Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_RdRP1_2 | PF26250 | 44 - 121 | 7.9e-13 | RdRP1/2, RRM domain |
| PH_RDR2 | PF24823 | 137 - 272 | 1.1e-31 | RDR2 PH-like domain |
| RdRP_helical | PF26252 | 290 - 366 | 1.3e-12 | RNA dependent RNA polymerase, helical domain |
| RdRP | PF05183 | 392 - 961 | 7.3e-198 | RNA dependent RNA polymerase |
| RdRP_head | PF26253 | 985 - 1141 | 1.2e-42 | RdRP, head domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 645, 975, 2091 |
| Acc65I | GGTACC | 1 cut(s) | 3270 |
| AccB1I | GGYRCC | 3 cut(s) | 373, 629, 3270 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 236, 2416 |
| AccI | GTMKAC | 4 cut(s) | 188, 1161, 1191, 2748 |
| AccII | CGCG | 1 cut(s) | 1324 |
| AccIII | TCCGGA | 1 cut(s) | 842 |
| AciI | CCGC | 9 cut(s) | 164, 1111, 1303, 1322, 1324, 1653, 1762, 2387, 2783 |
| AcsI | RAATTY | 6 cut(s) | 173, 847, 919, 1456, 1700, 2175 |
| AcuI | CTGAAG | 4 cut(s) | 842, 1266, 3090, 3441 |
| AcvI | CACGTG | 1 cut(s) | 590 |
| AdeI | CACNNNGTG | 1 cut(s) | 2416 |
| AfaI | GTAC | 6 cut(s) | 329, 1088, 1097, 1638, 1889, 3272 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 236, 773, 881, 2053, 2416, 2441, 2762, 2931 |
| AflII | CTTAAG | 1 cut(s) | 1079 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3136 |
| AhlI | ACTAGT | 1 cut(s) | 103 |
| AjiI | CACGTC | 1 cut(s) | 2395 |
| AjnI | CCWGG | 7 cut(s) | 43, 1023, 1559, 1586, 1872, 2222, 2362 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1652, 1684 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1019, 1051, 2027, 2059 |
| Alw21I | GWGCWC | 3 cut(s) | 507, 549, 763 |
| Alw26I | GTCTC | 5 cut(s) | 159, 1503, 1586, 2511, 3321 |
| Alw44I | GTGCAC | 2 cut(s) | 503, 759 |
| Ama87I | CYCGRG | 3 cut(s) | 351, 947, 2470 |
| Aor13HI | TCCGGA | 1 cut(s) | 842 |
| AoxI | GGCC | 5 cut(s) | 319, 1486, 2450, 2834, 3197 |
| ApaLI | GTGCAC | 2 cut(s) | 503, 759 |
| ApeKI | GCWGC | 6 cut(s) | 577, 711, 1053, 1127, 1556, 3251 |
| ApoI | RAATTY | 6 cut(s) | 173, 847, 919, 1456, 1700, 2175 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1802, 1834 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1626, 1998, 2870 |
| Asp718I | GGTACC | 1 cut(s) | 3270 |
| AspA2I | CCTAGG | 2 cut(s) | 772, 880 |
| AspLEI | GCGC | 2 cut(s) | 242, 1022 |
| AspS9I | GGNCC | 2 cut(s) | 1202, 3197 |
| AsuC2I | CCSGG | 2 cut(s) | 948, 949 |
| AsuHPI | GGTGA | 8 cut(s) | 32, 178, 1418, 1532, 1912, 2255, 2893, 3088 |
