Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Semialdhyde_dh | PF01118 | 43 - 81 | 1.1e-06 | Semialdehyde dehydrogenase, NAD binding domain |
| Semialdhyde_dhC | PF02774 | 161 - 325 | 3e-42 | Semialdehyde dehydrogenase, dimerisation domain |
| RRM_RdRP1_2 | PF26250 | 409 - 484 | 1.7e-12 | RdRP1/2, RRM domain |
| PH_RDR2 | PF24823 | 502 - 637 | 1.3e-30 | RDR2 PH-like domain |
| RdRP | PF05183 | 728 - 1297 | 1e-199 | RNA dependent RNA polymerase |
| RdRP_head | PF26253 | 1321 - 1440 | 1.6e-33 | RdRP, head domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1740, 3099 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 740 |
| Acc16I | TGCGCA | 1 cut(s) | 3672 |
| Acc65I | GGTACC | 1 cut(s) | 4278 |
| AccB1I | GGYRCC | 5 cut(s) | 41, 149, 1468, 1724, 4278 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1331, 3424 |
| AccBSI | CCGCTC | 1 cut(s) | 204 |
| AccI | GTMKAC | 5 cut(s) | 310, 1283, 2169, 2199, 3756 |
| AccII | CGCG | 2 cut(s) | 93, 189 |
| AccIII | TCCGGA | 2 cut(s) | 96, 1937 |
| AcoI | YGGCCR | 3 cut(s) | 3, 157, 946 |
| AcsI | RAATTY | 7 cut(s) | 809, 1268, 1942, 2014, 2464, 2708, 3183 |
| AcuI | CTGAAG | 5 cut(s) | 308, 872, 1937, 2274, 4098 |
| AcvI | CACGTG | 1 cut(s) | 1685 |
| AcyI | GRCGYC | 4 cut(s) | 42, 141, 150, 307 |
| AdeI | CACNNNGTG | 1 cut(s) | 3424 |
| AfaI | GTAC | 6 cut(s) | 523, 998, 1424, 2096, 2897, 4280 |
| AfeI | AGCGCT | 2 cut(s) | 230, 329 |
| AflII | CTTAAG | 1 cut(s) | 2087 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4144 |
| AhlI | ACTAGT | 2 cut(s) | 703, 1198 |
| AjiI | CACGTC | 2 cut(s) | 358, 3403 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2660, 2692 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2026, 2058, 3035, 3067 |
| Alw21I | GWGCWC | 5 cut(s) | 286, 1602, 1644, 1858, 4192 |
| Alw26I | GTCTC | 7 cut(s) | 254, 707, 1254, 2511, 2594, 3519, 4330 |
| Alw44I | GTGCAC | 2 cut(s) | 1598, 1854 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1773 |
| Ama87I | CYCGRG | 2 cut(s) | 1446, 3478 |
| Aor13HI | TCCGGA | 2 cut(s) | 96, 1937 |
| Aor51HI | AGCGCT | 2 cut(s) | 230, 329 |
| ApaLI | GTGCAC | 2 cut(s) | 1598, 1854 |
| ApoI | RAATTY | 7 cut(s) | 809, 1268, 1942, 2014, 2464, 2708, 3183 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2810, 2842 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2634, 3006, 3878 |
| Asp718I | GGTACC | 1 cut(s) | 4278 |
| AspA2I | CCTAGG | 2 cut(s) | 1867, 1975 |
| AspLEI | GCGC | 9 cut(s) | 44, 152, 231, 330, 430, 1028, 2029, 3031, 3673 |
| AspS9I | GGNCC | 5 cut(s) | 103, 119, 239, 260, 2210 |
| AsuC2I | CCSGG | 2 cut(s) | 73, 386 |
