Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_RdRP1_2 | PF26250 | 5 - 84 | 1.1e-10 | RdRP1/2, RRM domain |
| PH_RDR2 | PF24823 | 100 - 231 | 4.6e-30 | RDR2 PH-like domain |
| RdRP_helical | PF26252 | 249 - 324 | 4.7e-11 | RNA dependent RNA polymerase, helical domain |
| RdRP | PF05183 | 351 - 927 | 9.3e-199 | RNA dependent RNA polymerase |
| RdRP_head | PF26253 | 953 - 1096 | 4.5e-42 | RdRP, head domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 852 |
| AarI | CACCTGC | 1 cut(s) | 1012 |
| Acc16I | TGCGCA | 1 cut(s) | 2032 |
| Acc36I | ACCTGC | 1 cut(s) | 1012 |
| AccB1I | GGYRCC | 1 cut(s) | 518 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 128, 555, 2314 |
| AccI | GTMKAC | 2 cut(s) | 2646, 2877 |
| AccII | CGCG | 5 cut(s) | 988, 1207, 1341, 2160, 2683 |
| AccIII | TCCGGA | 2 cut(s) | 1081, 2707 |
| AclI | AACGTT | 1 cut(s) | 2120 |
| AcoI | YGGCCR | 1 cut(s) | 595 |
| AcsI | RAATTY | 7 cut(s) | 380, 990, 1589, 1647, 3014, 3292, 3335 |
| AcuI | CTGAAG | 3 cut(s) | 702, 777, 2994 |
| AcyI | GRCGYC | 1 cut(s) | 3321 |
| AdeI | CACNNNGTG | 2 cut(s) | 2161, 2314 |
| AfaI | GTAC | 8 cut(s) | 227, 965, 1174, 1630, 1733, 1778, 3161, 3286 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 128, 555, 746, 758, 2314, 2339, 2660 |
| AflIII | ACRYGT | 3 cut(s) | 817, 975, 2752 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 976 |
| AjiI | CACGTC | 4 cut(s) | 106, 818, 2293, 2753 |
| AjnI | CCWGG | 6 cut(s) | 312, 823, 900, 1458, 1475, 3086 |
| AleI | CACNNNNGTG | 3 cut(s) | 816, 2285, 3005 |
| Alw21I | GWGCWC | 8 cut(s) | 468, 986, 1041, 1380, 1775, 2182, 2608, 2622 |
| Alw26I | GTCTC | 6 cut(s) | 103, 963, 1413, 1475, 2341, 3035 |
| Alw44I | GTGCAC | 2 cut(s) | 982, 1037 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 176 |
| Ama87I | CYCGRG | 2 cut(s) | 431, 2260 |
| Aor13HI | TCCGGA | 2 cut(s) | 1081, 2707 |
| AoxI | GGCC | 3 cut(s) | 595, 1456, 2595 |
| ApaLI | GTGCAC | 2 cut(s) | 982, 1037 |
| ApeKI | GCWGC | 5 cut(s) | 298, 419, 588, 930, 3195 |
| ApoI | RAATTY | 7 cut(s) | 380, 990, 1589, 1647, 3014, 3292, 3335 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1289, 1321 |
| AseI | ATTAAT | 1 cut(s) | 3048 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1515, 2001, 2768, 3017 |
| AspLEI | GCGC | 3 cut(s) | 1209, 1385, 2033 |
| AspS9I | GGNCC | 5 cut(s) | 325, 749, 1079, 1456, 3084 |