| AsuII | TTCGAA | 2 cut(s) | 2982, 3360 |
| AvaI | CYCGRG | 3 cut(s) | 351, 947, 2470 |
| AvaII | GGWCC | 1 cut(s) | 1202 |
| AvrII | CCTAGG | 2 cut(s) | 772, 880 |
| AxyI | CCTNAGG | 1 cut(s) | 751 |
| BaeGI | GKGCMC | 4 cut(s) | 507, 634, 763, 3184 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3087, 3120 |
| BamHI | GGATCC | 1 cut(s) | 985 |
| BanI | GGYRCC | 3 cut(s) | 373, 629, 3270 |
| BanII | GRGCYC | 1 cut(s) | 549 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1059, 1091, 3063, 3095 |
| BbrPI | CACGTG | 1 cut(s) | 590 |
| Bbv12I | GWGCWC | 3 cut(s) | 507, 549, 763 |
| BbvCI | CCTCAGC | 1 cut(s) | 2560 |
| BbvI | GCAGC | 6 cut(s) | 564, 698, 1040, 1139, 1568, 3263 |
| BceAI | ACGGC | 3 cut(s) | 11, 2092, 2400 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1419, 1429, 1453, 1463 |
| BciT130I | CCWGG | 7 cut(s) | 45, 1025, 1561, 1588, 1874, 2224, 2364 |
| BciVI | GTATCC | 1 cut(s) | 1365 |
| BclI | TGATCA | 2 cut(s) | 592, 1917 |
| BcnI | CCSGG | 2 cut(s) | 948, 949 |
| BcoDI | GTCTC | 5 cut(s) | 159, 1503, 1586, 2511, 3321 |
| BcuI | ACTAGT | 1 cut(s) | 103 |
| BfmI | CTRYAG | 3 cut(s) | 276, 1308, 2531 |
| BfrI | CTTAAG | 1 cut(s) | 1079 |
| BfuI | GTATCC | 1 cut(s) | 1365 |
| BglII | AGATCT | 1 cut(s) | 2195 |
| BisI | GCNGC | 7 cut(s) | 578, 712, 1054, 1128, 1557, 2783, 3252 |
| BlnI | CCTAGG | 2 cut(s) | 772, 880 |
| BlsI | GCNGC | 7 cut(s) | 579, 713, 1055, 1129, 1558, 2784, 3253 |
| Bme1390I | CCNGG | 9 cut(s) | 45, 948, 949, 1025, 1561, 1588, 1874, 2224, 2364 |
| Bme18I | GGWCC | 1 cut(s) | 1202 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3136 |
| BmeT110I | CYCGRG | 3 cut(s) | 351, 947, 2470 |
| BmgBI | CACGTC | 1 cut(s) | 2395 |
| BmgT120I | GGNCC | 2 cut(s) | 1202, 3197 |
| BmiI | GGNNCC | 8 cut(s) | 42, 375, 631, 873, 987, 1657, 3198, 3272 |
| BmrFI | CCNGG | 9 cut(s) | 45, 948, 949, 1025, 1561, 1588, 1874, 2224, 2364 |
| BmrI | ACTGGG | 1 cut(s) | 688 |
| BmuI | ACTGGG | 1 cut(s) | 688 |
| BpmI | CTGGAG | 4 cut(s) | 27, 141, 200, 2385 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2560 |
| Bpu14I | TTCGAA | 2 cut(s) | 2982, 3360 |
| BpuEI | CTTGAG | 1 cut(s) | 563 |
| BpuMI | CCSGG | 2 cut(s) | 948, 949 |
| BsaAI | YACGTR | 2 cut(s) | 590, 626 |
| BsaBI | GATNNNNATC | 1 cut(s) | 8 |
| BsaI | GGTCTC | 2 cut(s) | 2511, 3321 |
| BsaWI | WCCGGW | 2 cut(s) | 191, 842 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 824, 854 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 236, 773, 881, 2053, 2416, 2441, 2762, 2931 |
