Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PH_RDR2 | PF24823 | 64 - 199 | 7.8e-31 | RDR2 PH-like domain |
| RdRP_helical | PF26252 | 217 - 297 | 2.6e-12 | RNA dependent RNA polymerase, helical domain |
| RdRP | PF05183 | 316 - 739 | 4.6e-138 | RNA dependent RNA polymerase |
| RdRP | PF05183 | 740 - 820 | 8.3e-23 | RNA dependent RNA polymerase |
| RdRP_head | PF26253 | 844 - 991 | 1.9e-42 | RdRP, head domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 426, 756, 1860 |
| Acc65I | GGTACC | 1 cut(s) | 2847 |
| AccB1I | GGYRCC | 3 cut(s) | 154, 410, 2847 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2185, 2310 |
| AccI | GTMKAC | 1 cut(s) | 963 |
| AccIII | TCCGGA | 1 cut(s) | 1399 |
| AclWI | GGATC | 9 cut(s) | 322, 761, 774, 1559, 1725, 1772, 2485, 2528, 2783 |
| AcsI | RAATTY | 4 cut(s) | 40, 700, 1225, 1469 |
| AcuI | CTGAAG | 4 cut(s) | 623, 1038, 1871, 2667 |
| AcvI | CACGTG | 1 cut(s) | 371 |
| AdeI | CACNNNGTG | 1 cut(s) | 2185 |
| AfaI | GTAC | 5 cut(s) | 869, 1105, 1658, 2346, 2849 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 662, 2185, 2210, 2310, 2339, 2508 |
| AflIII | ACRYGT | 2 cut(s) | 864, 1940 |
| AgeI | ACCGGT | 1 cut(s) | 2339 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 2372, 2713 |
| AhlI | ACTAGT | 1 cut(s) | 2347 |
| AjnI | CCWGG | 5 cut(s) | 804, 1328, 1355, 1641, 2131 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1421, 1453 |
| Alw21I | GWGCWC | 3 cut(s) | 19, 288, 544 |
| Alw26I | GTCTC | 3 cut(s) | 1272, 1355, 2898 |
| Alw44I | GTGCAC | 2 cut(s) | 284, 540 |
| AlwI | GGATC | 9 cut(s) | 322, 761, 774, 1559, 1725, 1772, 2485, 2528, 2783 |
| Ama87I | CYCGRG | 1 cut(s) | 728 |
| Aor13HI | TCCGGA | 1 cut(s) | 1399 |
| AoxI | GGCC | 2 cut(s) | 919, 1255 |
| ApaLI | GTGCAC | 2 cut(s) | 284, 540 |
| ApeKI | GCWGC | 5 cut(s) | 131, 142, 358, 1325, 2828 |
| ApoI | RAATTY | 4 cut(s) | 40, 700, 1225, 1469 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1571, 1603 |
| AseI | ATTAAT | 1 cut(s) | 2571 |
| AsiGI | ACCGGT | 1 cut(s) | 2339 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1395, 1767, 2447 |
| Asp718I | GGTACC | 1 cut(s) | 2847 |
| AspS9I | GGNCC | 4 cut(s) | 79, 974, 1255, 2313 |
| AsuC2I | CCSGG | 3 cut(s) | 729, 730, 1993 |
| AsuHPI | GGTGA | 6 cut(s) | 115, 888, 1187, 1301, 2024, 2665 |
| AsuII | TTCGAA | 2 cut(s) | 1614, 2937 |
| AvaI | CYCGRG | 1 cut(s) | 728 |
| AvaII | GGWCC | 3 cut(s) | 79, 974, 2313 |