| AsuII | TTCGAA | 3 cut(s) | 2853, 3990, 4369 |
| AvaI | CYCGRG | 2 cut(s) | 1446, 3478 |
| AvaII | GGWCC | 1 cut(s) | 2210 |
| AvrII | CCTAGG | 2 cut(s) | 1867, 1975 |
| BaeGI | GKGCMC | 4 cut(s) | 787, 1602, 1729, 1858 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4095, 4128 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 1 cut(s) | 3908 |
| BanI | GGYRCC | 5 cut(s) | 41, 149, 1468, 1724, 4278 |
| BanII | GRGCYC | 2 cut(s) | 286, 1644 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2067, 2099, 4071, 4103 |
| BbrPI | CACGTG | 1 cut(s) | 1685 |
| Bbv12I | GWGCWC | 5 cut(s) | 286, 1602, 1644, 1858, 4192 |
| BbvCI | CCTCAGC | 2 cut(s) | 3568, 4270 |
| BceAI | ACGGC | 6 cut(s) | 116, 137, 320, 346, 942, 3100 |
| BciVI | GTATCC | 1 cut(s) | 2373 |
| BclI | TGATCA | 2 cut(s) | 1687, 2925 |
| BcnI | CCSGG | 2 cut(s) | 73, 386 |
| BcoDI | GTCTC | 7 cut(s) | 254, 707, 1254, 2511, 2594, 3519, 4330 |
| BcuI | ACTAGT | 2 cut(s) | 703, 1198 |
| BfaI | CTAG | 9 cut(s) | 537, 704, 1199, 1868, 1976, 2364, 2435, 3221, 3905 |
| BfmI | CTRYAG | 3 cut(s) | 1371, 2316, 3539 |
| BfoI | RGCGCY | 5 cut(s) | 45, 153, 232, 331, 431 |
| BfrI | CTTAAG | 1 cut(s) | 2087 |
| BfuI | GTATCC | 1 cut(s) | 2373 |
| BglII | AGATCT | 1 cut(s) | 3203 |
| BlnI | CCTAGG | 2 cut(s) | 1867, 1975 |
| Bme18I | GGWCC | 1 cut(s) | 2210 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4144 |
| BmeT110I | CYCGRG | 2 cut(s) | 1446, 3478 |
| BmgBI | CACGTC | 2 cut(s) | 358, 3403 |
| BmgT120I | GGNCC | 5 cut(s) | 103, 119, 239, 260, 2210 |
| BmrI | ACTGGG | 2 cut(s) | 1783, 4315 |
| BmuI | ACTGGG | 2 cut(s) | 1783, 4315 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 155, 187 |
| BpmI | CTGGAG | 4 cut(s) | 92, 1236, 1295, 3393 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3568, 4270 |
| Bpu14I | TTCGAA | 3 cut(s) | 2853, 3990, 4369 |
| BpuEI | CTTGAG | 2 cut(s) | 590, 1658 |
| BpuMI | CCSGG | 2 cut(s) | 73, 386 |
| BsaAI | YACGTR | 3 cut(s) | 525, 1685, 1721 |
| BsaHI | GRCGYC | 4 cut(s) | 42, 141, 150, 307 |
| BsaI | GGTCTC | 3 cut(s) | 707, 3519, 4330 |
| BsaWI | WCCGGW | 3 cut(s) | 96, 1286, 1937 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1919, 1949 |
| Bse118I | RCCGGY | 4 cut(s) | 146, 236, 288, 3406 |
| Bse1I | ACTGG | 8 cut(s) | 605, 1714, 1778, 2525, 3045, 3292, 3775, 4310 |
| Bse3DI | GCAATG | 2 cut(s) | 2994, 3269 |
| BseAI | TCCGGA | 2 cut(s) | 96, 1937 |
| BseMI | GCAATG | 2 cut(s) | 2994, 3269 |
| BseMII | CTCAG | 8 cut(s) | 783, 1518, 2145, 3570, 3582, 4082, 4284, 4338 |
| BseNI | ACTGG | 8 cut(s) | 605, 1714, 1778, 2525, 3045, 3292, 3775, 4310 |
