Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 900 |
| Acc36I | ACCTGC | 1 cut(s) | 681 |
| Acc65I | GGTACC | 1 cut(s) | 693 |
| AccB1I | GGYRCC | 1 cut(s) | 693 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1225 |
| AccI | GTMKAC | 2 cut(s) | 132, 1524 |
| AccII | CGCG | 1 cut(s) | 1185 |
| AciI | CCGC | 7 cut(s) | 173, 534, 576, 970, 1072, 1244, 2034 |
| AclI | AACGTT | 1 cut(s) | 870 |
| AclWI | GGATC | 3 cut(s) | 596, 999, 1398 |
| AcoI | YGGCCR | 1 cut(s) | 1698 |
| AcsI | RAATTY | 1 cut(s) | 564 |
| AcuI | CTGAAG | 1 cut(s) | 1818 |
| AfaI | GTAC | 4 cut(s) | 187, 650, 695, 2100 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 981, 1039, 1225, 1250 |
| AflIII | ACRYGT | 1 cut(s) | 100 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1864 |
| AjnI | CCWGG | 4 cut(s) | 365, 392, 852, 1171 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1403, 1435 |
| AleI | CACNNNNGTG | 1 cut(s) | 1569 |
| Alw21I | GWGCWC | 3 cut(s) | 15, 1467, 1500 |
| Alw26I | GTCTC | 2 cut(s) | 754, 1252 |
| Alw44I | GTGCAC | 1 cut(s) | 11 |
| AlwI | GGATC | 3 cut(s) | 596, 999, 1398 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 318 |
| Ama87I | CYCGRG | 1 cut(s) | 1279 |
| AoxI | GGCC | 2 cut(s) | 60, 1698 |
| ApaLI | GTGCAC | 1 cut(s) | 11 |
| ApeKI | GCWGC | 4 cut(s) | 362, 628, 1642, 1979 |
| ApoI | RAATTY | 1 cut(s) | 564 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 91, 432, 918 |
| Asp718I | GGTACC | 1 cut(s) | 693 |
| AspLEI | GCGC | 2 cut(s) | 628, 829 |
| AspS9I | GGNCC | 3 cut(s) | 53, 972, 1321 |
| AsuC2I | CCSGG | 1 cut(s) | 1033 |
| AsuHPI | GGTGA | 6 cut(s) | 307, 338, 718, 856, 1669, 1677 |
| AvaI | CYCGRG | 1 cut(s) | 1279 |
| AvaII | GGWCC | 3 cut(s) | 53, 972, 1321 |
| BaeGI | GKGCMC | 1 cut(s) | 15 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1815, 1848 |
| BanI | GGYRCC | 1 cut(s) | 693 |
| BanII | GRGCYC | 1 cut(s) | 1500 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1791, 1823 |
| BbsI | GAAGAC | 2 cut(s) | 404, 853 |
| Bbv12I | GWGCWC | 3 cut(s) | 15, 1467, 1500 |
| BbvI | GCAGC | 4 cut(s) | 349, 615, 1654, 1991 |
| BccI | CCATC | 7 cut(s) | 316, 476, 992, 1006, 1219, 1289, 1512 |
| BceAI | ACGGC | 2 cut(s) | 258, 589 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 235, 269, 1480, 1514 |
| BciT130I | CCWGG | 4 cut(s) | 367, 394, 854, 1173 |