| BaeGI | GKGCMC | 3 cut(s) | 288, 415, 544 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2664, 2697 |
| BamHI | GGATCC | 1 cut(s) | 766 |
| BanI | GGYRCC | 3 cut(s) | 154, 410, 2847 |
| BanII | GRGCYC | 1 cut(s) | 19 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1243, 1275, 2640, 2672 |
| BbrPI | CACGTG | 1 cut(s) | 371 |
| Bbv12I | GWGCWC | 3 cut(s) | 19, 288, 544 |
| BbvCI | CCTCAGC | 1 cut(s) | 1110 |
| BbvI | GCAGC | 5 cut(s) | 143, 154, 345, 1337, 2840 |
| BceAI | ACGGC | 2 cut(s) | 55, 1861 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1188, 1198, 1222, 1232 |
| BciT130I | CCWGG | 5 cut(s) | 806, 1330, 1357, 1643, 2133 |
| BciVI | GTATCC | 1 cut(s) | 1134 |
| BcnI | CCSGG | 3 cut(s) | 729, 730, 1993 |
| BcoDI | GTCTC | 3 cut(s) | 1272, 1355, 2898 |
| BcuI | ACTAGT | 1 cut(s) | 2347 |
| BfaI | CTAG | 6 cut(s) | 761, 774, 1196, 1982, 2348, 2508 |
| BfmI | CTRYAG | 1 cut(s) | 1080 |
| BfuI | GTATCC | 1 cut(s) | 1134 |
| BglII | AGATCT | 1 cut(s) | 1964 |
| BisI | GCNGC | 7 cut(s) | 48, 132, 143, 359, 1326, 2360, 2829 |
| BlsI | GCNGC | 7 cut(s) | 49, 133, 144, 360, 1327, 2361, 2830 |
| BmcAI | AGTACT | 1 cut(s) | 1105 |
| Bme1390I | CCNGG | 8 cut(s) | 729, 730, 806, 1330, 1357, 1643, 1993, 2133 |
| Bme18I | GGWCC | 3 cut(s) | 79, 974, 2313 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 2372, 2713 |
| BmeT110I | CYCGRG | 1 cut(s) | 728 |
| BmgT120I | GGNCC | 4 cut(s) | 79, 974, 1255, 2313 |
| BmiI | GGNNCC | 9 cut(s) | 156, 412, 447, 654, 768, 1256, 1426, 2315, 2849 |
| BmrFI | CCNGG | 8 cut(s) | 729, 730, 806, 1330, 1357, 1643, 1993, 2133 |
| BmrI | ACTGGG | 1 cut(s) | 2884 |
| BmsI | GCATC | 9 cut(s) | 57, 191, 504, 1062, 1881, 1919, 2235, 2566, 2846 |
| BmuI | ACTGGG | 1 cut(s) | 2884 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 317, 349 |
| BpmI | CTGGAG | 1 cut(s) | 2154 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1110 |
| Bpu14I | TTCGAA | 2 cut(s) | 1614, 2937 |
| BpuEI | CTTGAG | 1 cut(s) | 344 |
| BpuMI | CCSGG | 3 cut(s) | 729, 730, 1993 |
| BsaAI | YACGTR | 3 cut(s) | 371, 407, 1943 |
| BsaI | GGTCTC | 1 cut(s) | 2898 |
| BsaWI | WCCGGW | 2 cut(s) | 1399, 2339 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 87, 117, 430, 460, 1111, 1141 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 662, 2185, 2210, 2310, 2339, 2508 |
| Bse118I | RCCGGY | 2 cut(s) | 2167, 2339 |
| Bse1I | ACTGG | 7 cut(s) | 400, 548, 1125, 1286, 2053, 2668, 2879 |
| Bse3DI | GCAATG | 2 cut(s) | 1755, 2030 |
