Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_RdRP1_2 | PF26250 | 7 - 84 | 1e-12 | RdRP1/2, RRM domain |
| PH_RDR2 | PF24823 | 100 - 235 | 9.2e-31 | RDR2 PH-like domain |
| RdRP_helical | PF26252 | 253 - 329 | 2.5e-12 | RNA dependent RNA polymerase, helical domain |
| RdRP | PF05183 | 355 - 924 | 1.5e-196 | RNA dependent RNA polymerase |
| RdRP_head | PF26253 | 948 - 1096 | 6.4e-42 | RdRP, head domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 534, 864, 1980 |
| Acc65I | GGTACC | 1 cut(s) | 3159 |
| AccB1I | GGYRCC | 2 cut(s) | 262, 3159 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 125, 2305 |
| AccI | GTMKAC | 4 cut(s) | 77, 1050, 1080, 2637 |
| AccII | CGCG | 1 cut(s) | 1213 |
| AccIII | TCCGGA | 1 cut(s) | 731 |
| AciI | CCGC | 9 cut(s) | 53, 1000, 1192, 1211, 1213, 1542, 1651, 2276, 2672 |
| AcsI | RAATTY | 6 cut(s) | 62, 736, 808, 1345, 1589, 2064 |
| AcuI | CTGAAG | 3 cut(s) | 731, 1155, 2979 |
| AcvI | CACGTG | 1 cut(s) | 479 |
| AdeI | CACNNNGTG | 1 cut(s) | 2305 |
| AfaI | GTAC | 5 cut(s) | 977, 986, 1778, 3118, 3161 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 125, 662, 757, 770, 1942, 2305, 2330, 2651, 2820 |
| AflII | CTTAAG | 2 cut(s) | 640, 968 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3025 |
| AjiI | CACGTC | 1 cut(s) | 2284 |
| AjnI | CCWGG | 7 cut(s) | 835, 912, 1448, 1475, 1761, 2111, 2251 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1541, 1573 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 908, 940, 1916, 1948 |
| Alw21I | GWGCWC | 3 cut(s) | 396, 438, 652 |
| Alw26I | GTCTC | 5 cut(s) | 48, 1392, 1475, 2400, 3210 |
| Alw44I | GTGCAC | 2 cut(s) | 392, 648 |
| Ama87I | CYCGRG | 2 cut(s) | 240, 2359 |
| Aor13HI | TCCGGA | 1 cut(s) | 731 |
| AoxI | GGCC | 6 cut(s) | 208, 520, 1375, 2339, 2723, 3086 |
| ApaLI | GTGCAC | 2 cut(s) | 392, 648 |
| ApeKI | GCWGC | 6 cut(s) | 466, 600, 942, 1016, 1445, 3140 |
| ApoI | RAATTY | 6 cut(s) | 62, 736, 808, 1345, 1589, 2064 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1691, 1723 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1515, 1887, 2759 |
| Asp718I | GGTACC | 1 cut(s) | 3159 |
| AspA2I | CCTAGG | 1 cut(s) | 661 |
| AspLEI | GCGC | 2 cut(s) | 131, 911 |
| AspS9I | GGNCC | 3 cut(s) | 521, 1091, 3086 |
| AsuHPI | GGTGA | 7 cut(s) | 67, 1307, 1421, 1801, 2144, 2782, 2977 |
| AsuII | TTCGAA | 2 cut(s) | 2871, 3249 |
| AvaI | CYCGRG | 2 cut(s) | 240, 2359 |