| Bse118I | RCCGGY | 1 cut(s) | 2398 |
| Bse1I | ACTGG | 7 cut(s) | 619, 683, 1517, 2037, 2284, 2767, 3099 |
| Bse21I | CCTNAGG | 1 cut(s) | 751 |
| Bse3DI | GCAATG | 1 cut(s) | 1986 |
| Bse8I | GATNNNNATC | 1 cut(s) | 8 |
| BseAI | TCCGGA | 1 cut(s) | 842 |
| BseBI | CCWGG | 7 cut(s) | 45, 1025, 1561, 1588, 1874, 2224, 2364 |
| BseGI | GGATG | 8 cut(s) | 425, 492, 615, 658, 1473, 1521, 2213, 2455 |
| BseJI | GATNNNNATC | 1 cut(s) | 8 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 236, 773, 881, 2053, 2416, 2441, 2762, 2931 |
| BseMI | GCAATG | 1 cut(s) | 1986 |
| BseMII | CTCAG | 6 cut(s) | 423, 1137, 2562, 2574, 3074, 3329 |
| BseNI | ACTGG | 7 cut(s) | 619, 683, 1517, 2037, 2284, 2767, 3099 |
| BseRI | GAGGAG | 4 cut(s) | 197, 449, 1976, 2624 |
| BseSI | GKGCMC | 4 cut(s) | 507, 634, 763, 3184 |
| BseXI | GCAGC | 6 cut(s) | 564, 698, 1040, 1139, 1568, 3263 |
| BseYI | CCCAGC | 2 cut(s) | 2508, 3034 |
| BsgI | GTGCAG | 2 cut(s) | 1356, 1479 |
| Bsh1236I | CGCG | 1 cut(s) | 1324 |
| BshFI | GGCC | 5 cut(s) | 321, 1488, 2452, 2836, 3199 |
| BshNI | GGYRCC | 3 cut(s) | 373, 629, 3270 |
| BsiHKAI | GWGCWC | 3 cut(s) | 507, 549, 763 |
| BsiHKCI | CYCGRG | 3 cut(s) | 351, 947, 2470 |
| BsiSI | CCGG | 5 cut(s) | 192, 568, 843, 948, 2399 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 236, 773, 881, 2053, 2416, 2441, 2762, 2931 |
| BsmAI | GTCTC | 5 cut(s) | 159, 1503, 1586, 2511, 3321 |
| BsmI | GAATGC | 1 cut(s) | 2471 |
| BsnI | GGCC | 5 cut(s) | 321, 1488, 2452, 2836, 3199 |
| Bso31I | GGTCTC | 2 cut(s) | 2511, 3321 |
| BsoBI | CYCGRG | 3 cut(s) | 351, 947, 2470 |
| Bsp119I | TTCGAA | 2 cut(s) | 2982, 3360 |
| Bsp1286I | GDGCHC | 5 cut(s) | 507, 549, 634, 763, 3184 |
| Bsp13I | TCCGGA | 1 cut(s) | 842 |
| Bsp1407I | TGTACA | 1 cut(s) | 1636 |
| Bsp19I | CCATGG | 1 cut(s) | 3347 |
| BspACI | CCGC | 9 cut(s) | 164, 1111, 1303, 1322, 1324, 1653, 1762, 2387, 2783 |
| BspANI | GGCC | 5 cut(s) | 321, 1488, 2452, 2836, 3199 |
| BspCNI | CTCAG | 6 cut(s) | 424, 1136, 2563, 2573, 3075, 3330 |
| BspEI | TCCGGA | 1 cut(s) | 842 |
| BspFNI | CGCG | 1 cut(s) | 1324 |
| BspHI | TCATGA | 1 cut(s) | 2584 |
| BspLI | GGNNCC | 8 cut(s) | 42, 375, 631, 873, 987, 1657, 3198, 3272 |
| BspMAI | CTGCAG | 2 cut(s) | 280, 2535 |
| BspQI | GCTCTTC | 2 cut(s) | 1588, 3417 |
| BspT104I | TTCGAA | 2 cut(s) | 2982, 3360 |
