 1739, 1784, 3182 |
| RsaNI | GTAC | 8 cut(s) | 217, 302, 732, 973, 1632, 1738, 1783, 3181 |
| RseI | CAYNNNNRTG | 3 cut(s) | 486, 825, 2364 |
| SalI | GTCGAC | 1 cut(s) | 2702 |
| SapI | GCTCTTC | 2 cut(s) | 1483, 2780 |
| SatI | GCNGC | 8 cut(s) | 51, 598, 940, 1452, 1624, 2194, 3162, 3217 |
| Sau96I | GGNCC | 5 cut(s) | 758, 1088, 2061, 2416, 3096 |
| ScaI | AGTACT | 1 cut(s) | 1633 |
| SchI | GAGTC | 7 cut(s) | 50, 1653, 1845, 2525, 2648, 2759, 3062 |
| ScrFI | CCNGG | 7 cut(s) | 834, 911, 1456, 2122, 2268, 3094, 3100 |
| SexAI | ACCWGGT | 1 cut(s) | 3098 |
| SfcI | CTRYAG | 2 cut(s) | 1230, 3015 |
| SinI | GGWCC | 5 cut(s) | 758, 1088, 2061, 2416, 3096 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 486, 825, 2364 |
| SmlI | CTYRAG | 1 cut(s) | 3308 |
| SmoI | CTYRAG | 1 cut(s) | 3308 |
| SphI | GCATGC | 2 cut(s) | 993, 2648 |
| SseBI | AGGCCT | 1 cut(s) | 2356 |
| SsiI | CCGC | 6 cut(s) | 697, 1592, 1623, 1644, 2059, 2304 |
| SspI | AATATT | 1 cut(s) | 1559 |
| SspMI | CTAG | 8 cut(s) | 240, 440, 866, 876, 1335, 1374, 1760, 2111 |
| StuI | AGGCCT | 1 cut(s) | 2356 |
| StyD4I | CCNGG | 7 cut(s) | 832, 909, 1454, 2120, 2266, 3092, 3098 |
| StyI | CCWWGG | 5 cut(s) | 766, 810, 1942, 2847, 3257 |
| TaaI | ACNGT | 4 cut(s) | 94, 339, 2575, 2693 |
| TaiI | ACGT | 7 cut(s) | 490, 1962, 2167, 2238, 2301, 2701, 2761 |
| TaqI | TCGA | 7 cut(s) | 205, 571, 1070, 1515, 1657, 2446, 2703 |
| TatI | WGTACW | 4 cut(s) | 301, 731, 972, 1631 |
| TauI | GCSGC | 1 cut(s) | 1626 |
| TfiI | GAWTC | 2 cut(s) | 2428, 2810 |
| TscAI | CASTG | 9 cut(s) | 60, 293, 378, 1722, 1923, 2159, 2614, 2696, 3019 |
| TseFI | GTSAC | 7 cut(s) | 55, 1424, 1951, 2381, 2494, 2732, 2740 |
| TseI | GCWGC | 7 cut(s) | 50, 597, 939, 1451, 2193, 3161, 3216 |
| Tsp45I | GTSAC | 7 cut(s) | 55, 1424, 1951, 2381, 2494, 2732, 2740 |
| TspGWI | ACGGA | 2 cut(s) | 1225, 2406 |
| TspRI | CASTG | 9 cut(s) | 60, 293, 378, 1722, 1923, 2159, 2614, 2696, 3019 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2738 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 767, 2320, 3099 |
| Vha464I | CTTAAG | 1 cut(s) | 3308 |
| VneI | GTGCAC | 1 cut(s) | 1046 |
| VpaK11BI | GGWCC | 5 cut(s) | 758, 1088, 2061, 2416, 3096 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2343 |
| XbaI | TCTAGA | 1 cut(s) | 1373 |
| XceI | RCATGY | 5 cut(s) | 993, 1451, 1732, 2648, 2795 |
| XmiI | GTMKAC | 2 cut(s) | 2695, 2703 |
| XmnI | GAANNNNTTC | 3 cut(s) | 459, 1521, 3301 |
| XspI | CTAG | 8 cut(s) | 240, 440, 866, 876, 1335, 1374, 1760, 2111 |
| ZrmI | AGTACT | 1 cut(s) | 1633 |