| AvaII | GGWCC | 1 cut(s) | 1091 |
| AvrII | CCTAGG | 1 cut(s) | 661 |
| BaeGI | GKGCMC | 3 cut(s) | 396, 652, 3073 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2976, 3009 |
| BamHI | GGATCC | 1 cut(s) | 874 |
| BanI | GGYRCC | 2 cut(s) | 262, 3159 |
| BanII | GRGCYC | 1 cut(s) | 438 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 948, 980, 2952, 2984 |
| BbrPI | CACGTG | 1 cut(s) | 479 |
| Bbv12I | GWGCWC | 3 cut(s) | 396, 438, 652 |
| BbvCI | CCTCAGC | 1 cut(s) | 2449 |
| BbvI | GCAGC | 6 cut(s) | 453, 587, 929, 1028, 1457, 3152 |
| BceAI | ACGGC | 1 cut(s) | 1981 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1308, 1318, 1342, 1352 |
| BciT130I | CCWGG | 7 cut(s) | 837, 914, 1450, 1477, 1763, 2113, 2253 |
| BciVI | GTATCC | 1 cut(s) | 1254 |
| BclI | TGATCA | 2 cut(s) | 481, 1806 |
| BcoDI | GTCTC | 5 cut(s) | 48, 1392, 1475, 2400, 3210 |
| BfaI | CTAG | 8 cut(s) | 662, 869, 882, 1245, 1316, 2102, 2786, 2820 |
| BfmI | CTRYAG | 3 cut(s) | 165, 1197, 2420 |
| BfrI | CTTAAG | 2 cut(s) | 640, 968 |
| BfuI | GTATCC | 1 cut(s) | 1254 |
| BglII | AGATCT | 1 cut(s) | 2084 |
| BisI | GCNGC | 7 cut(s) | 467, 601, 943, 1017, 1446, 2672, 3141 |
| BlnI | CCTAGG | 1 cut(s) | 661 |
| BlsI | GCNGC | 7 cut(s) | 468, 602, 944, 1018, 1447, 2673, 3142 |
| Bme1390I | CCNGG | 7 cut(s) | 837, 914, 1450, 1477, 1763, 2113, 2253 |
| Bme18I | GGWCC | 1 cut(s) | 1091 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3025 |
| BmeT110I | CYCGRG | 2 cut(s) | 240, 2359 |
| BmgBI | CACGTC | 1 cut(s) | 2284 |
| BmgT120I | GGNCC | 3 cut(s) | 521, 1091, 3086 |
| BmiI | GGNNCC | 6 cut(s) | 264, 762, 876, 1546, 3087, 3161 |
| BmrFI | CCNGG | 7 cut(s) | 837, 914, 1450, 1477, 1763, 2113, 2253 |
| BmrI | ACTGGG | 2 cut(s) | 577, 3196 |
| BmsI | GCATC | 9 cut(s) | 140, 299, 612, 1179, 2001, 2039, 2547, 2878, 3158 |
| BmuI | ACTGGG | 2 cut(s) | 577, 3196 |
| BpmI | CTGGAG | 3 cut(s) | 30, 89, 2274 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2449 |
| Bpu14I | TTCGAA | 2 cut(s) | 2871, 3249 |
| BpuEI | CTTGAG | 1 cut(s) | 452 |
| BsaAI | YACGTR | 2 cut(s) | 479, 515 |
| BsaI | GGTCTC | 2 cut(s) | 2400, 3210 |
| BsaWI | WCCGGW | 2 cut(s) | 80, 731 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 713, 743 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 125, 662, 757, 770, 1942, 2305, 2330, 2651, 2820 |
| Bse118I | RCCGGY | 1 cut(s) | 2287 |
| Bse1I | ACTGG | 7 cut(s) | 508, 572, 1406, 1926, 2173, 2656, 3191 |
| Bse3DI | GCAATG | 1 cut(s) | 1875 |
| BseAI | TCCGGA | 1 cut(s) | 731 |
| BseBI | CCWGG | 7 cut(s) | 837, 914, 1450, 1477, 1763, 2113, 2253 |
| BseGI | GGATG | 8 cut(s) | 314, 381, 504, 547, 1362, 1410, 2102, 2344 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 125, 662, 757, 770, 1942, 2305, 2330, 2651, 2820 |
| BseMI | GCAATG | 1 cut(s) | 1875 |
| BseMII | CTCAG | 6 cut(s) | 312, 1026, 2451, 2463, 2963, 3218 |
| BseNI | ACTGG | 7 cut(s) | 508, 572, 1406, 1926, 2173, 2656, 3191 |
| BseRI | GAGGAG | 4 cut(s) | 86, 338, 1865, 2513 |
| BseSI | GKGCMC | 3 cut(s) | 396, 652, 3073 |
| BseXI | GCAGC | 6 cut(s) | 453, 587, 929, 1028, 1457, 3152 |
| BseYI | CCCAGC | 2 cut(s) | 2397, 2923 |
| BsgI | GTGCAG | 2 cut(s) | 1245, 1368 |
| Bsh1236I | CGCG | 1 cut(s) | 1213 |
| BshFI | GGCC | 6 cut(s) | 210, 522, 1377, 2341, 2725, 3088 |
| BshNI | GGYRCC | 2 cut(s) | 262, 3159 |
| BsiHKAI | GWGCWC | 3 cut(s) | 396, 438, 652 |
| BsiHKCI | CYCGRG | 2 cut(s) | 240, 2359 |
| BsiSI | CCGG | 4 cut(s) | 81, 457, 732, 2288 |
| BslFI | GGGAC | 1 cut(s) | 734 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 125, 662, 757, 770, 1942, 2305, 2330, 2651, 2820 |
| BsmAI | GTCTC | 5 cut(s) | 48, 1392, 1475, 2400, 3210 |
| BsmFI | GGGAC | 1 cut(s) | 734 |
| BsmI | GAATGC | 1 cut(s) | 2360 |
| BsnI | GGCC | 6 cut(s) | 210, 522, 1377, 2341, 2725, 3088 |
| Bso31I | GGTCTC | 2 cut(s) | 2400, 3210 |
| BsoBI | CYCGRG | 2 cut(s) | 240, 2359 |
| Bsp119I | TTCGAA | 2 cut(s) | 2871, 3249 |
| Bsp1286I | GDGCHC | 4 cut(s) | 396, 438, 652, 3073 |
| Bsp13I | TCCGGA | 1 cut(s) | 731 |
| Bsp19I | CCATGG | 1 cut(s) | 3236 |
| BspACI | CCGC | 9 cut(s) | 53, 1000, 1192, 1211, 1213, 1542, 1651, 2276, 2672 |
| BspANI | GGCC | 6 cut(s) | 210, 522, 1377, 2341, 2725, 3088 |
| BspCNI | CTCAG | 6 cut(s) | 313, 1025, 2452, 2462, 2964, 3219 |
| BspEI | TCCGGA | 1 cut(s) | 731 |
| BspFNI | CGCG | 1 cut(s) | 1213 |
| BspLI | GGNNCC | 6 cut(s) | 264, 762, 876, 1546, 3087, 3161 |
| BspMAI | CTGCAG | 2 cut(s) | 169, 2424 |
| BspQI | GCTCTTC | 1 cut(s) | 1477 |
| BspT104I | TTCGAA | 2 cut(s) | 2871, 3249 |
| BspT107I | GGYRCC | 2 cut(s) | 262, 3159 |
| BspTI | CTTAAG | 2 cut(s) | 640, 968 |
| BspTNI | GGTCTC | 2 cut(s) | 2400, 3210 |
| BsrDI | GCAATG | 1 cut(s) | 1875 |
| BsrFI | RCCGGY | 1 cut(s) | 2287 |
| BsrI | ACTGG | 7 cut(s) | 508, 572, 1406, 1926, 2173, 2656, 3191 |
| BssAI | RCCGGY | 1 cut(s) | 2287 |
| BssNAI | GTATAC | 3 cut(s) | 78, 1051, 1081 |