| AsuC2I | CCSGG | 3 cut(s) | 1835, 2261, 2262 |
| AsuHPI | GGTGA | 7 cut(s) | 39, 1307, 1801, 2147, 2791, 2824, 2992 |
| AsuII | TTCGAA | 3 cut(s) | 1184, 2078, 2886 |
| AvaI | CYCGRG | 2 cut(s) | 431, 2260 |
| AvaII | GGWCC | 4 cut(s) | 325, 749, 1079, 3084 |
| BaeGI | GKGCMC | 3 cut(s) | 901, 986, 1041 |
| BalI | TGGCCA | 1 cut(s) | 597 |
| BanI | GGYRCC | 1 cut(s) | 518 |
| BanII | GRGCYC | 3 cut(s) | 468, 1380, 2622 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2967, 2999 |
| BbsI | GAAGAC | 1 cut(s) | 430 |
| Bbv12I | GWGCWC | 8 cut(s) | 468, 986, 1041, 1380, 1775, 2182, 2608, 2622 |
| BbvCI | CCTCAGC | 1 cut(s) | 3227 |
| BbvI | GCAGC | 5 cut(s) | 285, 406, 575, 917, 3182 |
| BceAI | ACGGC | 3 cut(s) | 757, 2270, 2977 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3106, 3140 |
| BciT130I | CCWGG | 6 cut(s) | 314, 825, 902, 1460, 1477, 3088 |
| BciVI | GTATCC | 1 cut(s) | 3145 |
| BclI | TGATCA | 2 cut(s) | 481, 1806 |
| BcnI | CCSGG | 3 cut(s) | 1835, 2261, 2262 |
| BcoDI | GTCTC | 6 cut(s) | 103, 963, 1413, 1475, 2341, 3035 |
| BfaI | CTAG | 6 cut(s) | 249, 857, 867, 1449, 2241, 3081 |
| BfmI | CTRYAG | 1 cut(s) | 1224 |
| BfuAI | ACCTGC | 1 cut(s) | 1012 |
| BfuI | GTATCC | 1 cut(s) | 3145 |
| BglII | AGATCT | 2 cut(s) | 730, 2416 |
| BisI | GCNGC | 8 cut(s) | 299, 420, 589, 931, 2298, 2681, 3196, 3319 |
| BlpI | GCTNAGC | 1 cut(s) | 1379 |
| BlsI | GCNGC | 8 cut(s) | 300, 421, 590, 932, 2299, 2682, 3197, 3320 |
| Bme1390I | CCNGG | 9 cut(s) | 314, 825, 902, 1460, 1477, 1835, 2261, 2262, 3088 |
| Bme18I | GGWCC | 4 cut(s) | 325, 749, 1079, 3084 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 976 |
| BmeT110I | CYCGRG | 2 cut(s) | 431, 2260 |
| BmgBI | CACGTC | 4 cut(s) | 106, 818, 2293, 2753 |
| BmgT120I | GGNCC | 5 cut(s) | 325, 749, 1079, 1456, 3084 |
| BmiI | GGNNCC | 1 cut(s) | 520 |
| BmrFI | CCNGG | 9 cut(s) | 314, 825, 902, 1460, 1477, 1835, 2261, 2262, 3088 |
| BmrI | ACTGGG | 3 cut(s) | 565, 3000, 3196 |
| BmsI | GCATC | 6 cut(s) | 299, 1981, 2042, 2362, 2893, 2973 |
| BmuI | ACTGGG | 3 cut(s) | 565, 3000, 3196 |
| BpiI | GAAGAC | 1 cut(s) | 430 |
| BpmI | CTGGAG | 3 cut(s) | 92, 105, 1901 |
| Bpu10I | CCTNAGC | 3 cut(s) | 488, 2368, 3227 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1379 |
| Bpu14I | TTCGAA | 3 cut(s) | 1184, 2078, 2886 |
| BpuEI | CTTGAG | 1 cut(s) | 1107 |
| BpuMI | CCSGG | 3 cut(s) | 1835, 2261, 2262 |
