Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001845

Physical Location & Seq

Genomic Coordinates Reverse (-)

61713848 .. 61719201

Gene Structure 5354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG402000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2316 bp

ATGTACAAGGCATGCAAGCGGATTCCTCAGTCACCAGCAATATCTTTAGATGAAGGCCTTGTGTATATACACAGGGTTCAGGTTACACCATCTAAAGTATACTTCTGTGGTCCAGAGGTAAATCTCTCCAATCGTGTTTTACGAAATTATCCTGAAGATATCGACAATTTTCTTCGTGTTTCTTTTGTTGATGAGGACTTGGGAAAGATGCGGTCTGTAGATTTGTGTCTGCGGACAAGTACTGCTGAGGAAAGGAGAACCAGTGTTTATGAAAGGATACTTTCTACTCTAAGGGATGGCATAGTGATTGGTGATAAGAAGTTTGAGTTTCTAGCATTTTCGTCGAGTCAGTTGCGAGAGAATTCTGCATGGATGTTTGCTTCCAGAAGGGGCCTTACTGCACAAGGAATTAGAGACTGGATGGGTGATTTTAGTCGCATTAAAAATGTGGCTAAATATGCAGCCAGGCTTGGTCAGTCTTTCGGCTCTTCCAGGGAGACTTTTACTGTTGGCTCAGATGAAATTGAAGTCATTCCGGATGTAGAAATTGAAAGAGGCGGAACCAAATATTGCTTCTCTGACGGAATTGGGAAGATATCTGCTGAATTTGCTGAAAGAGTGGCAAGAAAATGTGGGAAAAGTTCTACTCCATCTGCCTTTCAAATCCGCTACGGTGGCTACAAAGGTGTTGTGGCAGTCGATCCAACATCGTCAAAGAAGCTGTCATTGAGAAAGAGCATGTGGAAGTTCGAATCACGCAACACAAAGTTAGATGTCCTGGCATGGAGCAAGTACCAGCCTTGTTTTCTCAATCGTCAACTGATTACCCTTTTGTCCACCCTTGGAGTTAAGGATCATATTTTTGAGGAGAAGCAGAAACAAGCAATGAATCAGCTGGAAGGGATTCTAACTGATCCATTGAAAGCACAGAAGGCACTGAAATTGATGTTTAAAGGAGAGGCAACCAGCATGTTAAATGAAATGCTGAAGTGTTATAAGCCAAATGCAGAGCCGTTTCTCTCATTGATGCTACAATCATTATGTGCATCAAAACTTGCAGAACTGCGAAGCAAAACACGTATTTTTGTTCCAGATGGAAGATCTCTGATGGGATGTCTAGATGAAACCGGGACATTGGAATATGGTCAGGTATTTGTGCAATGTTCTCACCATGCTATCTTCACTGGCAAAACAACTTCAACTGCAAGCCGAGGCAATTTTACTGTTGTGGGTAAAGTAGTGGTTGCTAAAAACCCGTGTTTACACCCTGGAGATGTGCGTGTTCTTATGGCTGTGGATGTGCCGGCGTTACACCACATGGTGGATTGTGTTGTGTTCCCCCAAAAAGGAAAGAGGCCTCATCCTAATGAATGCTCAGGCAGCGATTTAGATGGAGATGATTACTTTGTTAGCTGGGATGGTGACCTGATTCCACCGCGGCAAACTGAACCCATGAATTATACCCTAGCACCAACTGTGGAACTGGAACATAATGTTACAATGGAGGAAGTTGAGGAGTCTTTTACCAACTATATAATGAATTGCAGCTTGGGCATCATTTCAAATGCACATCTTGTCTTTGCAGACAGAAAACCAAAGAAGGCTATGAGTGATGAATGTATTAAACTCGCCAAGCTGTGGTCCCATGCTGTTGATTCTCCAAAAACCGGTGTACTAGTGAAAGTGCCGCATAGACTGCGTGTCCATGAATACCCAGATTTCATGGAAAAGAGTGACAGGCAAACCTACGAGTCCAAGAGTGTGATTGGGAAGCTTTTCCGACAGGTAAAAGATATTGACCTTGGATCACATTCACACCCTGTTAAGTCCTTCACTAGGGAAGTGGCTAAGAGGTATTATGATCCTGACATGGAGGTAGATGGATTCAAAGATTACATTAATGATGCCATCAGTCACAAAGGCGATTATGACTACAAGCTGGGAAACCTGATGGACTATTATGGTATCAAAACTGAAGCTGAAATACTGACTGGAAACATCACCAATGTATCAAAGTTCTTCAACAAAAGAAAGGACTTGGAGTCGATCAACTACGCTGTGAGGTCATTGAAGAATGAGGCAAGGACACGGTTTATCGAGAGTCCAAATAGTGATGATCCATCAGATTTCGGAACTGATATCGGTAATGTGTATGCAGCAAAAGCATCAGCATGGTACCATGTTACATATCATCATCGTTACTGGGGTTGCTACAACAAGGGTATGGCAAGAGACCATTTCCTGAGTTTTCCATGGTGTGTTTTCGAAATGCTCATCCAGATCAAGAGGCAGAACACAAGTAATAGAAGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

771

Amino Acids

87.51

Weight (kDa)

8.71

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RdRP	PF05183	28 - 596	1.3e-195	RNA dependent RNA polymerase
RdRP_head	PF26253	620 - 767	1.3e-42	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13760 FvH4_4g33441 FvH4_4g33445
malus_domestica	MD13G1019400.v1.1 MD13G1041200.v1.1 MD16G1017600.v1.1
prunus_persica	Prupe.1G132100_v2.0.a1 Prupe.1G132200_v2.0.a1 Prupe.1G132200_v2.0.a1 Prupe.1G332600_v2.0.a1 Prupe.1G332600_v2.0.a1 Prupe.1G332600_v2.0.a1 Prupe.1G334500_v2.0.a1 Prupe.1G334500_v2.0.a1 Prupe.1G334500_v2.0.a1
pyrus_communis	pycom13g01650 pycom13g03550
rosa_chinensis	RchiOBHm_Chr2g0166231 RchiOBHm_Chr4g0442711 RchiOBHm_Chr4g0442751
rosa_laevigata	RLG00000005987 RLG00000005988 RLG00000005989 RLG00000021600
rosa_multiflora	Rmu_co8517261.1_g000001 Rmu_sc0018648.1_g000004 Rmu_sc0035717.1_g000001 Rmu_ssc0000204.1_g000023
rosa_roxburghii	Rroxscaffold_2G00085060 Rroxscaffold_5G00383520 Rroxscaffold_5G00383530 Rroxscaffold_5G00383540
rosa_rugosa	Rorug02G0521500 Rorug02G0521600
rosa_samantha	Rh2AG587500 Rh2BG599400 Rh2CG569900 Rh2DG609500 Rh4AG395000 Rh4AG395300 Rh4BG408000 Rh4CG423700 Rh4DG402000 Rh4DG402200
rosa_wichuraiana	Rw2G048970 Rw4G034140 Rw4G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	996
Acc65I	GGTACC	1 cut(s)	2175
AccB1I	GGYRCC	1 cut(s)	2175
AccB7I	CCANNNNNTGG	2 cut(s)	1321, 1638
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	1438
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	8 cut(s)	19, 211, 232, 558, 667, 1436, 1438, 1688
AclWI	GGATC	6 cut(s)	695, 861, 908, 1813, 1856, 2111
AcsI	RAATTY	2 cut(s)	361, 605
AcuI	CTGAAG	3 cut(s)	174, 1007, 1995