| BclI | TGATCA | 1 cut(s) | 723 |
| BcnI | CCSGG | 1 cut(s) | 1033 |
| BcoDI | GTCTC | 2 cut(s) | 754, 1252 |
| BfaI | CTAG | 2 cut(s) | 1022, 1905 |
| BfmI | CTRYAG | 2 cut(s) | 195, 1827 |
| BfoI | RGCGCY | 1 cut(s) | 629 |
| BfuAI | ACCTGC | 1 cut(s) | 681 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 242 |
| BglII | AGATCT | 2 cut(s) | 1080, 1663 |
| BisI | GCNGC | 7 cut(s) | 363, 535, 577, 629, 1643, 1980, 2035 |
| BlsI | GCNGC | 7 cut(s) | 364, 536, 578, 630, 1644, 1981, 2036 |
| Bme1390I | CCNGG | 5 cut(s) | 367, 394, 854, 1033, 1173 |
| Bme18I | GGWCC | 3 cut(s) | 53, 972, 1321 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1864 |
| BmeT110I | CYCGRG | 1 cut(s) | 1279 |
| BmgT120I | GGNCC | 3 cut(s) | 53, 972, 1321 |
| BmiI | GGNNCC | 3 cut(s) | 695, 1322, 1323 |
| BmrFI | CCNGG | 5 cut(s) | 367, 394, 854, 1033, 1173 |
| BmrI | ACTGGG | 2 cut(s) | 1824, 2035 |
| BmsI | GCATC | 7 cut(s) | 290, 898, 921, 1500, 1685, 1830, 1997 |
| BmuI | ACTGGG | 2 cut(s) | 1824, 2035 |
| BpiI | GAAGAC | 2 cut(s) | 404, 853 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2066 |
| BpuEI | CTTGAG | 2 cut(s) | 1211, 1688 |
| BpuMI | CCSGG | 1 cut(s) | 1033 |
| BsaI | GGTCTC | 1 cut(s) | 1252 |
| BsaJI | CCNNGG | 5 cut(s) | 742, 853, 1171, 1172, 2075 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 981, 1039, 1225, 1250 |
| Bse118I | RCCGGY | 1 cut(s) | 1207 |
| Bse1I | ACTGG | 7 cut(s) | 220, 323, 1472, 1543, 1819, 1916, 2030 |
| Bse3DI | GCAATG | 2 cut(s) | 1070, 1211 |
| BseBI | CCWGG | 4 cut(s) | 367, 394, 854, 1173 |
| BseDI | CCNNGG | 5 cut(s) | 742, 853, 1171, 1172, 2075 |
| BseGI | GGATG | 7 cut(s) | 279, 327, 424, 1022, 1183, 1264, 2014 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 981, 1039, 1225, 1250 |
| BseMI | GCAATG | 2 cut(s) | 1070, 1211 |
| BseMII | CTCAG | 2 cut(s) | 495, 1755 |
| BseNI | ACTGG | 7 cut(s) | 220, 323, 1472, 1543, 1819, 1916, 2030 |
| BseRI | GAGGAG | 2 cut(s) | 1329, 2125 |
| BseSI | GKGCMC | 1 cut(s) | 15 |
| BseXI | GCAGC | 4 cut(s) | 349, 615, 1654, 1991 |
| BseYI | CCCAGC | 2 cut(s) | 1369, 1927 |
| BsgI | GTGCAG | 1 cut(s) | 285 |
| Bsh1236I | CGCG | 1 cut(s) | 1185 |
| BshFI | GGCC | 2 cut(s) | 62, 1700 |
| BshNI | GGYRCC | 1 cut(s) | 693 |
| BsiHKAI | GWGCWC | 3 cut(s) | 15, 1467, 1500 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1279 |