| BseAI | TCCGGA | 1 cut(s) | 1399 |
| BseBI | CCWGG | 5 cut(s) | 806, 1330, 1357, 1643, 2133 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 662, 2185, 2210, 2310, 2339, 2508 |
| BseMI | GCAATG | 2 cut(s) | 1755, 2030 |
| BseMII | CTCAG | 5 cut(s) | 204, 905, 1101, 1392, 2906 |
| BseNI | ACTGG | 7 cut(s) | 400, 548, 1125, 1286, 2053, 2668, 2879 |
| BseRI | GAGGAG | 4 cut(s) | 9, 108, 230, 1745 |
| BseSI | GKGCMC | 3 cut(s) | 288, 415, 544 |
| BseXI | GCAGC | 5 cut(s) | 143, 154, 345, 1337, 2840 |
| BseYI | CCCAGC | 2 cut(s) | 459, 2611 |
| BsgI | GTGCAG | 1 cut(s) | 1248 |
| BshFI | GGCC | 2 cut(s) | 921, 1257 |
| BshNI | GGYRCC | 3 cut(s) | 154, 410, 2847 |
| BshTI | ACCGGT | 1 cut(s) | 2339 |
| BsiHKAI | GWGCWC | 3 cut(s) | 19, 288, 544 |
| BsiHKCI | CYCGRG | 1 cut(s) | 728 |
| BsiSI | CCGG | 7 cut(s) | 349, 624, 729, 1400, 1992, 2168, 2340 |
| BslFI | GGGAC | 2 cut(s) | 2008, 2299 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 662, 2185, 2210, 2310, 2339, 2508 |
| BsmAI | GTCTC | 3 cut(s) | 1272, 1355, 2898 |
| BsmFI | GGGAC | 2 cut(s) | 2008, 2299 |
| BsnI | GGCC | 2 cut(s) | 921, 1257 |
| Bso31I | GGTCTC | 1 cut(s) | 2898 |
| BsoBI | CYCGRG | 1 cut(s) | 728 |
| Bsp119I | TTCGAA | 2 cut(s) | 1614, 2937 |
| Bsp1286I | GDGCHC | 4 cut(s) | 19, 288, 415, 544 |
| Bsp13I | TCCGGA | 1 cut(s) | 1399 |
| Bsp1407I | TGTACA | 1 cut(s) | 867 |
| Bsp19I | CCATGG | 1 cut(s) | 2924 |
| BspANI | GGCC | 2 cut(s) | 921, 1257 |
| BspCNI | CTCAG | 5 cut(s) | 205, 904, 1102, 1391, 2907 |
| BspEI | TCCGGA | 1 cut(s) | 1399 |
| BspLI | GGNNCC | 9 cut(s) | 156, 412, 447, 654, 768, 1256, 1426, 2315, 2849 |
| BspPI | GGATC | 9 cut(s) | 322, 761, 774, 1559, 1725, 1772, 2485, 2528, 2783 |
| BspQI | GCTCTTC | 1 cut(s) | 1357 |
| BspT104I | TTCGAA | 2 cut(s) | 1614, 2937 |
| BspT107I | GGYRCC | 3 cut(s) | 154, 410, 2847 |
| BspTNI | GGTCTC | 1 cut(s) | 2898 |
| BsrDI | GCAATG | 2 cut(s) | 1755, 2030 |
| BsrFI | RCCGGY | 2 cut(s) | 2167, 2339 |
| BsrGI | TGTACA | 1 cut(s) | 867 |
| BsrI | ACTGG | 7 cut(s) | 400, 548, 1125, 1286, 2053, 2668, 2879 |
| BssAI | RCCGGY | 2 cut(s) | 2167, 2339 |
| BssNAI | GTATAC | 1 cut(s) | 964 |
| BssT1I | CCWWGG | 4 cut(s) | 825, 1705, 2473, 2924 |
| Bst1107I | GTATAC | 1 cut(s) | 964 |
| Bst2UI | CCWGG | 5 cut(s) | 806, 1330, 1357, 1643, 2133 |
| Bst4CI | ACNGT | 9 cut(s) | 125, 594, 719, 798, 816, 1372, 1538, 2089, 2763 |
| Bst6I | CTCTTC | 3 cut(s) | 514, 599, 1357 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2368 |