| BssT1I | CCWWGG | 5 cut(s) | 661, 933, 1825, 1936, 3236 |
| Bst1107I | GTATAC | 3 cut(s) | 78, 1051, 1081 |
| Bst2UI | CCWGG | 7 cut(s) | 837, 914, 1450, 1477, 1763, 2113, 2253 |
| Bst4CI | ACNGT | 9 cut(s) | 37, 94, 151, 702, 924, 1492, 2209, 2531, 3075 |
| Bst6I | CTCTTC | 4 cut(s) | 622, 707, 1224, 1477 |
| BstAFI | CTTAAG | 2 cut(s) | 640, 968 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 173 |
| BstBAI | YACGTR | 2 cut(s) | 479, 515 |
| BstBI | TTCGAA | 2 cut(s) | 2871, 3249 |
| BstC8I | GCNNGC | 5 cut(s) | 843, 994, 998, 2191, 2289 |
| BstDEI | CTNAG | 8 cut(s) | 321, 1012, 1274, 2449, 2460, 2972, 3022, 3227 |
| BstDSI | CCRYGG | 3 cut(s) | 36, 1211, 3236 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2818 |
| BstF5I | GGATG | 8 cut(s) | 314, 381, 504, 547, 1362, 1410, 2102, 2344 |
| BstFNI | CGCG | 1 cut(s) | 1213 |
| BstHHI | GCGC | 2 cut(s) | 131, 911 |
| BstMAI | GTCTC | 5 cut(s) | 48, 1392, 1475, 2400, 3210 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 173, 970, 1442, 1592, 1659, 1916, 2680, 3146 |
| BstNI | CCWGG | 7 cut(s) | 837, 914, 1450, 1477, 1763, 2113, 2253 |
| BstNSI | RCATGY | 3 cut(s) | 996, 1049, 1726 |
| BstSCI | CCNGG | 7 cut(s) | 835, 912, 1448, 1475, 1761, 2111, 2251 |
| BstSFI | CTRYAG | 3 cut(s) | 165, 1197, 2420 |
| BstSLI | GKGCMC | 3 cut(s) | 396, 652, 3073 |
| BstUI | CGCG | 1 cut(s) | 1213 |
| BstV1I | GCAGC | 6 cut(s) | 453, 587, 929, 1028, 1457, 3152 |
| BstX2I | RGATCY | 2 cut(s) | 874, 2084 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 515, 2119 |
| BstYI | RGATCY | 2 cut(s) | 874, 2084 |
| BstZ17I | GTATAC | 3 cut(s) | 78, 1051, 1081 |
| BsuI | GTATCC | 1 cut(s) | 1254 |
| BsuRI | GGCC | 6 cut(s) | 210, 522, 1377, 2341, 2725, 3088 |
| BtgI | CCRYGG | 3 cut(s) | 36, 1211, 3236 |
| BtrI | CACGTC | 1 cut(s) | 2284 |
| BtsCI | GGATG | 8 cut(s) | 314, 381, 504, 547, 1362, 1410, 2102, 2344 |
| BtsI | GCAGTG | 1 cut(s) | 2371 |
| BtsIMutI | CAGTG | 4 cut(s) | 565, 1919, 2166, 2371 |
| Cac8I | GCNNGC | 5 cut(s) | 843, 994, 998, 2191, 2289 |
| CfoI | GCGC | 2 cut(s) | 131, 911 |
| Cfr10I | RCCGGY | 1 cut(s) | 2287 |
| Cfr13I | GGNCC | 3 cut(s) | 521, 1091, 3086 |
| Cfr42I | CCGCGG | 1 cut(s) | 1214 |
| Csp6I | GTAC | 5 cut(s) | 976, 985, 1777, 3117, 3160 |
| CviQI | GTAC | 5 cut(s) | 976, 985, 1777, 3117, 3160 |
| DdeI | CTNAG | 8 cut(s) | 321, 1012, 1274, 2449, 2460, 2972, 3022, 3227 |