| BsiSI | CCGG | 3 cut(s) | 1033, 1075, 1208 |
| BslFI | GGGAC | 1 cut(s) | 1334 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 981, 1039, 1225, 1250 |
| BsmAI | GTCTC | 2 cut(s) | 754, 1252 |
| BsmFI | GGGAC | 1 cut(s) | 1334 |
| BsmI | GAATGC | 3 cut(s) | 262, 941, 1280 |
| BsnI | GGCC | 2 cut(s) | 62, 1700 |
| Bso31I | GGTCTC | 1 cut(s) | 1252 |
| BsoBI | CYCGRG | 1 cut(s) | 1279 |
| Bsp1286I | GDGCHC | 3 cut(s) | 15, 1467, 1500 |
| Bsp1407I | TGTACA | 1 cut(s) | 185 |
| Bsp19I | CCATGG | 1 cut(s) | 2075 |
| BspACI | CCGC | 7 cut(s) | 173, 534, 576, 970, 1072, 1244, 2034 |
| BspANI | GGCC | 2 cut(s) | 62, 1700 |
| BspCNI | CTCAG | 2 cut(s) | 496, 1754 |
| BspFNI | CGCG | 1 cut(s) | 1185 |
| BspHI | TCATGA | 1 cut(s) | 1393 |
| BspLI | GGNNCC | 3 cut(s) | 695, 1322, 1323 |
| BspMAI | CTGCAG | 1 cut(s) | 1831 |
| BspMI | ACCTGC | 1 cut(s) | 681 |
| BspPI | GGATC | 3 cut(s) | 596, 999, 1398 |
| BspQI | GCTCTTC | 1 cut(s) | 394 |
| BspT107I | GGYRCC | 1 cut(s) | 693 |
| BspTNI | GGTCTC | 1 cut(s) | 1252 |
| BsrDI | GCAATG | 2 cut(s) | 1070, 1211 |
| BsrFI | RCCGGY | 1 cut(s) | 1207 |
| BsrGI | TGTACA | 1 cut(s) | 185 |
| BsrI | ACTGG | 7 cut(s) | 220, 323, 1472, 1543, 1819, 1916, 2030 |
| BssAI | RCCGGY | 1 cut(s) | 1207 |
| BssECI | CCNNGG | 5 cut(s) | 742, 853, 1171, 1172, 2075 |
| BssT1I | CCWWGG | 1 cut(s) | 2075 |
| Bst2UI | CCWGG | 4 cut(s) | 367, 394, 854, 1173 |
| Bst4CI | ACNGT | 4 cut(s) | 77, 716, 1049, 1481 |
| Bst6I | CTCTTC | 3 cut(s) | 195, 394, 511 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 947 |
| BstAUI | TGTACA | 1 cut(s) | 185 |
| BstC8I | GCNNGC | 5 cut(s) | 173, 1209, 1500, 1518, 1674 |
| BstDEI | CTNAG | 3 cut(s) | 504, 1741, 2066 |
| BstDSI | CCRYGG | 1 cut(s) | 2075 |
| BstF5I | GGATG | 7 cut(s) | 279, 327, 424, 1022, 1183, 1264, 2014 |
| BstFNI | CGCG | 1 cut(s) | 1185 |
| BstH2I | RGCGCY | 1 cut(s) | 629 |
| BstHHI | GCGC | 2 cut(s) | 628, 829 |
| BstMAI | GTCTC | 2 cut(s) | 754, 1252 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 242, 509, 833, 947, 1098, 1213, 1481, 1886, 1985 |
| BstNI | CCWGG | 4 cut(s) | 367, 394, 854, 1173 |
| BstNSI | RCATGY | 4 cut(s) | 104, 643, 1520, 1979 |
| BstSCI | CCNGG | 5 cut(s) | 365, 392, 852, 1031, 1171 |
| BstSFI | CTRYAG | 2 cut(s) | 195, 1827 |