| Bsa29I | ATCGAT | 2 cut(s) | 208, 2898 |
| BsaAI | YACGTR | 3 cut(s) | 653, 1776, 2739 |
| BsaBI | GATNNNNATC | 2 cut(s) | 210, 3263 |
| BsaHI | GRCGYC | 1 cut(s) | 3321 |
| BsaI | GGTCTC | 2 cut(s) | 2341, 3035 |
| BsaWI | WCCGGW | 4 cut(s) | 49, 352, 1081, 2707 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 701, 731, 1612, 1642, 1709, 1739 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 128, 555, 746, 758, 2314, 2339, 2660 |
| Bse3DI | GCAATG | 2 cut(s) | 2153, 2300 |
| Bse8I | GATNNNNATC | 2 cut(s) | 210, 3263 |
| BseAI | TCCGGA | 2 cut(s) | 1081, 2707 |
| BseBI | CCWGG | 6 cut(s) | 314, 825, 902, 1460, 1477, 3088 |
| BseCI | ATCGAT | 2 cut(s) | 208, 2898 |
| BseJI | GATNNNNATC | 2 cut(s) | 210, 3263 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 128, 555, 746, 758, 2314, 2339, 2660 |
| BseMI | GCAATG | 2 cut(s) | 2153, 2300 |
| BseMII | CTCAG | 5 cut(s) | 1393, 1703, 2382, 2427, 3241 |
| BseRI | GAGGAG | 1 cut(s) | 2388 |
| BseSI | GKGCMC | 3 cut(s) | 901, 986, 1041 |
| BseXI | GCAGC | 5 cut(s) | 285, 406, 575, 917, 3182 |
| BseYI | CCCAGC | 3 cut(s) | 2542, 2846, 2938 |
| BsgI | GTGCAG | 2 cut(s) | 284, 2445 |
| Bsh1236I | CGCG | 5 cut(s) | 988, 1207, 1341, 2160, 2683 |
| BshFI | GGCC | 3 cut(s) | 597, 1458, 2597 |
| BshNI | GGYRCC | 1 cut(s) | 518 |
| BshVI | ATCGAT | 2 cut(s) | 208, 2898 |
| BsiHKAI | GWGCWC | 8 cut(s) | 468, 986, 1041, 1380, 1775, 2182, 2608, 2622 |
| BsiHKCI | CYCGRG | 2 cut(s) | 431, 2260 |
| BsiSI | CCGG | 7 cut(s) | 50, 353, 1082, 1835, 1988, 2261, 2708 |
| BslFI | GGGAC | 7 cut(s) | 102, 245, 300, 388, 1424, 1817, 2423 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 128, 555, 746, 758, 2314, 2339, 2660 |
| BsmAI | GTCTC | 6 cut(s) | 103, 963, 1413, 1475, 2341, 3035 |
| BsmFI | GGGAC | 7 cut(s) | 102, 245, 300, 388, 1424, 1817, 2423 |
| BsmI | GAATGC | 4 cut(s) | 1345, 2024, 2369, 2803 |
| BsnI | GGCC | 3 cut(s) | 597, 1458, 2597 |
| Bso31I | GGTCTC | 2 cut(s) | 2341, 3035 |
| BsoBI | CYCGRG | 2 cut(s) | 431, 2260 |
| Bsp119I | TTCGAA | 3 cut(s) | 1184, 2078, 2886 |
| Bsp1286I | GDGCHC | 9 cut(s) | 468, 901, 986, 1041, 1380, 1775, 2182, 2608, 2622 |
| Bsp13I | TCCGGA | 2 cut(s) | 1081, 2707 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1379 |
| BspANI | GGCC | 3 cut(s) | 597, 1458, 2597 |
| BspCNI | CTCAG | 5 cut(s) | 1392, 1704, 2381, 2426, 3240 |
| BspDI | ATCGAT | 2 cut(s) | 208, 2898 |