| BstAUI | TGTACA | 1 cut(s) | 867 |
| BstBAI | YACGTR | 3 cut(s) | 371, 407, 1943 |
| BstBI | TTCGAA | 2 cut(s) | 1614, 2937 |
| BstC8I | GCNNGC | 5 cut(s) | 735, 877, 881, 2071, 2169 |
| BstDEI | CTNAG | 7 cut(s) | 213, 891, 1110, 1154, 1378, 2520, 2915 |
| BstDSI | CCRYGG | 1 cut(s) | 2924 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2506 |
| BstMAI | GTCTC | 3 cut(s) | 1272, 1355, 2898 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1322, 1472, 1539, 1796, 2368, 2834 |
| BstNI | CCWGG | 5 cut(s) | 806, 1330, 1357, 1643, 2133 |
| BstNSI | RCATGY | 4 cut(s) | 868, 879, 1606, 1837 |
| BstSCI | CCNGG | 8 cut(s) | 727, 728, 804, 1328, 1355, 1641, 1991, 2131 |
| BstSFI | CTRYAG | 1 cut(s) | 1080 |
| BstSLI | GKGCMC | 3 cut(s) | 288, 415, 544 |
| BstV1I | GCAGC | 5 cut(s) | 143, 154, 345, 1337, 2840 |
| BstX2I | RGATCY | 3 cut(s) | 327, 766, 1964 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 407 |
| BstYI | RGATCY | 3 cut(s) | 327, 766, 1964 |
| BstZ17I | GTATAC | 1 cut(s) | 964 |
| BsuI | GTATCC | 1 cut(s) | 1134 |
| BsuRI | GGCC | 2 cut(s) | 921, 1257 |
| BtgI | CCRYGG | 1 cut(s) | 2924 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 5 cut(s) | 105, 130, 1132, 1799, 2046 |
| Cac8I | GCNNGC | 5 cut(s) | 735, 877, 881, 2071, 2169 |
| Cfr10I | RCCGGY | 2 cut(s) | 2167, 2339 |
| Cfr13I | GGNCC | 4 cut(s) | 79, 974, 1255, 2313 |
| Cfr9I | CCCGGG | 1 cut(s) | 728 |
| Csp6I | GTAC | 5 cut(s) | 868, 1104, 1657, 2345, 2848 |
| CspAI | ACCGGT | 1 cut(s) | 2339 |
| CviQI | GTAC | 5 cut(s) | 868, 1104, 1657, 2345, 2848 |
| DdeI | CTNAG | 7 cut(s) | 213, 891, 1110, 1154, 1378, 2520, 2915 |
| DraI | TTTAAA | 2 cut(s) | 382, 1816 |
| DraIII | CACNNNGTG | 1 cut(s) | 2185 |
| DriI | GACNNNNNGTC | 2 cut(s) | 2372, 2713 |
| Eam1104I | CTCTTC | 3 cut(s) | 514, 599, 1357 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 2372, 2713 |
| EarI | CTCTTC | 3 cut(s) | 514, 599, 1357 |
| EciI | GGCGGA | 3 cut(s) | 34, 191, 1437 |
| Ecl136II | GAGCTC | 1 cut(s) | 17 |
| Eco130I | CCWWGG | 4 cut(s) | 825, 1705, 2473, 2924 |
| Eco147I | AGGCCT | 1 cut(s) | 921 |
| Eco24I | GRGCYC | 1 cut(s) | 19 |
| Eco31I | GGTCTC | 1 cut(s) | 2898 |
| Eco32I | GATATC | 4 cut(s) | 210, 1024, 1461, 2812 |
| Eco47I | GGWCC | 3 cut(s) | 79, 974, 2313 |
| Eco53kI | GAGCTC | 1 cut(s) | 17 |
| Eco57I | CTGAAG | 4 cut(s) | 623, 1038, 1871, 2667 |
| Eco72I | CACGTG | 1 cut(s) | 371 |
| Eco88I | CYCGRG | 1 cut(s) | 728 |