| BstSLI | GKGCMC | 1 cut(s) | 15 |
| BstUI | CGCG | 1 cut(s) | 1185 |
| BstV1I | GCAGC | 4 cut(s) | 349, 615, 1654, 1991 |
| BstV2I | GAAGAC | 2 cut(s) | 404, 853 |
| BstX2I | RGATCY | 3 cut(s) | 1004, 1080, 1663 |
| BstYI | RGATCY | 3 cut(s) | 1004, 1080, 1663 |
| BsuRI | GGCC | 2 cut(s) | 62, 1700 |
| BtgI | CCRYGG | 1 cut(s) | 2075 |
| BtsCI | GGATG | 7 cut(s) | 279, 327, 424, 1022, 1183, 1264, 2014 |
| BtsI | GCAGTG | 1 cut(s) | 1824 |
| BtsIMutI | CAGTG | 3 cut(s) | 1465, 1486, 1824 |
| BveI | ACCTGC | 1 cut(s) | 681 |
| Cac8I | GCNNGC | 5 cut(s) | 173, 1209, 1500, 1518, 1674 |
| CaiI | CAGNNNCTG | 1 cut(s) | 318 |
| CciI | TCATGA | 1 cut(s) | 1393 |
| CfoI | GCGC | 2 cut(s) | 628, 829 |
| Cfr10I | RCCGGY | 1 cut(s) | 1207 |
| Cfr13I | GGNCC | 3 cut(s) | 53, 972, 1321 |
| CseI | GACGC | 2 cut(s) | 339, 939 |
| Csp6I | GTAC | 4 cut(s) | 186, 649, 694, 2099 |
| CviQI | GTAC | 4 cut(s) | 186, 649, 694, 2099 |
| DdeI | CTNAG | 3 cut(s) | 504, 1741, 2066 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1864 |
| EaeI | YGGCCR | 1 cut(s) | 1698 |
| Eam1104I | CTCTTC | 3 cut(s) | 195, 394, 511 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1864 |
| EarI | CTCTTC | 3 cut(s) | 195, 394, 511 |
| Ecl136II | GAGCTC | 1 cut(s) | 1498 |
| Eco130I | CCWWGG | 1 cut(s) | 2075 |
| Eco24I | GRGCYC | 1 cut(s) | 1500 |
| Eco31I | GGTCTC | 1 cut(s) | 1252 |
| Eco32I | GATATC | 2 cut(s) | 498, 1963 |
| Eco47I | GGWCC | 3 cut(s) | 53, 972, 1321 |
| Eco53kI | GAGCTC | 1 cut(s) | 1498 |
| Eco57I | CTGAAG | 1 cut(s) | 1818 |
| Eco88I | CYCGRG | 1 cut(s) | 1279 |
| EcoICRI | GAGCTC | 1 cut(s) | 1498 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1321 |
| EcoRII | CCWGG | 4 cut(s) | 365, 392, 852, 1171 |
| EcoRV | GATATC | 2 cut(s) | 498, 1963 |
| EcoT14I | CCWWGG | 1 cut(s) | 2075 |
| EcoT22I | ATGCAT | 1 cut(s) | 1493 |
| EcoT38I | GRGCYC | 1 cut(s) | 1500 |
| ErhI | CCWWGG | 1 cut(s) | 2075 |
| FaqI | GGGAC | 1 cut(s) | 1334 |
| FauI | CCCGC | 3 cut(s) | 180, 1079, 1251 |
| FbaI | TGATCA | 1 cut(s) | 723 |
| FblI | GTMKAC | 2 cut(s) | 132, 1524 |
| Fnu4HI | GCNGC | 7 cut(s) | 363, 535, 577, 629, 1643, 1980, 2035 |
| FokI | GGATG | 7 cut(s) | 286, 334, 431, 1029, 1190, 1251, 2001 |
| FriOI | GRGCYC | 1 cut(s) | 1500 |
| Fsp4HI | GCNGC | 7 cut(s) | 363, 535, 577, 629, 1643, 1980, 2035 |
| FspBI | CTAG | 2 cut(s) | 1022, 1905 |