| BspEI | TCCGGA | 2 cut(s) | 1081, 2707 |
| BspFNI | CGCG | 5 cut(s) | 988, 1207, 1341, 2160, 2683 |
| BspLI | GGNNCC | 1 cut(s) | 520 |
| BspMAI | CTGCAG | 1 cut(s) | 1228 |
| BspMI | ACCTGC | 1 cut(s) | 1012 |
| BspQI | GCTCTTC | 1 cut(s) | 1477 |
| BspT104I | TTCGAA | 3 cut(s) | 1184, 2078, 2886 |
| BspT107I | GGYRCC | 1 cut(s) | 518 |
| BspTNI | GGTCTC | 2 cut(s) | 2341, 3035 |
| BsrDI | GCAATG | 2 cut(s) | 2153, 2300 |
| BssNI | GRCGYC | 1 cut(s) | 3321 |
| BssT1I | CCWWGG | 2 cut(s) | 801, 1825 |
| Bst2UI | CCWGG | 6 cut(s) | 314, 825, 902, 1460, 1477, 3088 |
| Bst4CI | ACNGT | 5 cut(s) | 97, 1103, 2633, 2836, 3105 |
| Bst6I | CTCTTC | 3 cut(s) | 1224, 1477, 2199 |
| BstACI | GRCGYC | 1 cut(s) | 3321 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 176 |
| BstBAI | YACGTR | 3 cut(s) | 653, 1776, 2739 |
| BstBI | TTCGAA | 3 cut(s) | 1184, 2078, 2886 |
| BstC8I | GCNNGC | 7 cut(s) | 831, 928, 986, 1343, 2622, 2694, 3347 |
| BstDEI | CTNAG | 8 cut(s) | 488, 953, 1015, 1379, 1712, 2368, 2413, 3227 |
| BstDSI | CCRYGG | 3 cut(s) | 2286, 2835, 3236 |
| BstFNI | CGCG | 5 cut(s) | 988, 1207, 1341, 2160, 2683 |
| BstHHI | GCGC | 3 cut(s) | 1209, 1385, 2033 |
| BstMAI | GTCTC | 6 cut(s) | 103, 963, 1413, 1475, 2341, 3035 |
| BstNI | CCWGG | 6 cut(s) | 314, 825, 902, 1460, 1477, 3088 |
| BstNSI | RCATGY | 6 cut(s) | 170, 979, 1726, 2542, 2567, 3349 |
| BstSCI | CCNGG | 9 cut(s) | 312, 823, 900, 1458, 1475, 1833, 2259, 2260, 3086 |
| BstSFI | CTRYAG | 1 cut(s) | 1224 |
| BstSLI | GKGCMC | 3 cut(s) | 901, 986, 1041 |
| BstSNI | TACGTA | 1 cut(s) | 2739 |
| BstUI | CGCG | 5 cut(s) | 988, 1207, 1341, 2160, 2683 |
| BstV1I | GCAGC | 5 cut(s) | 285, 406, 575, 917, 3182 |
| BstV2I | GAAGAC | 1 cut(s) | 430 |
| BstX2I | RGATCY | 3 cut(s) | 730, 1684, 2416 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 515, 2044 |
| BstYI | RGATCY | 3 cut(s) | 730, 1684, 2416 |
| Bsu15I | ATCGAT | 2 cut(s) | 208, 2898 |
| BsuI | GTATCC | 1 cut(s) | 3145 |
| BsuRI | GGCC | 3 cut(s) | 597, 1458, 2597 |
| BsuTUI | ATCGAT | 2 cut(s) | 208, 2898 |
| BtgI | CCRYGG | 3 cut(s) | 2286, 2835, 3236 |
| BtrI | CACGTC | 4 cut(s) | 106, 818, 2293, 2753 |
| BtsI | GCAGTG | 2 cut(s) | 63, 2182 |
| BtsIMutI | CAGTG | 8 cut(s) | 63, 81, 1356, 1709, 2169, 2182, 2629, 3010 |
| BveI | ACCTGC | 1 cut(s) | 1012 |
| Cac8I | GCNNGC | 7 cut(s) | 831, 928, 986, 1343, 2622, 2694, 3347 |