| BseRI | GAGGAG | 6 cut(s) | 294, 1292, 1544, 2984, 3632, 4217 |
| BseSI | GKGCMC | 4 cut(s) | 787, 1602, 1729, 1858 |
| BseYI | CCCAGC | 2 cut(s) | 3516, 4042 |
| BsgI | GTGCAG | 2 cut(s) | 2364, 2487 |
| Bsh1236I | CGCG | 2 cut(s) | 93, 189 |
| Bsh1285I | CGRYCG | 1 cut(s) | 187 |
| BshNI | GGYRCC | 5 cut(s) | 41, 149, 1468, 1724, 4278 |
| BsiEI | CGRYCG | 1 cut(s) | 187 |
| BsiHKAI | GWGCWC | 5 cut(s) | 286, 1602, 1644, 1858, 4192 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1446, 3478 |
| BslFI | GGGAC | 2 cut(s) | 55, 952 |
| BsmAI | GTCTC | 7 cut(s) | 254, 707, 1254, 2511, 2594, 3519, 4330 |
| BsmFI | GGGAC | 2 cut(s) | 55, 952 |
| BsmI | GAATGC | 2 cut(s) | 48, 3479 |
| Bso31I | GGTCTC | 3 cut(s) | 707, 3519, 4330 |
| BsoBI | CYCGRG | 2 cut(s) | 1446, 3478 |
| Bsp119I | TTCGAA | 3 cut(s) | 2853, 3990, 4369 |
| Bsp1286I | GDGCHC | 7 cut(s) | 286, 787, 1602, 1644, 1729, 1858, 4192 |
| Bsp13I | TCCGGA | 2 cut(s) | 96, 1937 |
| Bsp19I | CCATGG | 2 cut(s) | 393, 4356 |
| BspCNI | CTCAG | 8 cut(s) | 784, 1519, 2144, 3571, 3581, 4083, 4283, 4339 |
| BspEI | TCCGGA | 2 cut(s) | 96, 1937 |
| BspFNI | CGCG | 2 cut(s) | 93, 189 |
| BspHI | TCATGA | 2 cut(s) | 583, 3592 |
| BspMAI | CTGCAG | 2 cut(s) | 1375, 3543 |
| BspQI | GCTCTTC | 1 cut(s) | 2596 |
| BspT104I | TTCGAA | 3 cut(s) | 2853, 3990, 4369 |
| BspT107I | GGYRCC | 5 cut(s) | 41, 149, 1468, 1724, 4278 |
| BspTI | CTTAAG | 1 cut(s) | 2087 |
| BspTNI | GGTCTC | 3 cut(s) | 707, 3519, 4330 |
| BsrBI | CCGCTC | 1 cut(s) | 204 |
| BsrDI | GCAATG | 2 cut(s) | 2994, 3269 |
| BsrFI | RCCGGY | 4 cut(s) | 146, 236, 288, 3406 |
| BsrI | ACTGG | 8 cut(s) | 605, 1714, 1778, 2525, 3045, 3292, 3775, 4310 |
| BssAI | RCCGGY | 4 cut(s) | 146, 236, 288, 3406 |
| BssNAI | GTATAC | 3 cut(s) | 1284, 2170, 2200 |
| BssNI | GRCGYC | 4 cut(s) | 42, 141, 150, 307 |
| BssT1I | CCWWGG | 7 cut(s) | 393, 1867, 1975, 2052, 2944, 3055, 4356 |
| Bst1107I | GTATAC | 3 cut(s) | 1284, 2170, 2200 |
| Bst6I | CTCTTC | 7 cut(s) | 38, 327, 684, 1828, 1913, 2343, 2596 |
| BstACI | GRCGYC | 4 cut(s) | 42, 141, 150, 307 |
| BstAFI | CTTAAG | 1 cut(s) | 2087 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1379 |
| BstBAI | YACGTR | 3 cut(s) | 525, 1685, 1721 |
| BstBI | TTCGAA | 3 cut(s) | 2853, 3990, 4369 |
| BstDSI | CCRYGG | 2 cut(s) | 393, 4356 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 827 |
| BstFNI | CGCG | 2 cut(s) | 93, 189 |
| BstH2I | RGCGCY | 5 cut(s) | 45, 153, 232, 331, 431 |
| BstHHI | GCGC | 9 cut(s) | 44, 152, 231, 330, 430, 1028, 2029, 3031, 3673 |
| BstMAI | GTCTC | 7 cut(s) | 254, 707, 1254, 2511, 2594, 3519, 4330 |