| GlaI | GCGC | 2 cut(s) | 627, 828 |
| GluI | GCNGC | 7 cut(s) | 363, 535, 577, 629, 1643, 1980, 2035 |
| GsaI | CCCAGC | 2 cut(s) | 1373, 1931 |
| HaeII | RGCGCY | 1 cut(s) | 629 |
| HaeIII | GGCC | 2 cut(s) | 62, 1700 |
| HapII | CCGG | 3 cut(s) | 1033, 1075, 1208 |
| HgaI | GACGC | 2 cut(s) | 339, 939 |
| HhaI | GCGC | 2 cut(s) | 628, 829 |
| Hin6I | GCGC | 2 cut(s) | 626, 827 |
| HinP1I | GCGC | 2 cut(s) | 626, 827 |
| HincII | GTYRAC | 3 cut(s) | 133, 251, 1525 |
| HindII | GTYRAC | 3 cut(s) | 133, 251, 1525 |
| HindIII | AAGCTT | 4 cut(s) | 699, 956, 1760, 2068 |
| HinfI | GANTC | 9 cut(s) | 247, 462, 747, 858, 1526, 1622, 1682, 1842, 1865 |
| HpaII | CCGG | 3 cut(s) | 1033, 1075, 1208 |
| HphI | GGTGA | 6 cut(s) | 307, 338, 718, 856, 1669, 1677 |
| Hpy166II | GTNNAC | 8 cut(s) | 13, 133, 251, 738, 1166, 1201, 1411, 1525 |
| Hpy8I | GTNNAC | 8 cut(s) | 13, 133, 251, 738, 1166, 1201, 1411, 1525 |
| Hpy99I | CGWCG | 2 cut(s) | 134, 137 |
| HpyAV | CCTTC | 7 cut(s) | 740, 794, 871, 1465, 1577, 1698, 1723 |
| HpyCH4III | ACNGT | 4 cut(s) | 77, 716, 1049, 1481 |
| HpyCH4IV | ACGT | 2 cut(s) | 870, 1203 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 242, 509, 833, 947, 1098, 1213, 1481, 1886, 1985 |
| HpyF3I | CTNAG | 3 cut(s) | 504, 1741, 2066 |
| HpySE526I | ACGT | 2 cut(s) | 870, 1203 |
| HspAI | GCGC | 2 cut(s) | 626, 827 |
| KflI | GGGWCCC | 1 cut(s) | 1321 |
| KpnI | GGTACC | 1 cut(s) | 697 |
| KroI | GCCGGC | 1 cut(s) | 1207 |
| KroNI | GCCGGC | 1 cut(s) | 1209 |
| Ksp22I | TGATCA | 1 cut(s) | 723 |
| LguI | GCTCTTC | 1 cut(s) | 394 |
| LmnI | GCTCC | 4 cut(s) | 687, 1098, 1818, 2112 |
| Lsp1109I | GCAGC | 4 cut(s) | 349, 615, 1654, 1991 |
| LweI | GCATC | 7 cut(s) | 290, 898, 921, 1500, 1685, 1830, 1997 |
| MaeI | CTAG | 2 cut(s) | 1022, 1905 |
| MaeII | ACGT | 2 cut(s) | 870, 1203 |
| MaeIII | GTNAC | 5 cut(s) | 25, 295, 335, 2005, 2021 |
| MboII | GAAGA | 9 cut(s) | 107, 212, 381, 409, 505, 528, 853, 1014, 1090 |
| MflI | RGATCY | 3 cut(s) | 1004, 1080, 1663 |
| MhlI | GDGCHC | 3 cut(s) | 15, 1467, 1500 |
| MlyI | GAGTC | 7 cut(s) | 256, 471, 756, 867, 1520, 1631, 1874 |
| MmeI | TCCRAC | 3 cut(s) | 96, 681, 1675 |
| Mph1103I | ATGCAT | 1 cut(s) | 1493 |
| MroNI | GCCGGC | 1 cut(s) | 1207 |
| MroXI | GAANNNNTTC | 3 cut(s) | 91, 432, 918 |