| CaiI | CAGNNNCTG | 1 cut(s) | 176 |
| CfoI | GCGC | 3 cut(s) | 1209, 1385, 2033 |
| Cfr13I | GGNCC | 5 cut(s) | 325, 749, 1079, 1456, 3084 |
| Cfr9I | CCCGGG | 1 cut(s) | 2260 |
| ClaI | ATCGAT | 2 cut(s) | 208, 2898 |
| CseI | GACGC | 5 cut(s) | 696, 1353, 2023, 3138, 3310 |
| CsiI | ACCWGGT | 1 cut(s) | 3086 |
| Csp6I | GTAC | 8 cut(s) | 226, 964, 1173, 1629, 1732, 1777, 3160, 3285 |
| CviQI | GTAC | 8 cut(s) | 226, 964, 1173, 1629, 1732, 1777, 3160, 3285 |
| DdeI | CTNAG | 8 cut(s) | 488, 953, 1015, 1379, 1712, 2368, 2413, 3227 |
| DraIII | CACNNNGTG | 2 cut(s) | 2161, 2314 |
| DriI | GACNNNNNGTC | 1 cut(s) | 976 |
| EaeI | YGGCCR | 1 cut(s) | 595 |
| Eam1104I | CTCTTC | 3 cut(s) | 1224, 1477, 2199 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 976 |
| EarI | CTCTTC | 3 cut(s) | 1224, 1477, 2199 |
| EciI | GGCGGA | 1 cut(s) | 136 |
| Ecl136II | GAGCTC | 3 cut(s) | 466, 1378, 2620 |
| Eco105I | TACGTA | 1 cut(s) | 2739 |
| Eco130I | CCWWGG | 2 cut(s) | 801, 1825 |
| Eco24I | GRGCYC | 3 cut(s) | 468, 1380, 2622 |
| Eco31I | GGTCTC | 2 cut(s) | 2341, 3035 |
| Eco32I | GATATC | 2 cut(s) | 212, 1581 |
| Eco47I | GGWCC | 4 cut(s) | 325, 749, 1079, 3084 |
| Eco53kI | GAGCTC | 3 cut(s) | 466, 1378, 2620 |
| Eco57I | CTGAAG | 3 cut(s) | 702, 777, 2994 |
| Eco88I | CYCGRG | 2 cut(s) | 431, 2260 |
| EcoICRI | GAGCTC | 3 cut(s) | 466, 1378, 2620 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3084 |
| EcoRI | GAATTC | 2 cut(s) | 990, 3292 |
| EcoRII | CCWGG | 6 cut(s) | 312, 823, 900, 1458, 1475, 3086 |
| EcoRV | GATATC | 2 cut(s) | 212, 1581 |
| EcoT14I | CCWWGG | 2 cut(s) | 801, 1825 |
| EcoT38I | GRGCYC | 3 cut(s) | 468, 1380, 2622 |
| ErhI | CCWWGG | 2 cut(s) | 801, 1825 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 287, 319, 1204, 1236, 1852, 1884 |
| FaqI | GGGAC | 7 cut(s) | 102, 245, 300, 388, 1424, 1817, 2423 |
| FauI | CCCGC | 2 cut(s) | 1610, 2340 |
| FauNDI | CATATG | 2 cut(s) | 628, 3303 |
| FbaI | TGATCA | 2 cut(s) | 481, 1806 |
| FblI | GTMKAC | 2 cut(s) | 2646, 2877 |
| Fnu4HI | GCNGC | 8 cut(s) | 299, 420, 589, 931, 2298, 2681, 3196, 3319 |
| FriOI | GRGCYC | 3 cut(s) | 468, 1380, 2622 |
| Fsp4HI | GCNGC | 8 cut(s) | 299, 420, 589, 931, 2298, 2681, 3196, 3319 |
| FspBI | CTAG | 6 cut(s) | 249, 857, 867, 1449, 2241, 3081 |
| FspI | TGCGCA | 1 cut(s) | 2032 |
| GlaI | GCGC | 3 cut(s) | 1208, 1384, 2032 |