| BspT107I | GGYRCC | 3 cut(s) | 373, 629, 3270 |
| BspTI | CTTAAG | 1 cut(s) | 1079 |
| BspTNI | GGTCTC | 2 cut(s) | 2511, 3321 |
| BsrDI | GCAATG | 1 cut(s) | 1986 |
| BsrFI | RCCGGY | 1 cut(s) | 2398 |
| BsrGI | TGTACA | 1 cut(s) | 1636 |
| BsrI | ACTGG | 7 cut(s) | 619, 683, 1517, 2037, 2284, 2767, 3099 |
| BssAI | RCCGGY | 1 cut(s) | 2398 |
| BssNAI | GTATAC | 3 cut(s) | 189, 1162, 1192 |
| BssT1I | CCWWGG | 6 cut(s) | 772, 880, 1044, 1936, 2047, 3347 |
| Bst1107I | GTATAC | 3 cut(s) | 189, 1162, 1192 |
| Bst2UI | CCWGG | 7 cut(s) | 45, 1025, 1561, 1588, 1874, 2224, 2364 |
| Bst4CI | ACNGT | 9 cut(s) | 148, 205, 262, 813, 1035, 1603, 2320, 2642, 3186 |
| Bst6I | CTCTTC | 5 cut(s) | 733, 818, 1335, 1588, 3417 |
| BstAFI | CTTAAG | 1 cut(s) | 1079 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 284 |
| BstAUI | TGTACA | 1 cut(s) | 1636 |
| BstBAI | YACGTR | 2 cut(s) | 590, 626 |
| BstBI | TTCGAA | 2 cut(s) | 2982, 3360 |
| BstC8I | GCNNGC | 6 cut(s) | 39, 954, 1105, 1109, 2302, 2400 |
| BstDEI | CTNAG | 8 cut(s) | 432, 751, 1123, 1385, 2560, 2571, 3083, 3338 |
| BstDSI | CCRYGG | 2 cut(s) | 1322, 3347 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2929 |
| BstF5I | GGATG | 8 cut(s) | 425, 492, 615, 658, 1473, 1521, 2213, 2455 |
| BstFNI | CGCG | 1 cut(s) | 1324 |
| BstHHI | GCGC | 2 cut(s) | 242, 1022 |
| BstMAI | GTCTC | 5 cut(s) | 159, 1503, 1586, 2511, 3321 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 284, 1081, 1553, 1703, 1770, 2027, 2791, 3257 |
| BstNI | CCWGG | 7 cut(s) | 45, 1025, 1561, 1588, 1874, 2224, 2364 |
| BstNSI | RCATGY | 3 cut(s) | 1107, 1160, 1837 |
| BstSCI | CCNGG | 9 cut(s) | 43, 946, 947, 1023, 1559, 1586, 1872, 2222, 2362 |
| BstSFI | CTRYAG | 3 cut(s) | 276, 1308, 2531 |
| BstSLI | GKGCMC | 4 cut(s) | 507, 634, 763, 3184 |
| BstUI | CGCG | 1 cut(s) | 1324 |
| BstV1I | GCAGC | 6 cut(s) | 564, 698, 1040, 1139, 1568, 3263 |
| BstX2I | RGATCY | 2 cut(s) | 985, 2195 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 626, 2230 |
| BstYI | RGATCY | 2 cut(s) | 985, 2195 |
| BstZ17I | GTATAC | 3 cut(s) | 189, 1162, 1192 |
| Bsu36I | CCTNAGG | 1 cut(s) | 751 |
| BsuI | GTATCC | 1 cut(s) | 1365 |
| BsuRI | GGCC | 5 cut(s) | 321, 1488, 2452, 2836, 3199 |
| BtgI | CCRYGG | 2 cut(s) | 1322, 3347 |
| BtrI | CACGTC | 1 cut(s) | 2395 |
| BtsCI | GGATG | 8 cut(s) | 425, 492, 615, 658, 1473, 1521, 2213, 2455 |
| BtsI | GCAGTG | 1 cut(s) | 2482 |
| BtsIMutI | CAGTG | 7 cut(s) | 144, 676, 2030, 2277, 2482, 3106, 3461 |