| MseI | TTAA | 4 cut(s) | 711, 821, 1383, 1707 |
| MslI | CAYNNNNRTG | 3 cut(s) | 146, 1269, 1569 |
| MspA1I | CMGCKG | 1 cut(s) | 796 |
| MspI | CCGG | 3 cut(s) | 1033, 1075, 1208 |
| MspR9I | CCNGG | 5 cut(s) | 367, 394, 854, 1033, 1173 |
| Mva1269I | GAATGC | 3 cut(s) | 262, 941, 1280 |
| MvaI | CCWGG | 4 cut(s) | 367, 394, 854, 1173 |
| MvnI | CGCG | 1 cut(s) | 1185 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 242, 509, 833, 947, 1098, 1213, 1481, 1886, 1985 |
| NaeI | GCCGGC | 1 cut(s) | 1209 |
| NciI | CCSGG | 1 cut(s) | 1033 |
| NcoI | CCATGG | 1 cut(s) | 2075 |
| NgoMIV | GCCGGC | 1 cut(s) | 1207 |
| NlaIV | GGNNCC | 3 cut(s) | 695, 1322, 1323 |
| NmeAIII | GCCGAG | 1 cut(s) | 1676 |
| NmuCI | GTSAC | 2 cut(s) | 295, 335 |
| NsiI | ATGCAT | 1 cut(s) | 1493 |
| NspI | RCATGY | 4 cut(s) | 104, 643, 1520, 1979 |
| OliI | CACNNNNGTG | 1 cut(s) | 1569 |
| PaeI | GCATGC | 1 cut(s) | 1520 |
| PagI | TCATGA | 1 cut(s) | 1393 |
| PasI | CCCWGGG | 1 cut(s) | 1172 |
| PciI | ACATGT | 1 cut(s) | 100 |
| PciSI | GCTCTTC | 1 cut(s) | 394 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 669, 750 |
| PctI | GAATGC | 3 cut(s) | 262, 941, 1280 |
| PdiI | GCCGGC | 1 cut(s) | 1209 |
| PdmI | GAANNNNTTC | 3 cut(s) | 91, 432, 918 |
| PfeI | GAWTC | 2 cut(s) | 1682, 1842 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1225 |
| PfoI | TCCNGGA | 1 cut(s) | 392 |
| PkrI | GCNGC | 7 cut(s) | 364, 536, 578, 630, 1644, 1981, 2036 |
| PleI | GAGTC | 7 cut(s) | 255, 470, 755, 866, 1520, 1630, 1873 |
| PpsI | GAGTC | 7 cut(s) | 255, 470, 755, 866, 1520, 1630, 1873 |
| PpuMI | RGGWCCY | 1 cut(s) | 1321 |
| PscI | ACATGT | 1 cut(s) | 100 |
| PsiI | TTATAA | 1 cut(s) | 900 |
| Psp124BI | GAGCTC | 1 cut(s) | 1500 |
| Psp1406I | AACGTT | 1 cut(s) | 870 |
| Psp5II | RGGWCCY | 1 cut(s) | 1321 |
| Psp6I | CCWGG | 4 cut(s) | 365, 392, 852, 1171 |
| PspFI | CCCAGC | 2 cut(s) | 1369, 1927 |
| PspGI | CCWGG | 4 cut(s) | 365, 392, 852, 1171 |
| PspN4I | GGNNCC | 3 cut(s) | 695, 1322, 1323 |
| PspPI | GGNCC | 3 cut(s) | 53, 972, 1321 |
| PspPPI | RGGWCCY | 1 cut(s) | 1321 |
| PstI | CTGCAG | 1 cut(s) | 1831 |
| PstNI | CAGNNNCTG | 1 cut(s) | 318 |
| PsuI | RGATCY | 3 cut(s) | 1004, 1080, 1663 |
| PvuII | CAGCTG | 1 cut(s) | 796 |
| RsaI | GTAC | 4 cut(s) | 187, 650, 695, 2100 |
| RsaNI | GTAC | 4 cut(s) | 186, 649, 694, 2099 |