| GluI | GCNGC | 8 cut(s) | 299, 420, 589, 931, 2298, 2681, 3196, 3319 |
| GsaI | CCCAGC | 3 cut(s) | 2546, 2850, 2942 |
| GsuI | CTGGAG | 3 cut(s) | 92, 105, 1901 |
| HaeIII | GGCC | 3 cut(s) | 597, 1458, 2597 |
| HapII | CCGG | 7 cut(s) | 50, 353, 1082, 1835, 1988, 2261, 2708 |
| HgaI | GACGC | 5 cut(s) | 696, 1353, 2023, 3138, 3310 |
| HhaI | GCGC | 3 cut(s) | 1209, 1385, 2033 |
| Hin1I | GRCGYC | 1 cut(s) | 3321 |
| Hin6I | GCGC | 3 cut(s) | 1207, 1383, 2031 |
| HinP1I | GCGC | 3 cut(s) | 1207, 1383, 2031 |
| HincII | GTYRAC | 3 cut(s) | 571, 1802, 2647 |
| HindII | GTYRAC | 3 cut(s) | 571, 1802, 2647 |
| HindIII | AAGCTT | 2 cut(s) | 2765, 2889 |
| HpaII | CCGG | 7 cut(s) | 50, 353, 1082, 1835, 1988, 2261, 2708 |
| HphI | GGTGA | 7 cut(s) | 39, 1307, 1801, 2147, 2791, 2824, 2992 |
| Hpy99I | CGWCG | 2 cut(s) | 219, 2489 |
| HpyCH4III | ACNGT | 5 cut(s) | 97, 1103, 2633, 2836, 3105 |
| HpyF3I | CTNAG | 8 cut(s) | 488, 953, 1015, 1379, 1712, 2368, 2413, 3227 |
| Hsp92I | GRCGYC | 1 cut(s) | 3321 |
| HspAI | GCGC | 3 cut(s) | 1207, 1383, 2031 |
| Kpn2I | TCCGGA | 2 cut(s) | 1081, 2707 |
| Ksp22I | TGATCA | 2 cut(s) | 481, 1806 |
| LguI | GCTCTTC | 1 cut(s) | 1477 |
| LmnI | GCTCC | 3 cut(s) | 463, 471, 1770 |
| Lsp1109I | GCAGC | 5 cut(s) | 285, 406, 575, 917, 3182 |
| LweI | GCATC | 6 cut(s) | 299, 1981, 2042, 2362, 2893, 2973 |
| MabI | ACCWGGT | 1 cut(s) | 3086 |
| MaeI | CTAG | 6 cut(s) | 249, 857, 867, 1449, 2241, 3081 |
| MflI | RGATCY | 3 cut(s) | 730, 1684, 2416 |
| MhlI | GDGCHC | 9 cut(s) | 468, 901, 986, 1041, 1380, 1775, 2182, 2608, 2622 |
| MlsI | TGGCCA | 1 cut(s) | 597 |
| MluNI | TGGCCA | 1 cut(s) | 597 |
| MlyI | GAGTC | 6 cut(s) | 227, 1839, 2405, 2519, 2642, 2753 |
| MmeI | TCCRAC | 5 cut(s) | 1122, 1712, 1764, 2103, 2797 |
| Mox20I | TGGCCA | 1 cut(s) | 597 |
| MroI | TCCGGA | 2 cut(s) | 1081, 2707 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1515, 2001, 2768, 3017 |
| MscI | TGGCCA | 1 cut(s) | 597 |
| MslI | CAYNNNNRTG | 4 cut(s) | 816, 2285, 2358, 3005 |
| Msp20I | TGGCCA | 1 cut(s) | 597 |
| MspI | CCGG | 7 cut(s) | 50, 353, 1082, 1835, 1988, 2261, 2708 |
| MspR9I | CCNGG | 9 cut(s) | 314, 825, 902, 1460, 1477, 1835, 2261, 2262, 3088 |
| Mva1269I | GAATGC | 4 cut(s) | 1345, 2024, 2369, 2803 |
| MvaI | CCWGG | 6 cut(s) | 314, 825, 902, 1460, 1477, 3088 |
| MvnI | CGCG | 5 cut(s) | 988, 1207, 1341, 2160, 2683 |