AdeI	CACNNNGTG	1 cut(s)	1321
AfaI	GTAC	5 cut(s)	5, 241, 794, 1674, 2177
AfiI	CCNNNNNNNGG	5 cut(s)	1321, 1346, 1638, 1667, 1836
AflIII	ACRYGT	1 cut(s)	1076
AgeI	ACCGGT	1 cut(s)	1667
AgsI	TTSAA	9 cut(s)	527, 551, 662, 922, 1200, 1563, 1888, 2023, 2071
AhdI	GACNNNNNGTC	2 cut(s)	1700, 2041
AhlI	ACTAGT	1 cut(s)	1675
AjnI	CCWGG	4 cut(s)	464, 491, 777, 1267
AjuI	GAANNNNNNNTTGG	4 cut(s)	557, 589, 1532, 1564
AluBI	AGCT	8 cut(s)	721, 895, 1413, 1548, 1636, 1774, 1939, 1979
AluI	AGCT	8 cut(s)	721, 895, 1413, 1548, 1636, 1774, 1939, 1979
Alw26I	GTCTC	3 cut(s)	408, 491, 2226
AlwI	GGATC	6 cut(s)	695, 861, 908, 1813, 1856, 2111
Aor13HI	TCCGGA	1 cut(s)	535
AoxI	GGCC	3 cut(s)	55, 391, 1355
ApeKI	GCWGC	4 cut(s)	461, 1380, 1545, 2156
ApoI	RAATTY	2 cut(s)	361, 605
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
AseI	ATTAAT	1 cut(s)	1899
AsiGI	ACCGGT	1 cut(s)	1667
Asp700I	GAANNNNTTC	3 cut(s)	531, 903, 1775
Asp718I	GGTACC	1 cut(s)	2175
AspS9I	GGNCC	3 cut(s)	110, 391, 1641
AsuC2I	CCSGG	1 cut(s)	1129
AsuHPI	GGTGA	6 cut(s)	24, 323, 437, 1160, 1433, 1993
AsuII	TTCGAA	2 cut(s)	750, 2265
AvaII	GGWCC	2 cut(s)	110, 1641
BaeI	ACNNNNGTAYC	2 cut(s)	1992, 2025
BanI	GGYRCC	1 cut(s)	2175
BarI	GAAGNNNNNNTAC	4 cut(s)	379, 411, 1968, 2000
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	4 cut(s)	473, 1392, 1557, 2168
BceAI	ACGGC	1 cut(s)	997
BcgI	CGANNNNNNTGC	4 cut(s)	324, 334, 358, 368
BciT130I	CCWGG	4 cut(s)	466, 493, 779, 1269
BciVI	GTATCC	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	1129
BcoDI	GTCTC	3 cut(s)	408, 491, 2226
BcuI	ACTAGT	1 cut(s)	1675
BfaI	CTAG	5 cut(s)	332, 1118, 1466, 1676, 1836
BfmI	CTRYAG	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	1100
BisI	GCNGC	6 cut(s)	462, 1381, 1439, 1546, 1688, 2157
BlsI	GCNGC	6 cut(s)	463, 1382, 1440, 1547, 1689, 2158
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	5 cut(s)	466, 493, 779, 1129, 1269
Bme18I	GGWCC	2 cut(s)	110, 1641
BmeRI	GACNNNNNGTC	2 cut(s)	1700, 2041
BmgT120I	GGNCC	3 cut(s)	110, 391, 1641
BmiI	GGNNCC	4 cut(s)	392, 562, 1643, 2177
BmrFI	CCNGG	5 cut(s)	466, 493, 779, 1129, 1269
BmrI	ACTGGG	1 cut(s)	2212
BmsI	GCATC	6 cut(s)	198, 1017, 1055, 1563, 1894, 2174