| Cac8I | GCNNGC | 6 cut(s) | 39, 954, 1105, 1109, 2302, 2400 |
| CciI | TCATGA | 1 cut(s) | 2584 |
| CfoI | GCGC | 2 cut(s) | 242, 1022 |
| Cfr10I | RCCGGY | 1 cut(s) | 2398 |
| Cfr13I | GGNCC | 2 cut(s) | 1202, 3197 |
| Cfr42I | CCGCGG | 1 cut(s) | 1325 |
| Cfr9I | CCCGGG | 1 cut(s) | 947 |
| Csp6I | GTAC | 6 cut(s) | 328, 1087, 1096, 1637, 1888, 3271 |
| CviQI | GTAC | 6 cut(s) | 328, 1087, 1096, 1637, 1888, 3271 |
| DdeI | CTNAG | 8 cut(s) | 432, 751, 1123, 1385, 2560, 2571, 3083, 3338 |
| DraIII | CACNNNGTG | 1 cut(s) | 2416 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3136 |
| Eam1104I | CTCTTC | 5 cut(s) | 733, 818, 1335, 1588, 3417 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3136 |
| EarI | CTCTTC | 5 cut(s) | 733, 818, 1335, 1588, 3417 |
| EciI | GGCGGA | 1 cut(s) | 1668 |
| Ecl136II | GAGCTC | 1 cut(s) | 547 |
| Eco130I | CCWWGG | 6 cut(s) | 772, 880, 1044, 1936, 2047, 3347 |
| Eco147I | AGGCCT | 3 cut(s) | 321, 1488, 2452 |
| Eco24I | GRGCYC | 1 cut(s) | 549 |
| Eco31I | GGTCTC | 2 cut(s) | 2511, 3321 |
| Eco32I | GATATC | 5 cut(s) | 429, 1252, 1692, 2890, 3235 |
| Eco47I | GGWCC | 1 cut(s) | 1202 |
| Eco53kI | GAGCTC | 1 cut(s) | 547 |
| Eco57I | CTGAAG | 4 cut(s) | 842, 1266, 3090, 3441 |
| Eco72I | CACGTG | 1 cut(s) | 590 |
| Eco81I | CCTNAGG | 1 cut(s) | 751 |
| Eco88I | CYCGRG | 3 cut(s) | 351, 947, 2470 |
| EcoICRI | GAGCTC | 1 cut(s) | 547 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2929 |
| EcoRI | GAATTC | 1 cut(s) | 1456 |
| EcoRII | CCWGG | 7 cut(s) | 43, 1023, 1559, 1586, 1872, 2222, 2362 |
| EcoRV | GATATC | 5 cut(s) | 429, 1252, 1692, 2890, 3235 |
| EcoT14I | CCWWGG | 6 cut(s) | 772, 880, 1044, 1936, 2047, 3347 |
| EcoT38I | GRGCYC | 1 cut(s) | 549 |
| ErhI | CCWWGG | 6 cut(s) | 772, 880, 1044, 1936, 2047, 3347 |
| FbaI | TGATCA | 2 cut(s) | 592, 1917 |
| FblI | GTMKAC | 4 cut(s) | 188, 1161, 1191, 2748 |
| Fnu4HI | GCNGC | 7 cut(s) | 578, 712, 1054, 1128, 1557, 2783, 3252 |
| FokI | GGATG | 8 cut(s) | 432, 499, 602, 665, 1480, 1528, 2220, 2442 |
| FriOI | GRGCYC | 1 cut(s) | 549 |
| Fsp4HI | GCNGC | 7 cut(s) | 578, 712, 1054, 1128, 1557, 2783, 3252 |
| GlaI | GCGC | 2 cut(s) | 241, 1021 |
| GluI | GCNGC | 7 cut(s) | 578, 712, 1054, 1128, 1557, 2783, 3252 |
| GsaI | CCCAGC | 2 cut(s) | 2512, 3038 |
| GsuI | CTGGAG | 4 cut(s) | 27, 141, 200, 2385 |
| HaeIII | GGCC | 5 cut(s) | 321, 1488, 2452, 2836, 3199 |