| NciI | CCSGG | 3 cut(s) | 1835, 2261, 2262 |
| NdeI | CATATG | 2 cut(s) | 628, 3303 |
| NlaIV | GGNNCC | 1 cut(s) | 520 |
| NmuCI | GTSAC | 6 cut(s) | 841, 1051, 1295, 1945, 3063, 3166 |
| NsbI | TGCGCA | 1 cut(s) | 2032 |
| NspI | RCATGY | 6 cut(s) | 170, 979, 1726, 2542, 2567, 3349 |
| NspV | TTCGAA | 3 cut(s) | 1184, 2078, 2886 |
| OliI | CACNNNNGTG | 3 cut(s) | 816, 2285, 3005 |
| PaeI | GCATGC | 1 cut(s) | 3349 |
| PaeR7I | CTCGAG | 1 cut(s) | 431 |
| PaqCI | CACCTGC | 1 cut(s) | 1012 |
| PciI | ACATGT | 1 cut(s) | 975 |
| PciSI | GCTCTTC | 1 cut(s) | 1477 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1181, 2437 |
| PctI | GAATGC | 4 cut(s) | 1345, 2024, 2369, 2803 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1515, 2001, 2768, 3017 |
| PfeI | GAWTC | 7 cut(s) | 44, 173, 413, 1545, 1873, 2883, 3110 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 128, 555, 2314 |
| PfoI | TCCNGGA | 1 cut(s) | 1833 |
| PkrI | GCNGC | 8 cut(s) | 300, 421, 590, 932, 2299, 2682, 3197, 3320 |
| PleI | GAGTC | 6 cut(s) | 227, 1838, 2405, 2518, 2642, 2752 |
| PpsI | GAGTC | 6 cut(s) | 227, 1838, 2405, 2518, 2642, 2752 |
| Ppu21I | YACGTR | 3 cut(s) | 653, 1776, 2739 |
| PpuMI | RGGWCCY | 1 cut(s) | 3084 |
| PscI | ACATGT | 1 cut(s) | 975 |
| PshBI | ATTAAT | 1 cut(s) | 3048 |
| PsiI | TTATAA | 1 cut(s) | 852 |
| Psp124BI | GAGCTC | 3 cut(s) | 468, 1380, 2622 |
| Psp1406I | AACGTT | 1 cut(s) | 2120 |
| Psp5II | RGGWCCY | 1 cut(s) | 3084 |
| Psp6I | CCWGG | 6 cut(s) | 312, 823, 900, 1458, 1475, 3086 |
| PspFI | CCCAGC | 3 cut(s) | 2542, 2846, 2938 |
| PspGI | CCWGG | 6 cut(s) | 312, 823, 900, 1458, 1475, 3086 |
| PspN4I | GGNNCC | 1 cut(s) | 520 |
| PspPI | GGNCC | 5 cut(s) | 325, 749, 1079, 1456, 3084 |
| PspPPI | RGGWCCY | 1 cut(s) | 3084 |
| PspXI | VCTCGAGB | 1 cut(s) | 431 |
| PstI | CTGCAG | 1 cut(s) | 1228 |
| PstNI | CAGNNNCTG | 1 cut(s) | 176 |
| PsuI | RGATCY | 3 cut(s) | 730, 1684, 2416 |
| RsaI | GTAC | 8 cut(s) | 227, 965, 1174, 1630, 1733, 1778, 3161, 3286 |
| RsaNI | GTAC | 8 cut(s) | 226, 964, 1173, 1629, 1732, 1777, 3160, 3285 |
| RseI | CAYNNNNRTG | 4 cut(s) | 816, 2285, 2358, 3005 |
| SacI | GAGCTC | 3 cut(s) | 468, 1380, 2622 |
| SalI | GTCGAC | 1 cut(s) | 2645 |
| SapI | GCTCTTC | 1 cut(s) | 1477 |
| SatI | GCNGC | 8 cut(s) | 299, 420, 589, 931, 2298, 2681, 3196, 3319 |
| Sau96I | GGNCC | 5 cut(s) | 325, 749, 1079, 1456, 3084 |