BmuI	ACTGGG	1 cut(s)	2212
BpmI	CTGGAG	1 cut(s)	1290
Bpu10I	CCTNAGC	2 cut(s)	246, 1375
Bpu14I	TTCGAA	2 cut(s)	750, 2265
BpuMI	CCSGG	1 cut(s)	1129
BsaAI	YACGTR	1 cut(s)	1079
BsaI	GGTCTC	1 cut(s)	2226
BsaJI	CCNNGG	7 cut(s)	492, 841, 1210, 1267, 1436, 1801, 2252
BsaWI	WCCGGW	2 cut(s)	535, 1667
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	5 cut(s)	1321, 1346, 1638, 1667, 1836
Bse118I	RCCGGY	2 cut(s)	1303, 1667
Bse1I	ACTGG	6 cut(s)	261, 422, 1189, 1488, 1996, 2207
Bse3DI	GCAATG	2 cut(s)	891, 1166
BseAI	TCCGGA	1 cut(s)	535
BseBI	CCWGG	4 cut(s)	466, 493, 779, 1269
BseDI	CCNNGG	7 cut(s)	492, 841, 1210, 1267, 1436, 1801, 2252
BseGI	GGATG	9 cut(s)	301, 378, 426, 544, 1118, 1303, 1360, 1423, 2274
BseLI	CCNNNNNNNGG	5 cut(s)	1321, 1346, 1638, 1667, 1836
BseMI	GCAATG	2 cut(s)	891, 1166
BseMII	CTCAG	5 cut(s)	41, 237, 528, 1389, 2234
BseNI	ACTGG	6 cut(s)	261, 422, 1189, 1488, 1996, 2207
BseRI	GAGGAG	2 cut(s)	881, 1529
BseXI	GCAGC	4 cut(s)	473, 1392, 1557, 2168
BseYI	CCCAGC	2 cut(s)	1413, 1939
BsgI	GTGCAG	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	1438
BshFI	GGCC	3 cut(s)	57, 393, 1357
BshNI	GGYRCC	1 cut(s)	2175
BshTI	ACCGGT	1 cut(s)	1667
BsiSI	CCGG	4 cut(s)	536, 1128, 1304, 1668
BslFI	GGGAC	2 cut(s)	1144, 1627
BslI	CCNNNNNNNGG	5 cut(s)	1321, 1346, 1638, 1667, 1836
BsmAI	GTCTC	3 cut(s)	408, 491, 2226
BsmFI	GGGAC	2 cut(s)	1144, 1627
BsmI	GAATGC	1 cut(s)	1376
BsnI	GGCC	3 cut(s)	57, 393, 1357
Bso31I	GGTCTC	1 cut(s)	2226
Bsp119I	TTCGAA	2 cut(s)	750, 2265
Bsp13I	TCCGGA	1 cut(s)	535
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	9 cut(s)	700, 853, 913, 1100, 1805, 1861, 2046, 2116, 2280
Bsp19I	CCATGG	1 cut(s)	2252
BspACI	CCGC	8 cut(s)	19, 211, 232, 558, 667, 1436, 1438, 1688
BspANI	GGCC	3 cut(s)	57, 393, 1357
BspCNI	CTCAG	5 cut(s)	40, 238, 527, 1388, 2235
BspEI	TCCGGA	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	1438
BspLI	GGNNCC	4 cut(s)	392, 562, 1643, 2177
BspPI	GGATC	6 cut(s)	695, 861, 908, 1813, 1856, 2111
BspQI	GCTCTTC	1 cut(s)	493
BspT104I	TTCGAA	2 cut(s)	750, 2265
BspT107I	GGYRCC	1 cut(s)	2175
BspTNI	GGTCTC	1 cut(s)	2226
BsrDI	GCAATG	2 cut(s)	891, 1166
BsrFI	RCCGGY	2 cut(s)	1303, 1667