| BstMCI | CGRYCG | 1 cut(s) | 187 |
| BstNSI | RCATGY | 6 cut(s) | 743, 762, 791, 2115, 2168, 2845 |
| BstSFI | CTRYAG | 3 cut(s) | 1371, 2316, 3539 |
| BstSLI | GKGCMC | 4 cut(s) | 787, 1602, 1729, 1858 |
| BstSNI | TACGTA | 1 cut(s) | 525 |
| BstUI | CGCG | 2 cut(s) | 93, 189 |
| BstX2I | RGATCY | 2 cut(s) | 3203, 3908 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1721, 3238 |
| BstYI | RGATCY | 2 cut(s) | 3203, 3908 |
| BstZ17I | GTATAC | 3 cut(s) | 1284, 2170, 2200 |
| BsuI | GTATCC | 1 cut(s) | 2373 |
| BtgI | CCRYGG | 2 cut(s) | 393, 4356 |
| BtgZI | GCGATG | 3 cut(s) | 112, 299, 473 |
| BtrI | CACGTC | 2 cut(s) | 358, 3403 |
| BtsI | GCAGTG | 1 cut(s) | 3490 |
| BtsIMutI | CAGTG | 5 cut(s) | 1239, 1771, 3038, 3285, 3490 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1773 |
| CciI | TCATGA | 2 cut(s) | 583, 3592 |
| CfoI | GCGC | 9 cut(s) | 44, 152, 231, 330, 430, 1028, 2029, 3031, 3673 |
| Cfr10I | RCCGGY | 4 cut(s) | 146, 236, 288, 3406 |
| Cfr13I | GGNCC | 5 cut(s) | 103, 119, 239, 260, 2210 |
| CseI | GACGC | 4 cut(s) | 82, 130, 296, 2315 |
| Csp6I | GTAC | 6 cut(s) | 522, 997, 1423, 2095, 2896, 4279 |
| CviQI | GTAC | 6 cut(s) | 522, 997, 1423, 2095, 2896, 4279 |
| DinI | GGCGCC | 2 cut(s) | 43, 151 |
| DraIII | CACNNNGTG | 1 cut(s) | 3424 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 740 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4144 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 740 |
| EaeI | YGGCCR | 3 cut(s) | 3, 157, 946 |
| Eam1104I | CTCTTC | 7 cut(s) | 38, 327, 684, 1828, 1913, 2343, 2596 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4144 |
| EarI | CTCTTC | 7 cut(s) | 38, 327, 684, 1828, 1913, 2343, 2596 |
| EciI | GGCGGA | 3 cut(s) | 223, 944, 2676 |
| Ecl136II | GAGCTC | 2 cut(s) | 284, 1642 |
| Eco105I | TACGTA | 1 cut(s) | 525 |
| Eco130I | CCWWGG | 7 cut(s) | 393, 1867, 1975, 2052, 2944, 3055, 4356 |
| Eco147I | AGGCCT | 3 cut(s) | 1416, 2496, 3460 |
| Eco24I | GRGCYC | 2 cut(s) | 286, 1644 |
| Eco31I | GGTCTC | 3 cut(s) | 707, 3519, 4330 |
| Eco32I | GATATC | 5 cut(s) | 1524, 2260, 2700, 3898, 4243 |
| Eco47I | GGWCC | 1 cut(s) | 2210 |
| Eco47III | AGCGCT | 2 cut(s) | 230, 329 |
| Eco53kI | GAGCTC | 2 cut(s) | 284, 1642 |
| Eco57I | CTGAAG | 5 cut(s) | 308, 872, 1937, 2274, 4098 |
| Eco72I | CACGTG | 1 cut(s) | 1685 |
| Eco88I | CYCGRG | 2 cut(s) | 1446, 3478 |
| EcoICRI | GAGCTC | 2 cut(s) | 284, 1642 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 827 |
| EcoRI | GAATTC | 1 cut(s) | 2464 |
| EcoRV | GATATC | 5 cut(s) | 1524, 2260, 2700, 3898, 4243 |
| EcoT14I | CCWWGG | 7 cut(s) | 393, 1867, 1975, 2052, 2944, 3055, 4356 |