| HapII | CCGG | 5 cut(s) | 192, 568, 843, 948, 2399 |
| HhaI | GCGC | 2 cut(s) | 242, 1022 |
| Hin6I | GCGC | 2 cut(s) | 240, 1020 |
| HinP1I | GCGC | 2 cut(s) | 240, 1020 |
| HincII | GTYRAC | 2 cut(s) | 1913, 2749 |
| HindII | GTYRAC | 2 cut(s) | 1913, 2749 |
| HindIII | AAGCTT | 3 cut(s) | 539, 1147, 2867 |
| HpaII | CCGG | 5 cut(s) | 192, 568, 843, 948, 2399 |
| HphI | GGTGA | 8 cut(s) | 32, 178, 1418, 1532, 1912, 2255, 2893, 3088 |
| Hpy99I | CGWCG | 1 cut(s) | 1441 |
| HpyAV | CCTTC | 6 cut(s) | 191, 643, 800, 1478, 1988, 2935 |
| HpyCH4III | ACNGT | 9 cut(s) | 148, 205, 262, 813, 1035, 1603, 2320, 2642, 3186 |
| HpyCH4IV | ACGT | 3 cut(s) | 589, 625, 2394 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 284, 1081, 1553, 1703, 1770, 2027, 2791, 3257 |
| HpyF3I | CTNAG | 8 cut(s) | 432, 751, 1123, 1385, 2560, 2571, 3083, 3338 |
| HpySE526I | ACGT | 3 cut(s) | 589, 625, 2394 |
| HspAI | GCGC | 2 cut(s) | 240, 1020 |
| Kpn2I | TCCGGA | 1 cut(s) | 842 |
| KpnI | GGTACC | 1 cut(s) | 3274 |
| KroI | GCCGGC | 1 cut(s) | 2398 |
| KroNI | GCCGGC | 1 cut(s) | 2400 |
| Ksp22I | TGATCA | 2 cut(s) | 592, 1917 |
| KspI | CCGCGG | 1 cut(s) | 1325 |
| LguI | GCTCTTC | 2 cut(s) | 1588, 3417 |
| LmnI | GCTCC | 6 cut(s) | 46, 552, 742, 877, 1881, 2736 |
| Lsp1109I | GCAGC | 6 cut(s) | 564, 698, 1040, 1139, 1568, 3263 |
| MaeII | ACGT | 3 cut(s) | 589, 625, 2394 |
| MfeI | CAATTG | 2 cut(s) | 88, 480 |
| MflI | RGATCY | 2 cut(s) | 985, 2195 |
| MhlI | GDGCHC | 5 cut(s) | 507, 549, 634, 763, 3184 |
| MlyI | GAGTC | 7 cut(s) | 161, 344, 1450, 2621, 2744, 2855, 3146 |
| MmeI | TCCRAC | 4 cut(s) | 76, 1585, 1823, 2899 |
| MroI | TCCGGA | 1 cut(s) | 842 |
| MroNI | GCCGGC | 1 cut(s) | 2398 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1626, 1998, 2870 |
| MseI | TTAA | 8 cut(s) | 531, 1080, 1536, 1944, 2069, 2919, 3144, 3481 |
| MslI | CAYNNNNRTG | 4 cut(s) | 2460, 2739, 3265, 3456 |
| MspA1I | CMGCKG | 2 cut(s) | 1324, 1990 |
| MspCI | CTTAAG | 1 cut(s) | 1079 |
| MspI | CCGG | 5 cut(s) | 192, 568, 843, 948, 2399 |
| MspR9I | CCNGG | 9 cut(s) | 45, 948, 949, 1025, 1561, 1588, 1874, 2224, 2364 |
| MunI | CAATTG | 2 cut(s) | 88, 480 |
| Mva1269I | GAATGC | 1 cut(s) | 2471 |
| MvaI | CCWGG | 7 cut(s) | 45, 1025, 1561, 1588, 1874, 2224, 2364 |
| MvnI | CGCG | 1 cut(s) | 1324 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 284, 1081, 1553, 1703, 1770, 2027, 2791, 3257 |
| NaeI | GCCGGC | 1 cut(s) | 2400 |