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	6 cut(s)	261, 422, 1189, 1488, 1996, 2207
BssAI	RCCGGY	2 cut(s)	1303, 1667
BssECI	CCNNGG	7 cut(s)	492, 841, 1210, 1267, 1436, 1801, 2252
BssMI	GATC	9 cut(s)	700, 853, 913, 1100, 1805, 1861, 2046, 2116, 2280
BssNAI	GTATAC	1 cut(s)	100
BssT1I	CCWWGG	3 cut(s)	841, 1801, 2252
Bst1107I	GTATAC	1 cut(s)	100
Bst2UI	CCWGG	4 cut(s)	466, 493, 779, 1269
Bst4CI	ACNGT	5 cut(s)	508, 674, 1225, 1477, 2091
Bst6I	CTCTTC	1 cut(s)	493
BstAPI	GCANNNNNTGC	1 cut(s)	1696
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	1079
BstBI	TTCGAA	2 cut(s)	750, 2265
BstC8I	GCNNGC	4 cut(s)	13, 17, 1207, 1305
BstDEI	CTNAG	7 cut(s)	27, 246, 290, 514, 1375, 1848, 2243
BstDSI	CCRYGG	2 cut(s)	1436, 2252
BstEII	GGTNACC	1 cut(s)	1421
BstENI	CCTNNNNNAGG	1 cut(s)	1834
BstF5I	GGATG	9 cut(s)	301, 378, 426, 544, 1118, 1303, 1360, 1423, 2274
BstFNI	CGCG	1 cut(s)	1438
BstKTI	GATC	9 cut(s)	703, 856, 916, 1103, 1808, 1864, 2049, 2119, 2283
BstMAI	GTCTC	3 cut(s)	408, 491, 2226
BstMBI	GATC	9 cut(s)	700, 853, 913, 1100, 1805, 1861, 2046, 2116, 2280
BstMWI	GCNNNNNNNGC	8 cut(s)	458, 608, 675, 932, 1380, 1551, 1696, 2162
BstNI	CCWGG	4 cut(s)	466, 493, 779, 1269
BstNSI	RCATGY	3 cut(s)	15, 742, 973
BstPI	GGTNACC	1 cut(s)	1421
BstSCI	CCNGG	5 cut(s)	464, 491, 777, 1127, 1267
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	1438
BstV1I	GCAGC	4 cut(s)	473, 1392, 1557, 2168
BstX2I	RGATCY	1 cut(s)	1100
BstYI	RGATCY	1 cut(s)	1100
BstZ17I	GTATAC	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	3 cut(s)	57, 393, 1357
BtgI	CCRYGG	2 cut(s)	1436, 2252
BtsCI	GGATG	9 cut(s)	301, 378, 426, 544, 1118, 1303, 1360, 1423, 2274
BtsIMutI	CAGTG	3 cut(s)	268, 935, 1182
Cac8I	GCNNGC	4 cut(s)	13, 17, 1207, 1305
Cfr10I	RCCGGY	2 cut(s)	1303, 1667
Cfr13I	GGNCC	3 cut(s)	110, 391, 1641
Cfr42I	CCGCGG	1 cut(s)	1439
Csp6I	GTAC	5 cut(s)	4, 240, 793, 1673, 2176
CspAI	ACCGGT	1 cut(s)	1667
CviQI	GTAC	5 cut(s)	4, 240, 793, 1673, 2176
DdeI	CTNAG	7 cut(s)	27, 246, 290, 514, 1375, 1848, 2243
DpnI	GATC	9 cut(s)	702, 855, 915, 1102, 1807, 1863, 2048, 2118, 2282
DpnII	GATC	9 cut(s)	700, 853, 913, 1100, 1805, 1861, 2046, 2116, 2280
DraI	TTTAAA	1 cut(s)	952