| EcoT22I | ATGCAT | 1 cut(s) | 764 |
| EcoT38I | GRGCYC | 2 cut(s) | 286, 1644 |
| EgeI | GGCGCC | 2 cut(s) | 43, 151 |
| EheI | GGCGCC | 2 cut(s) | 43, 151 |
| ErhI | CCWWGG | 7 cut(s) | 393, 1867, 1975, 2052, 2944, 3055, 4356 |
| FaqI | GGGAC | 2 cut(s) | 55, 952 |
| FauI | CCCGC | 2 cut(s) | 53, 774 |
| FbaI | TGATCA | 2 cut(s) | 1687, 2925 |
| FblI | GTMKAC | 5 cut(s) | 310, 1283, 2169, 2199, 3756 |
| FriOI | GRGCYC | 2 cut(s) | 286, 1644 |
| FspAI | RTGCGCAY | 1 cut(s) | 3672 |
| FspBI | CTAG | 9 cut(s) | 537, 704, 1199, 1868, 1976, 2364, 2435, 3221, 3905 |
| FspI | TGCGCA | 1 cut(s) | 3672 |
| GlaI | GCGC | 9 cut(s) | 43, 151, 230, 329, 429, 1027, 2028, 3030, 3672 |
| GsaI | CCCAGC | 2 cut(s) | 3520, 4046 |
| GsuI | CTGGAG | 4 cut(s) | 92, 1236, 1295, 3393 |
| HaeII | RGCGCY | 5 cut(s) | 45, 153, 232, 331, 431 |
| HgaI | GACGC | 4 cut(s) | 82, 130, 296, 2315 |
| HhaI | GCGC | 9 cut(s) | 44, 152, 231, 330, 430, 1028, 2029, 3031, 3673 |
| Hin1I | GRCGYC | 4 cut(s) | 42, 141, 150, 307 |
| Hin6I | GCGC | 9 cut(s) | 42, 150, 229, 328, 428, 1026, 2027, 3029, 3671 |
| HinP1I | GCGC | 9 cut(s) | 42, 150, 229, 328, 428, 1026, 2027, 3029, 3671 |
| HincII | GTYRAC | 3 cut(s) | 311, 2921, 3757 |
| HindII | GTYRAC | 3 cut(s) | 311, 2921, 3757 |
| HindIII | AAGCTT | 3 cut(s) | 1634, 2155, 3875 |
| Hpy99I | CGWCG | 8 cut(s) | 137, 140, 158, 276, 279, 306, 312, 359 |
| HpyCH4IV | ACGT | 6 cut(s) | 271, 357, 524, 1684, 1720, 3402 |
| HpySE526I | ACGT | 6 cut(s) | 271, 357, 524, 1684, 1720, 3402 |
| Hsp92I | GRCGYC | 4 cut(s) | 42, 141, 150, 307 |
| HspAI | GCGC | 9 cut(s) | 42, 150, 229, 328, 428, 1026, 2027, 3029, 3671 |
| KasI | GGCGCC | 2 cut(s) | 41, 149 |
| Kpn2I | TCCGGA | 2 cut(s) | 96, 1937 |
| KpnI | GGTACC | 1 cut(s) | 4282 |
| KroI | GCCGGC | 2 cut(s) | 236, 3406 |
| KroNI | GCCGGC | 2 cut(s) | 238, 3408 |
| Ksp22I | TGATCA | 2 cut(s) | 1687, 2925 |
| LguI | GCTCTTC | 1 cut(s) | 2596 |
| MaeI | CTAG | 9 cut(s) | 537, 704, 1199, 1868, 1976, 2364, 2435, 3221, 3905 |
| MaeII | ACGT | 6 cut(s) | 271, 357, 524, 1684, 1720, 3402 |
| MbiI | CCGCTC | 1 cut(s) | 204 |
| MfeI | CAATTG | 1 cut(s) | 1183 |
| MflI | RGATCY | 2 cut(s) | 3203, 3908 |
| MhlI | GDGCHC | 7 cut(s) | 286, 787, 1602, 1644, 1729, 1858, 4192 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| Mly113I | GGCGCC | 2 cut(s) | 42, 150 |
| MlyI | GAGTC | 9 cut(s) | 107, 1061, 1256, 1439, 3001, 3629, 3752, 3863, 4154 |
| MmeI | TCCRAC | 3 cut(s) | 2593, 2831, 3907 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 1 cut(s) | 764 |
| MroI | TCCGGA | 2 cut(s) | 96, 1937 |