| NciI | CCSGG | 2 cut(s) | 948, 949 |
| NcoI | CCATGG | 1 cut(s) | 3347 |
| NgoMIV | GCCGGC | 1 cut(s) | 2398 |
| NlaIV | GGNNCC | 8 cut(s) | 42, 375, 631, 873, 987, 1657, 3198, 3272 |
| NmuCI | GTSAC | 5 cut(s) | 166, 365, 403, 475, 1529 |
| NspI | RCATGY | 3 cut(s) | 1107, 1160, 1837 |
| NspV | TTCGAA | 2 cut(s) | 2982, 3360 |
| PaeI | GCATGC | 1 cut(s) | 1107 |
| PaeR7I | CTCGAG | 1 cut(s) | 351 |
| PagI | TCATGA | 1 cut(s) | 2584 |
| PceI | AGGCCT | 3 cut(s) | 321, 1488, 2452 |
| PciSI | GCTCTTC | 2 cut(s) | 1588, 3417 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1231 |
| PctI | GAATGC | 1 cut(s) | 2471 |
| PdiI | GCCGGC | 1 cut(s) | 2400 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1626, 1998, 2870 |
| PfeI | GAWTC | 6 cut(s) | 9, 1114, 1984, 1999, 2524, 2979 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 236, 2416 |
| PkrI | GCNGC | 7 cut(s) | 579, 713, 1055, 1129, 1558, 2784, 3253 |
| PleI | GAGTC | 7 cut(s) | 160, 343, 1449, 2620, 2744, 2854, 3145 |
| PmaCI | CACGTG | 1 cut(s) | 590 |
| PmlI | CACGTG | 1 cut(s) | 590 |
| PpsI | GAGTC | 7 cut(s) | 160, 343, 1449, 2620, 2744, 2854, 3145 |
| Ppu21I | YACGTR | 2 cut(s) | 590, 626 |
| PsiI | TTATAA | 3 cut(s) | 645, 975, 2091 |
| Psp124BI | GAGCTC | 1 cut(s) | 549 |
| Psp6I | CCWGG | 7 cut(s) | 43, 1023, 1559, 1586, 1872, 2222, 2362 |
| PspCI | CACGTG | 1 cut(s) | 590 |
| PspFI | CCCAGC | 2 cut(s) | 2508, 3034 |
| PspGI | CCWGG | 7 cut(s) | 43, 1023, 1559, 1586, 1872, 2222, 2362 |
| PspN4I | GGNNCC | 8 cut(s) | 42, 375, 631, 873, 987, 1657, 3198, 3272 |
| PspPI | GGNCC | 2 cut(s) | 1202, 3197 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1152, 1184 |
| PstI | CTGCAG | 2 cut(s) | 280, 2535 |
| PsuI | RGATCY | 2 cut(s) | 985, 2195 |
| PvuII | CAGCTG | 1 cut(s) | 1990 |
| RsaI | GTAC | 6 cut(s) | 329, 1088, 1097, 1638, 1889, 3272 |
| RsaNI | GTAC | 6 cut(s) | 328, 1087, 1096, 1637, 1888, 3271 |
| RseI | CAYNNNNRTG | 4 cut(s) | 2460, 2739, 3265, 3456 |
| SacI | GAGCTC | 1 cut(s) | 549 |
| SacII | CCGCGG | 1 cut(s) | 1325 |
| SalI | GTCGAC | 1 cut(s) | 2747 |
| SapI | GCTCTTC | 2 cut(s) | 1588, 3417 |
| SaqAI | TTAA | 8 cut(s) | 531, 1080, 1536, 1944, 2069, 2919, 3144, 3481 |
| SatI | GCNGC | 7 cut(s) | 578, 712, 1054, 1128, 1557, 2783, 3252 |
| Sau96I | GGNCC | 2 cut(s) | 1202, 3197 |
| SchI | GAGTC | 7 cut(s) | 161, 344, 1450, 2621, 2744, 2855, 3146 |
| ScrFI | CCNGG | 9 cut(s) | 45, 948, 949, 1025, 1561, 1588, 1874, 2224, 2364 |