| RseI | CAYNNNNRTG | 3 cut(s) | 146, 1269, 1569 |
| SacI | GAGCTC | 1 cut(s) | 1500 |
| SalI | GTCGAC | 2 cut(s) | 131, 1523 |
| SapI | GCTCTTC | 1 cut(s) | 394 |
| SaqAI | TTAA | 4 cut(s) | 711, 821, 1383, 1707 |
| SatI | GCNGC | 7 cut(s) | 363, 535, 577, 629, 1643, 1980, 2035 |
| Sau96I | GGNCC | 3 cut(s) | 53, 972, 1321 |
| SchI | GAGTC | 7 cut(s) | 256, 471, 756, 867, 1520, 1631, 1874 |
| ScrFI | CCNGG | 5 cut(s) | 367, 394, 854, 1033, 1173 |
| SduI | GDGCHC | 3 cut(s) | 15, 1467, 1500 |
| SfaNI | GCATC | 7 cut(s) | 290, 898, 921, 1500, 1685, 1830, 1997 |
| SfcI | CTRYAG | 2 cut(s) | 195, 1827 |
| SgrDI | CGTCGACG | 1 cut(s) | 131 |
| SinI | GGWCC | 3 cut(s) | 53, 972, 1321 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 146, 1269, 1569 |
| SmlI | CTYRAG | 2 cut(s) | 1190, 1667 |
| SmoI | CTYRAG | 2 cut(s) | 1190, 1667 |
| SphI | GCATGC | 1 cut(s) | 1520 |
| SsiI | CCGC | 7 cut(s) | 173, 534, 576, 970, 1072, 1244, 2034 |
| SspI | AATATT | 1 cut(s) | 470 |
| SspMI | CTAG | 2 cut(s) | 1022, 1905 |
| SstI | GAGCTC | 1 cut(s) | 1500 |
| StyD4I | CCNGG | 5 cut(s) | 365, 392, 852, 1031, 1171 |
| StyI | CCWWGG | 1 cut(s) | 2075 |
| TaaI | ACNGT | 4 cut(s) | 77, 716, 1049, 1481 |
| TaiI | ACGT | 2 cut(s) | 873, 1206 |
| TaqI | TCGA | 8 cut(s) | 132, 426, 444, 568, 672, 1351, 1494, 1524 |
| TatI | WGTACW | 1 cut(s) | 185 |
| TauI | GCSGC | 3 cut(s) | 537, 579, 2037 |
| TfiI | GAWTC | 2 cut(s) | 1682, 1842 |
| Tru1I | TTAA | 4 cut(s) | 711, 821, 1383, 1707 |
| Tru9I | TTAA | 4 cut(s) | 711, 821, 1383, 1707 |
| TscAI | CASTG | 3 cut(s) | 1472, 1486, 1831 |
| TseFI | GTSAC | 2 cut(s) | 295, 335 |
| TseI | GCWGC | 4 cut(s) | 362, 628, 1642, 1979 |
| Tsp45I | GTSAC | 2 cut(s) | 295, 335 |
| TspDTI | ATGAA | 8 cut(s) | 435, 1041, 1287, 1373, 1476, 1593, 1862, 1986 |
| TspGWI | ACGGA | 2 cut(s) | 540, 997 |
| TspRI | CASTG | 3 cut(s) | 1472, 1486, 1831 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1225 |
| VneI | GTGCAC | 1 cut(s) | 11 |
| VpaK11BI | GGWCC | 3 cut(s) | 53, 972, 1321 |
| XapI | RAATTY | 1 cut(s) | 564 |
| XbaI | TCTAGA | 1 cut(s) | 1021 |
| XceI | RCATGY | 4 cut(s) | 104, 643, 1520, 1979 |
| XmiI | GTMKAC | 2 cut(s) | 132, 1524 |
| XmnI | GAANNNNTTC | 3 cut(s) | 91, 432, 918 |
| XspI | CTAG | 2 cut(s) | 1022, 1905 |
| Zsp2I | ATGCAT | 1 cut(s) | 1493 |