| EcoICRI | GAGCTC | 1 cut(s) | 17 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2506 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1255 |
| EcoRI | GAATTC | 1 cut(s) | 1225 |
| EcoRII | CCWGG | 5 cut(s) | 804, 1328, 1355, 1641, 2131 |
| EcoRV | GATATC | 4 cut(s) | 210, 1024, 1461, 2812 |
| EcoT14I | CCWWGG | 4 cut(s) | 825, 1705, 2473, 2924 |
| EcoT38I | GRGCYC | 1 cut(s) | 19 |
| ErhI | CCWWGG | 4 cut(s) | 825, 1705, 2473, 2924 |
| FaqI | GGGAC | 2 cut(s) | 2008, 2299 |
| FblI | GTMKAC | 1 cut(s) | 963 |
| Fnu4HI | GCNGC | 7 cut(s) | 48, 132, 143, 359, 1326, 2360, 2829 |
| FriOI | GRGCYC | 1 cut(s) | 19 |
| Fsp4HI | GCNGC | 7 cut(s) | 48, 132, 143, 359, 1326, 2360, 2829 |
| FspBI | CTAG | 6 cut(s) | 761, 774, 1196, 1982, 2348, 2508 |
| GluI | GCNGC | 7 cut(s) | 48, 132, 143, 359, 1326, 2360, 2829 |
| GsaI | CCCAGC | 2 cut(s) | 463, 2615 |
| GsuI | CTGGAG | 1 cut(s) | 2154 |
| HaeIII | GGCC | 2 cut(s) | 921, 1257 |
| HapII | CCGG | 7 cut(s) | 349, 624, 729, 1400, 1992, 2168, 2340 |
| HincII | GTYRAC | 1 cut(s) | 1682 |
| HindII | GTYRAC | 1 cut(s) | 1682 |
| HindIII | AAGCTT | 2 cut(s) | 320, 2444 |
| HpaII | CCGG | 7 cut(s) | 349, 624, 729, 1400, 1992, 2168, 2340 |
| HphI | GGTGA | 6 cut(s) | 115, 888, 1187, 1301, 2024, 2665 |
| Hpy99I | CGWCG | 1 cut(s) | 1210 |
| HpyAV | CCTTC | 7 cut(s) | 563, 911, 1245, 1757, 1789, 2266, 2512 |
| HpyCH4III | ACNGT | 9 cut(s) | 125, 594, 719, 798, 816, 1372, 1538, 2089, 2763 |
| HpyCH4IV | ACGT | 3 cut(s) | 370, 406, 1942 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1322, 1472, 1539, 1796, 2368, 2834 |
| HpyF3I | CTNAG | 7 cut(s) | 213, 891, 1110, 1154, 1378, 2520, 2915 |
| HpySE526I | ACGT | 3 cut(s) | 370, 406, 1942 |
| Kpn2I | TCCGGA | 1 cut(s) | 1399 |
| KpnI | GGTACC | 1 cut(s) | 2851 |
| KroI | GCCGGC | 1 cut(s) | 2167 |
| KroNI | GCCGGC | 1 cut(s) | 2169 |
| LguI | GCTCTTC | 1 cut(s) | 1357 |
| LmnI | GCTCC | 7 cut(s) | 14, 22, 95, 451, 523, 658, 1650 |
| Lsp1109I | GCAGC | 5 cut(s) | 143, 154, 345, 1337, 2840 |
| LweI | GCATC | 9 cut(s) | 57, 191, 504, 1062, 1881, 1919, 2235, 2566, 2846 |
| MaeI | CTAG | 6 cut(s) | 761, 774, 1196, 1982, 2348, 2508 |
| MaeII | ACGT | 3 cut(s) | 370, 406, 1942 |
| MflI | RGATCY | 3 cut(s) | 327, 766, 1964 |
| MhlI | GDGCHC | 4 cut(s) | 19, 288, 415, 544 |
| MlyI | GAGTC | 5 cut(s) | 40, 1219, 2432, 2723, 2782 |
| MmeI | TCCRAC | 2 cut(s) | 1592, 2476 |
| MroI | TCCGGA | 1 cut(s) | 1399 |