| SduI | GDGCHC | 5 cut(s) | 507, 549, 634, 763, 3184 |
| SfcI | CTRYAG | 3 cut(s) | 276, 1308, 2531 |
| Sfr274I | CTCGAG | 1 cut(s) | 351 |
| Sfr303I | CCGCGG | 1 cut(s) | 1325 |
| SfuI | TTCGAA | 2 cut(s) | 2982, 3360 |
| SgrBI | CCGCGG | 1 cut(s) | 1325 |
| SinI | GGWCC | 1 cut(s) | 1202 |
| SlaI | CTCGAG | 1 cut(s) | 351 |
| SmaI | CCCGGG | 1 cut(s) | 949 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 2460, 2739, 3265, 3456 |
| SmlI | CTYRAG | 3 cut(s) | 351, 542, 1079 |
| SmoI | CTYRAG | 3 cut(s) | 351, 542, 1079 |
| SpeI | ACTAGT | 1 cut(s) | 103 |
| SphI | GCATGC | 1 cut(s) | 1107 |
| SseBI | AGGCCT | 3 cut(s) | 321, 1488, 2452 |
| SsiI | CCGC | 9 cut(s) | 164, 1111, 1303, 1322, 1324, 1653, 1762, 2387, 2783 |
| SspI | AATATT | 2 cut(s) | 220, 1664 |
| SstI | GAGCTC | 1 cut(s) | 549 |
| StuI | AGGCCT | 3 cut(s) | 321, 1488, 2452 |
| StyD4I | CCNGG | 9 cut(s) | 43, 946, 947, 1023, 1559, 1586, 1872, 2222, 2362 |
| StyI | CCWWGG | 6 cut(s) | 772, 880, 1044, 1936, 2047, 3347 |
| TaaI | ACNGT | 9 cut(s) | 148, 205, 262, 813, 1035, 1603, 2320, 2642, 3186 |
| TaiI | ACGT | 3 cut(s) | 592, 628, 2397 |
| TatI | WGTACW | 3 cut(s) | 1086, 1095, 1636 |
| TauI | GCSGC | 1 cut(s) | 2785 |
| TfiI | GAWTC | 6 cut(s) | 9, 1114, 1984, 1999, 2524, 2979 |
| Tru1I | TTAA | 8 cut(s) | 531, 1080, 1536, 1944, 2069, 2919, 3144, 3481 |
| Tru9I | TTAA | 8 cut(s) | 531, 1080, 1536, 1944, 2069, 2919, 3144, 3481 |
| TscAI | CASTG | 7 cut(s) | 151, 683, 2037, 2284, 2482, 3106, 3461 |
| TseFI | GTSAC | 5 cut(s) | 166, 365, 403, 475, 1529 |
| TseI | GCWGC | 6 cut(s) | 577, 711, 1053, 1127, 1556, 3251 |
| Tsp45I | GTSAC | 5 cut(s) | 166, 365, 403, 475, 1529 |
| TspGWI | ACGGA | 2 cut(s) | 345, 508 |
| TspMI | CCCGGG | 1 cut(s) | 947 |
| TspRI | CASTG | 7 cut(s) | 151, 683, 2037, 2284, 2482, 3106, 3461 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 236, 2416 |
| Vha464I | CTTAAG | 1 cut(s) | 1079 |
| VneI | GTGCAC | 2 cut(s) | 503, 759 |
| VpaK11BI | GGWCC | 1 cut(s) | 1202 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2929 |
| XapI | RAATTY | 6 cut(s) | 173, 847, 919, 1456, 1700, 2175 |
| XbaI | TCTAGA | 1 cut(s) | 2212 |
| XceI | RCATGY | 3 cut(s) | 1107, 1160, 1837 |
| XhoI | CTCGAG | 1 cut(s) | 351 |
| XmaI | CCCGGG | 1 cut(s) | 947 |
| XmaJI | CCTAGG | 2 cut(s) | 772, 880 |
| XmiI | GTMKAC | 4 cut(s) | 188, 1161, 1191, 2748 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1626, 1998, 2870 |