| MroNI | GCCGGC | 2 cut(s) | 236, 3406 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2634, 3006, 3878 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 6 cut(s) | 53, 212, 1849, 3395, 3468, 3747 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 3 cut(s) | 628, 665, 2998 |
| MspCI | CTTAAG | 1 cut(s) | 2087 |
| MunI | CAATTG | 1 cut(s) | 1183 |
| Mva1269I | GAATGC | 2 cut(s) | 48, 3479 |
| MvnI | CGCG | 2 cut(s) | 93, 189 |
| NaeI | GCCGGC | 2 cut(s) | 238, 3408 |
| NarI | GGCGCC | 2 cut(s) | 42, 150 |
| NciI | CCSGG | 2 cut(s) | 73, 386 |
| NcoI | CCATGG | 2 cut(s) | 393, 4356 |
| NgoMIV | GCCGGC | 2 cut(s) | 236, 3406 |
| NmeAIII | GCCGAG | 1 cut(s) | 314 |
| NmuCI | GTSAC | 7 cut(s) | 142, 1261, 1460, 1498, 1570, 1883, 2537 |
| NsbI | TGCGCA | 1 cut(s) | 3672 |
| NsiI | ATGCAT | 1 cut(s) | 764 |
| NspI | RCATGY | 6 cut(s) | 743, 762, 791, 2115, 2168, 2845 |
| NspV | TTCGAA | 3 cut(s) | 2853, 3990, 4369 |
| PaeI | GCATGC | 1 cut(s) | 2115 |
| PaeR7I | CTCGAG | 1 cut(s) | 1446 |
| PagI | TCATGA | 2 cut(s) | 583, 3592 |
| PceI | AGGCCT | 3 cut(s) | 1416, 2496, 3460 |
| PciSI | GCTCTTC | 1 cut(s) | 2596 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 307, 2239 |
| PctI | GAATGC | 2 cut(s) | 48, 3479 |
| PdiI | GCCGGC | 2 cut(s) | 238, 3408 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2634, 3006, 3878 |
| PfeI | GAWTC | 7 cut(s) | 817, 951, 2122, 2855, 3007, 3532, 3987 |
| PflFI | GACNNNGTC | 1 cut(s) | 306 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1331, 3424 |
| PfoI | TCCNGGA | 2 cut(s) | 71, 108 |
| PleI | GAGTC | 9 cut(s) | 107, 1060, 1255, 1438, 3000, 3628, 3752, 3862, 4153 |
| PluTI | GGCGCC | 2 cut(s) | 45, 153 |
| PmaCI | CACGTG | 1 cut(s) | 1685 |
| PmlI | CACGTG | 1 cut(s) | 1685 |
| PpsI | GAGTC | 9 cut(s) | 107, 1060, 1255, 1438, 3000, 3628, 3752, 3862, 4153 |
| Ppu21I | YACGTR | 3 cut(s) | 525, 1685, 1721 |
| PsiI | TTATAA | 2 cut(s) | 1740, 3099 |
| Psp124BI | GAGCTC | 2 cut(s) | 286, 1644 |
| PspCI | CACGTG | 1 cut(s) | 1685 |
| PspFI | CCCAGC | 2 cut(s) | 3516, 4042 |
| PspPI | GGNCC | 5 cut(s) | 103, 119, 239, 260, 2210 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2160, 2192 |
| PstI | CTGCAG | 2 cut(s) | 1375, 3543 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1773 |
| PsuI | RGATCY | 2 cut(s) | 3203, 3908 |
| PsyI | GACNNNGTC | 1 cut(s) | 306 |
| PvuII | CAGCTG | 1 cut(s) | 2998 |
| RsaI | GTAC | 6 cut(s) | 523, 998, 1424, 2096, 2897, 4280 |
| RsaNI | GTAC | 6 cut(s) | 522, 997, 1423, 2095, 2896, 4279 |
| RseI | CAYNNNNRTG | 6 cut(s) | 53, 212, 1849, 3395, 3468, 3747 |
| SacI | GAGCTC | 2 cut(s) | 286, 1644 |