DraIII	CACNNNGTG	1 cut(s)	1321
DriI	GACNNNNNGTC	2 cut(s)	1700, 2041
Eam1104I	CTCTTC	1 cut(s)	493
Eam1105I	GACNNNNNGTC	2 cut(s)	1700, 2041
EarI	CTCTTC	1 cut(s)	493
EciI	GGCGGA	1 cut(s)	573
Eco130I	CCWWGG	3 cut(s)	841, 1801, 2252
Eco147I	AGGCCT	2 cut(s)	57, 1357
Eco31I	GGTCTC	1 cut(s)	2226
Eco32I	GATATC	3 cut(s)	160, 597, 2140
Eco47I	GGWCC	2 cut(s)	110, 1641
Eco57I	CTGAAG	3 cut(s)	174, 1007, 1995
Eco91I	GGTNACC	1 cut(s)	1421
EcoNI	CCTNNNNNAGG	1 cut(s)	1834
EcoO109I	RGGNCCY	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	1421
EcoRI	GAATTC	1 cut(s)	361
EcoRII	CCWGG	4 cut(s)	464, 491, 777, 1267
EcoRV	GATATC	3 cut(s)	160, 597, 2140
EcoT14I	CCWWGG	3 cut(s)	841, 1801, 2252
ErhI	CCWWGG	3 cut(s)	841, 1801, 2252
FaqI	GGGAC	2 cut(s)	1144, 1627
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	6 cut(s)	462, 1381, 1439, 1546, 1688, 2157
FokI	GGATG	9 cut(s)	308, 385, 433, 551, 1125, 1310, 1347, 1430, 2261
Fsp4HI	GCNGC	6 cut(s)	462, 1381, 1439, 1546, 1688, 2157
FspBI	CTAG	5 cut(s)	332, 1118, 1466, 1676, 1836
GluI	GCNGC	6 cut(s)	462, 1381, 1439, 1546, 1688, 2157
GsaI	CCCAGC	2 cut(s)	1417, 1943
GsuI	CTGGAG	1 cut(s)	1290
HaeIII	GGCC	3 cut(s)	57, 393, 1357
HapII	CCGG	4 cut(s)	536, 1128, 1304, 1668
HincII	GTYRAC	1 cut(s)	818
HindII	GTYRAC	1 cut(s)	818
HindIII	AAGCTT	1 cut(s)	1772
HpaII	CCGG	4 cut(s)	536, 1128, 1304, 1668
HphI	GGTGA	6 cut(s)	24, 323, 437, 1160, 1433, 1993
Hpy166II	GTNNAC	5 cut(s)	100, 818, 837, 1262, 1673
Hpy188I	TCNGA	6 cut(s)	517, 580, 1107, 1781, 2125, 2132
Hpy8I	GTNNAC	5 cut(s)	100, 818, 837, 1262, 1673
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	6 cut(s)	47, 381, 893, 925, 1594, 1840
HpyCH4III	ACNGT	5 cut(s)	508, 674, 1225, 1477, 2091
HpyCH4IV	ACGT	1 cut(s)	1078
HpyF10VI	GCNNNNNNNGC	8 cut(s)	458, 608, 675, 932, 1380, 1551, 1696, 2162
HpyF3I	CTNAG	7 cut(s)	27, 246, 290, 514, 1375, 1848, 2243
HpySE526I	ACGT	1 cut(s)	1078
Kpn2I	TCCGGA	1 cut(s)	535
KpnI	GGTACC	1 cut(s)	2179
KroI	GCCGGC	1 cut(s)	1303
KroNI	GCCGGC	1 cut(s)	1305
KspI	CCGCGG	1 cut(s)	1439
Kzo9I	GATC	9 cut(s)	700, 853, 913, 1100, 1805, 1861, 2046, 2116, 2280
LguI	GCTCTTC	1 cut(s)	493
LmnI	GCTCC	1 cut(s)	786
Lsp1109I	GCAGC	4 cut(s)	473, 1392, 1557, 2168