| SchI | GAGTC | 6 cut(s) | 227, 1839, 2405, 2519, 2642, 2753 |
| ScrFI | CCNGG | 9 cut(s) | 314, 825, 902, 1460, 1477, 1835, 2261, 2262, 3088 |
| SduI | GDGCHC | 9 cut(s) | 468, 901, 986, 1041, 1380, 1775, 2182, 2608, 2622 |
| SexAI | ACCWGGT | 1 cut(s) | 3086 |
| SfaNI | GCATC | 6 cut(s) | 299, 1981, 2042, 2362, 2893, 2973 |
| SfcI | CTRYAG | 1 cut(s) | 1224 |
| Sfr274I | CTCGAG | 1 cut(s) | 431 |
| SfuI | TTCGAA | 3 cut(s) | 1184, 2078, 2886 |
| SinI | GGWCC | 4 cut(s) | 325, 749, 1079, 3084 |
| SlaI | CTCGAG | 1 cut(s) | 431 |
| SmaI | CCCGGG | 1 cut(s) | 2262 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 816, 2285, 2358, 3005 |
| SmlI | CTYRAG | 2 cut(s) | 431, 1122 |
| SmoI | CTYRAG | 2 cut(s) | 431, 1122 |
| SnaBI | TACGTA | 1 cut(s) | 2739 |
| SphI | GCATGC | 1 cut(s) | 3349 |
| SspI | AATATT | 1 cut(s) | 1553 |
| SspMI | CTAG | 6 cut(s) | 249, 857, 867, 1449, 2241, 3081 |
| SstI | GAGCTC | 3 cut(s) | 468, 1380, 2622 |
| StyD4I | CCNGG | 9 cut(s) | 312, 823, 900, 1458, 1475, 1833, 2259, 2260, 3086 |
| StyI | CCWWGG | 2 cut(s) | 801, 1825 |
| TaaI | ACNGT | 5 cut(s) | 97, 1103, 2633, 2836, 3105 |
| TatI | WGTACW | 2 cut(s) | 963, 1628 |
| TauI | GCSGC | 3 cut(s) | 2300, 2683, 3321 |
| TfiI | GAWTC | 7 cut(s) | 44, 173, 413, 1545, 1873, 2883, 3110 |
| TscAI | CASTG | 8 cut(s) | 63, 88, 1356, 1716, 2176, 2182, 2636, 3010 |
| TseFI | GTSAC | 6 cut(s) | 841, 1051, 1295, 1945, 3063, 3166 |
| TseI | GCWGC | 5 cut(s) | 298, 419, 588, 930, 3195 |
| Tsp45I | GTSAC | 6 cut(s) | 841, 1051, 1295, 1945, 3063, 3166 |
| TspDTI | ATGAA | 9 cut(s) | 656, 1269, 1314, 1518, 2124, 2376, 2462, 2704, 3290 |
| TspGWI | ACGGA | 4 cut(s) | 458, 828, 2895, 3225 |
| TspMI | CCCGGG | 1 cut(s) | 2260 |
| TspRI | CASTG | 8 cut(s) | 63, 88, 1356, 1716, 2176, 2182, 2636, 3010 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 128, 555, 2314 |
| VneI | GTGCAC | 2 cut(s) | 982, 1037 |
| VpaK11BI | GGWCC | 4 cut(s) | 325, 749, 1079, 3084 |
| VspI | ATTAAT | 1 cut(s) | 3048 |
| XapI | RAATTY | 7 cut(s) | 380, 990, 1589, 1647, 3014, 3292, 3335 |
| XceI | RCATGY | 6 cut(s) | 170, 979, 1726, 2542, 2567, 3349 |
| XhoI | CTCGAG | 1 cut(s) | 431 |
| XmaI | CCCGGG | 1 cut(s) | 2260 |
| XmiI | GTMKAC | 2 cut(s) | 2646, 2877 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1515, 2001, 2768, 3017 |
| XspI | CTAG | 6 cut(s) | 249, 857, 867, 1449, 2241, 3081 |