| SalI | GTCGAC | 2 cut(s) | 309, 3755 |
| SapI | GCTCTTC | 1 cut(s) | 2596 |
| Sau96I | GGNCC | 5 cut(s) | 103, 119, 239, 260, 2210 |
| SchI | GAGTC | 9 cut(s) | 107, 1061, 1256, 1439, 3001, 3629, 3752, 3863, 4154 |
| SduI | GDGCHC | 7 cut(s) | 286, 787, 1602, 1644, 1729, 1858, 4192 |
| SfcI | CTRYAG | 3 cut(s) | 1371, 2316, 3539 |
| SfoI | GGCGCC | 2 cut(s) | 43, 151 |
| Sfr274I | CTCGAG | 1 cut(s) | 1446 |
| SfuI | TTCGAA | 3 cut(s) | 2853, 3990, 4369 |
| SgrAI | CRCCGGYG | 2 cut(s) | 146, 288 |
| SinI | GGWCC | 1 cut(s) | 2210 |
| SlaI | CTCGAG | 1 cut(s) | 1446 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 53, 212, 1849, 3395, 3468, 3747 |
| SmlI | CTYRAG | 4 cut(s) | 569, 1446, 1637, 2087 |
| SmoI | CTYRAG | 4 cut(s) | 569, 1446, 1637, 2087 |
| SnaBI | TACGTA | 1 cut(s) | 525 |
| SpeI | ACTAGT | 2 cut(s) | 703, 1198 |
| SphI | GCATGC | 1 cut(s) | 2115 |
| SseBI | AGGCCT | 3 cut(s) | 1416, 2496, 3460 |
| SspDI | GGCGCC | 2 cut(s) | 41, 149 |
| SspI | AATATT | 1 cut(s) | 2672 |
| SspMI | CTAG | 9 cut(s) | 537, 704, 1199, 1868, 1976, 2364, 2435, 3221, 3905 |
| SstI | GAGCTC | 2 cut(s) | 286, 1644 |
| StuI | AGGCCT | 3 cut(s) | 1416, 2496, 3460 |
| StyI | CCWWGG | 7 cut(s) | 393, 1867, 1975, 2052, 2944, 3055, 4356 |
| TaiI | ACGT | 6 cut(s) | 274, 360, 527, 1687, 1723, 3405 |
| TatI | WGTACW | 1 cut(s) | 2094 |
| TauI | GCSGC | 4 cut(s) | 42, 295, 631, 3793 |
| TfiI | GAWTC | 7 cut(s) | 817, 951, 2122, 2855, 3007, 3532, 3987 |
| TscAI | CASTG | 5 cut(s) | 1246, 1778, 3045, 3292, 3490 |
| TseFI | GTSAC | 7 cut(s) | 142, 1261, 1460, 1498, 1570, 1883, 2537 |
| Tsp45I | GTSAC | 7 cut(s) | 142, 1261, 1460, 1498, 1570, 1883, 2537 |
| TspGWI | ACGGA | 3 cut(s) | 163, 1440, 2700 |
| TspRI | CASTG | 5 cut(s) | 1246, 1778, 3045, 3292, 3490 |
| Tth111I | GACNNNGTC | 1 cut(s) | 306 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1331, 3424 |
| Vha464I | CTTAAG | 1 cut(s) | 2087 |
| VneI | GTGCAC | 2 cut(s) | 1598, 1854 |
| VpaK11BI | GGWCC | 1 cut(s) | 2210 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 827 |
| XapI | RAATTY | 7 cut(s) | 809, 1268, 1942, 2014, 2464, 2708, 3183 |
| XbaI | TCTAGA | 1 cut(s) | 3220 |
| XceI | RCATGY | 6 cut(s) | 743, 762, 791, 2115, 2168, 2845 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1036 |
| XhoI | CTCGAG | 1 cut(s) | 1446 |
| XmaJI | CCTAGG | 2 cut(s) | 1867, 1975 |
| XmiI | GTMKAC | 5 cut(s) | 310, 1283, 2169, 2199, 3756 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2634, 3006, 3878 |
| XspI | CTAG | 9 cut(s) | 537, 704, 1199, 1868, 1976, 2364, 2435, 3221, 3905 |
| Zsp2I | ATGCAT | 1 cut(s) | 764 |