LweI	GCATC	6 cut(s)	198, 1017, 1055, 1563, 1894, 2174
MaeI	CTAG	5 cut(s)	332, 1118, 1466, 1676, 1836
MaeII	ACGT	1 cut(s)	1078
MaeIII	GTNAC	9 cut(s)	30, 82, 1308, 1421, 1495, 1733, 1913, 2182, 2198
MalI	GATC	9 cut(s)	702, 855, 915, 1102, 1807, 1863, 2048, 2118, 2282
MboI	GATC	9 cut(s)	700, 853, 913, 1100, 1805, 1861, 2046, 2116, 2280
MboII	GAAGA	8 cut(s)	164, 167, 480, 604, 1110, 1171, 2011, 2083
MflI	RGATCY	1 cut(s)	1100
MlyI	GAGTC	5 cut(s)	355, 1526, 1760, 2051, 2110
MmeI	TCCRAC	2 cut(s)	728, 1804
MroI	TCCGGA	1 cut(s)	535
MroNI	GCCGGC	1 cut(s)	1303
MroXI	GAANNNNTTC	3 cut(s)	531, 903, 1775
MseI	TTAA	8 cut(s)	441, 849, 951, 974, 1623, 1824, 1899, 2314
MslI	CAYNNNNRTG	2 cut(s)	1365, 2170
MspA1I	CMGCKG	2 cut(s)	895, 1438
MspI	CCGG	4 cut(s)	536, 1128, 1304, 1668
MspR9I	CCNGG	5 cut(s)	466, 493, 779, 1129, 1269
Mva1269I	GAATGC	1 cut(s)	1376
MvaI	CCWGG	4 cut(s)	466, 493, 779, 1269
MvnI	CGCG	1 cut(s)	1438
MwoI	GCNNNNNNNGC	8 cut(s)	458, 608, 675, 932, 1380, 1551, 1696, 2162
NaeI	GCCGGC	1 cut(s)	1305
NciI	CCSGG	1 cut(s)	1129
NcoI	CCATGG	1 cut(s)	2252
NdeII	GATC	9 cut(s)	700, 853, 913, 1100, 1805, 1861, 2046, 2116, 2280
NgoMIV	GCCGGC	1 cut(s)	1303
NlaIV	GGNNCC	4 cut(s)	392, 562, 1643, 2177
NmeAIII	GCCGAG	1 cut(s)	1235
NmuCI	GTSAC	4 cut(s)	30, 1421, 1733, 1913
NspI	RCATGY	3 cut(s)	15, 742, 973
NspV	TTCGAA	2 cut(s)	750, 2265
PaeI	GCATGC	1 cut(s)	15
PceI	AGGCCT	2 cut(s)	57, 1357
PciSI	GCTCTTC	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PctI	GAATGC	1 cut(s)	1376
PdiI	GCCGGC	1 cut(s)	1305
PdmI	GAANNNNTTC	3 cut(s)	531, 903, 1775
PfeI	GAWTC	7 cut(s)	22, 752, 889, 904, 1429, 1655, 1884
PflMI	CCANNNNNTGG	2 cut(s)	1321, 1638
PinAI	ACCGGT	1 cut(s)	1667
PkrI	GCNGC	6 cut(s)	463, 1382, 1440, 1547, 1689, 2158
PleI	GAGTC	5 cut(s)	354, 1525, 1759, 2050, 2109
PpsI	GAGTC	5 cut(s)	354, 1525, 1759, 2050, 2109
Ppu21I	YACGTR	1 cut(s)	1079
PshBI	ATTAAT	1 cut(s)	1899
PsiI	TTATAA	1 cut(s)	996
Psp6I	CCWGG	4 cut(s)	464, 491, 777, 1267
PspEI	GGTNACC	1 cut(s)	1421
PspFI	CCCAGC	2 cut(s)	1413, 1939
PspGI	CCWGG	4 cut(s)	464, 491, 777, 1267
PspN4I	GGNNCC	4 cut(s)	392, 562, 1643, 2177
PspPI	GGNCC	3 cut(s)	110, 391, 1641