| MroNI | GCCGGC | 1 cut(s) | 2167 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1395, 1767, 2447 |
| MslI | CAYNNNNRTG | 2 cut(s) | 535, 2842 |
| MspA1I | CMGCKG | 2 cut(s) | 459, 1759 |
| MspI | CCGG | 7 cut(s) | 349, 624, 729, 1400, 1992, 2168, 2340 |
| MspR9I | CCNGG | 8 cut(s) | 729, 730, 806, 1330, 1357, 1643, 1993, 2133 |
| MvaI | CCWGG | 5 cut(s) | 806, 1330, 1357, 1643, 2133 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1322, 1472, 1539, 1796, 2368, 2834 |
| NaeI | GCCGGC | 1 cut(s) | 2169 |
| NciI | CCSGG | 3 cut(s) | 729, 730, 1993 |
| NcoI | CCATGG | 1 cut(s) | 2924 |
| NgoMIV | GCCGGC | 1 cut(s) | 2167 |
| NlaIV | GGNNCC | 9 cut(s) | 156, 412, 447, 654, 768, 1256, 1426, 2315, 2849 |
| NmeAIII | GCCGAG | 1 cut(s) | 2099 |
| NmuCI | GTSAC | 8 cut(s) | 32, 146, 184, 256, 611, 894, 2405, 2585 |
| NspI | RCATGY | 4 cut(s) | 868, 879, 1606, 1837 |
| NspV | TTCGAA | 2 cut(s) | 1614, 2937 |
| PaeI | GCATGC | 1 cut(s) | 879 |
| PceI | AGGCCT | 1 cut(s) | 921 |
| PciI | ACATGT | 1 cut(s) | 864 |
| PciSI | GCTCTTC | 1 cut(s) | 1357 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1003 |
| PdiI | GCCGGC | 1 cut(s) | 2169 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1395, 1767, 2447 |
| PfeI | GAWTC | 7 cut(s) | 684, 886, 1616, 1753, 1768, 2327, 2556 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2185, 2310 |
| PinAI | ACCGGT | 1 cut(s) | 2339 |
| PkrI | GCNGC | 7 cut(s) | 49, 133, 144, 360, 1327, 2361, 2830 |
| PleI | GAGTC | 5 cut(s) | 39, 1218, 2431, 2722, 2781 |
| PmaCI | CACGTG | 1 cut(s) | 371 |
| PmlI | CACGTG | 1 cut(s) | 371 |
| PpsI | GAGTC | 5 cut(s) | 39, 1218, 2431, 2722, 2781 |
| Ppu21I | YACGTR | 3 cut(s) | 371, 407, 1943 |
| PscI | ACATGT | 1 cut(s) | 864 |
| PshBI | ATTAAT | 1 cut(s) | 2571 |
| PsiI | TTATAA | 3 cut(s) | 426, 756, 1860 |
| Psp124BI | GAGCTC | 1 cut(s) | 19 |
| Psp6I | CCWGG | 5 cut(s) | 804, 1328, 1355, 1641, 2131 |
| PspCI | CACGTG | 1 cut(s) | 371 |
| PspFI | CCCAGC | 2 cut(s) | 459, 2611 |
| PspGI | CCWGG | 5 cut(s) | 804, 1328, 1355, 1641, 2131 |
| PspN4I | GGNNCC | 9 cut(s) | 156, 412, 447, 654, 768, 1256, 1426, 2315, 2849 |
| PspPI | GGNCC | 4 cut(s) | 79, 974, 1255, 2313 |
| PsuI | RGATCY | 3 cut(s) | 327, 766, 1964 |
| PvuII | CAGCTG | 1 cut(s) | 1759 |
| RsaI | GTAC | 5 cut(s) | 869, 1105, 1658, 2346, 2849 |
| RsaNI | GTAC | 5 cut(s) | 868, 1104, 1657, 2345, 2848 |
| RseI | CAYNNNNRTG | 2 cut(s) | 535, 2842 |
| SacI | GAGCTC | 1 cut(s) | 19 |
| SapI | GCTCTTC | 1 cut(s) | 1357 |