PsuI	RGATCY	1 cut(s)	1100
PvuII	CAGCTG	1 cut(s)	895
RsaI	GTAC	5 cut(s)	5, 241, 794, 1674, 2177
RsaNI	GTAC	5 cut(s)	4, 240, 793, 1673, 2176
RseI	CAYNNNNRTG	2 cut(s)	1365, 2170
SacII	CCGCGG	1 cut(s)	1439
SapI	GCTCTTC	1 cut(s)	493
SaqAI	TTAA	8 cut(s)	441, 849, 951, 974, 1623, 1824, 1899, 2314
SatI	GCNGC	6 cut(s)	462, 1381, 1439, 1546, 1688, 2157
Sau3AI	GATC	9 cut(s)	700, 853, 913, 1100, 1805, 1861, 2046, 2116, 2280
Sau96I	GGNCC	3 cut(s)	110, 391, 1641
ScaI	AGTACT	1 cut(s)	241
SchI	GAGTC	5 cut(s)	355, 1526, 1760, 2051, 2110
ScrFI	CCNGG	5 cut(s)	466, 493, 779, 1129, 1269
SfaNI	GCATC	6 cut(s)	198, 1017, 1055, 1563, 1894, 2174
SfcI	CTRYAG	1 cut(s)	216
Sfr303I	CCGCGG	1 cut(s)	1439
SfuI	TTCGAA	2 cut(s)	750, 2265
SgrBI	CCGCGG	1 cut(s)	1439
SinI	GGWCC	2 cut(s)	110, 1641
SmiMI	CAYNNNNRTG	2 cut(s)	1365, 2170
SpeI	ACTAGT	1 cut(s)	1675
SphI	GCATGC	1 cut(s)	15
SseBI	AGGCCT	2 cut(s)	57, 1357
SsiI	CCGC	8 cut(s)	19, 211, 232, 558, 667, 1436, 1438, 1688
SspI	AATATT	1 cut(s)	569
SspMI	CTAG	5 cut(s)	332, 1118, 1466, 1676, 1836
StuI	AGGCCT	2 cut(s)	57, 1357
StyD4I	CCNGG	5 cut(s)	464, 491, 777, 1127, 1267
StyI	CCWWGG	3 cut(s)	841, 1801, 2252
TaaI	ACNGT	5 cut(s)	508, 674, 1225, 1477, 2091
TaiI	ACGT	1 cut(s)	1081
TaqI	TCGA	7 cut(s)	162, 344, 699, 750, 2045, 2097, 2265
TatI	WGTACW	3 cut(s)	3, 239, 1672
TauI	GCSGC	2 cut(s)	1441, 1690
TfiI	GAWTC	7 cut(s)	22, 752, 889, 904, 1429, 1655, 1884
Tru1I	TTAA	8 cut(s)	441, 849, 951, 974, 1623, 1824, 1899, 2314
Tru9I	TTAA	8 cut(s)	441, 849, 951, 974, 1623, 1824, 1899, 2314
TscAI	CASTG	3 cut(s)	268, 942, 1189
TseFI	GTSAC	4 cut(s)	30, 1421, 1733, 1913
TseI	GCWGC	4 cut(s)	461, 1380, 1545, 2156
Tsp45I	GTSAC	4 cut(s)	30, 1421, 1733, 1913
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	3 cut(s)	268, 942, 1189
Van91I	CCANNNNNTGG	2 cut(s)	1321, 1638
VpaK11BI	GGWCC	2 cut(s)	110, 1641
VspI	ATTAAT	1 cut(s)	1899
XagI	CCTNNNNNAGG	1 cut(s)	1834
XapI	RAATTY	2 cut(s)	361, 605
XbaI	TCTAGA	1 cut(s)	1117
XceI	RCATGY	3 cut(s)	15, 742, 973
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	3 cut(s)	531, 903, 1775
XspI	CTAG	5 cut(s)	332, 1118, 1466, 1676, 1836
ZrmI	AGTACT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.