| SatI | GCNGC | 7 cut(s) | 48, 132, 143, 359, 1326, 2360, 2829 |
| Sau96I | GGNCC | 4 cut(s) | 79, 974, 1255, 2313 |
| ScaI | AGTACT | 1 cut(s) | 1105 |
| SchI | GAGTC | 5 cut(s) | 40, 1219, 2432, 2723, 2782 |
| ScrFI | CCNGG | 8 cut(s) | 729, 730, 806, 1330, 1357, 1643, 1993, 2133 |
| SduI | GDGCHC | 4 cut(s) | 19, 288, 415, 544 |
| SfaNI | GCATC | 9 cut(s) | 57, 191, 504, 1062, 1881, 1919, 2235, 2566, 2846 |
| SfcI | CTRYAG | 1 cut(s) | 1080 |
| SfuI | TTCGAA | 2 cut(s) | 1614, 2937 |
| SinI | GGWCC | 3 cut(s) | 79, 974, 2313 |
| SmaI | CCCGGG | 1 cut(s) | 730 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 535, 2842 |
| SmlI | CTYRAG | 2 cut(s) | 6, 323 |
| SmoI | CTYRAG | 2 cut(s) | 6, 323 |
| SpeI | ACTAGT | 1 cut(s) | 2347 |
| SphI | GCATGC | 1 cut(s) | 879 |
| SseBI | AGGCCT | 1 cut(s) | 921 |
| SspI | AATATT | 1 cut(s) | 1433 |
| SspMI | CTAG | 6 cut(s) | 761, 774, 1196, 1982, 2348, 2508 |
| SstI | GAGCTC | 1 cut(s) | 19 |
| StuI | AGGCCT | 1 cut(s) | 921 |
| StyD4I | CCNGG | 8 cut(s) | 727, 728, 804, 1328, 1355, 1641, 1991, 2131 |
| StyI | CCWWGG | 4 cut(s) | 825, 1705, 2473, 2924 |
| TaaI | ACNGT | 9 cut(s) | 125, 594, 719, 798, 816, 1372, 1538, 2089, 2763 |
| TaiI | ACGT | 3 cut(s) | 373, 409, 1945 |
| TaqI | TCGA | 8 cut(s) | 466, 1026, 1208, 1563, 1614, 2717, 2769, 2937 |
| TatI | WGTACW | 3 cut(s) | 867, 1103, 2344 |
| TauI | GCSGC | 2 cut(s) | 50, 2362 |
| TfiI | GAWTC | 7 cut(s) | 684, 886, 1616, 1753, 1768, 2327, 2556 |
| TscAI | CASTG | 5 cut(s) | 105, 130, 1132, 1806, 2053 |
| TseFI | GTSAC | 8 cut(s) | 32, 146, 184, 256, 611, 894, 2405, 2585 |
| TseI | GCWGC | 5 cut(s) | 131, 142, 358, 1325, 2828 |
| Tsp45I | GTSAC | 8 cut(s) | 32, 146, 184, 256, 611, 894, 2405, 2585 |
| TspGWI | ACGGA | 1 cut(s) | 1461 |
| TspMI | CCCGGG | 1 cut(s) | 728 |
| TspRI | CASTG | 5 cut(s) | 105, 130, 1132, 1806, 2053 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2185, 2310 |
| VneI | GTGCAC | 2 cut(s) | 284, 540 |
| VpaK11BI | GGWCC | 3 cut(s) | 79, 974, 2313 |
| VspI | ATTAAT | 1 cut(s) | 2571 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2506 |
| XapI | RAATTY | 4 cut(s) | 40, 700, 1225, 1469 |
| XbaI | TCTAGA | 1 cut(s) | 1981 |
| XceI | RCATGY | 4 cut(s) | 868, 879, 1606, 1837 |
| XmaI | CCCGGG | 1 cut(s) | 728 |
| XmiI | GTMKAC | 1 cut(s) | 963 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1395, 1767, 2447 |
| XspI | CTAG | 6 cut(s) | 761, 774, 1196, 1982, 2348, 2508 |
| ZrmI | AGTACT | 1 cut(s) | 1105 |