| DraIII | CACNNNGTG | 1 cut(s) | 2305 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3025 |
| Eam1104I | CTCTTC | 4 cut(s) | 622, 707, 1224, 1477 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3025 |
| EarI | CTCTTC | 4 cut(s) | 622, 707, 1224, 1477 |
| EciI | GGCGGA | 1 cut(s) | 1557 |
| Ecl136II | GAGCTC | 1 cut(s) | 436 |
| Eco130I | CCWWGG | 5 cut(s) | 661, 933, 1825, 1936, 3236 |
| Eco147I | AGGCCT | 3 cut(s) | 210, 1377, 2341 |
| Eco24I | GRGCYC | 1 cut(s) | 438 |
| Eco31I | GGTCTC | 2 cut(s) | 2400, 3210 |
| Eco32I | GATATC | 5 cut(s) | 318, 1141, 1581, 2779, 3124 |
| Eco47I | GGWCC | 1 cut(s) | 1091 |
| Eco53kI | GAGCTC | 1 cut(s) | 436 |
| Eco57I | CTGAAG | 3 cut(s) | 731, 1155, 2979 |
| Eco72I | CACGTG | 1 cut(s) | 479 |
| Eco88I | CYCGRG | 2 cut(s) | 240, 2359 |
| EcoICRI | GAGCTC | 1 cut(s) | 436 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2818 |
| EcoRI | GAATTC | 1 cut(s) | 1345 |
| EcoRII | CCWGG | 7 cut(s) | 835, 912, 1448, 1475, 1761, 2111, 2251 |
| EcoRV | GATATC | 5 cut(s) | 318, 1141, 1581, 2779, 3124 |
| EcoT14I | CCWWGG | 5 cut(s) | 661, 933, 1825, 1936, 3236 |
| EcoT38I | GRGCYC | 1 cut(s) | 438 |
| ErhI | CCWWGG | 5 cut(s) | 661, 933, 1825, 1936, 3236 |
| FaqI | GGGAC | 1 cut(s) | 734 |
| FbaI | TGATCA | 2 cut(s) | 481, 1806 |
| FblI | GTMKAC | 4 cut(s) | 77, 1050, 1080, 2637 |
| Fnu4HI | GCNGC | 7 cut(s) | 467, 601, 943, 1017, 1446, 2672, 3141 |
| FokI | GGATG | 8 cut(s) | 321, 388, 491, 554, 1369, 1417, 2109, 2331 |
| FriOI | GRGCYC | 1 cut(s) | 438 |
| Fsp4HI | GCNGC | 7 cut(s) | 467, 601, 943, 1017, 1446, 2672, 3141 |
| FspBI | CTAG | 8 cut(s) | 662, 869, 882, 1245, 1316, 2102, 2786, 2820 |
| GlaI | GCGC | 2 cut(s) | 130, 910 |
| GluI | GCNGC | 7 cut(s) | 467, 601, 943, 1017, 1446, 2672, 3141 |
| GsaI | CCCAGC | 2 cut(s) | 2401, 2927 |
| GsuI | CTGGAG | 3 cut(s) | 30, 89, 2274 |
| HaeIII | GGCC | 6 cut(s) | 210, 522, 1377, 2341, 2725, 3088 |
| HapII | CCGG | 4 cut(s) | 81, 457, 732, 2288 |
| HhaI | GCGC | 2 cut(s) | 131, 911 |
| Hin6I | GCGC | 2 cut(s) | 129, 909 |
| HinP1I | GCGC | 2 cut(s) | 129, 909 |
| HincII | GTYRAC | 2 cut(s) | 1802, 2638 |
| HindII | GTYRAC | 2 cut(s) | 1802, 2638 |
| HindIII | AAGCTT | 2 cut(s) | 428, 2756 |
| HpaII | CCGG | 4 cut(s) | 81, 457, 732, 2288 |
| HphI | GGTGA | 7 cut(s) | 67, 1307, 1421, 1801, 2144, 2782, 2977 |
| Hpy99I | CGWCG | 1 cut(s) | 1330 |
| HpyAV | CCTTC | 9 cut(s) | 80, 532, 689, 1028, 1367, 1877, 2324, 2578, 2824 |
| HpyCH4III | ACNGT | 9 cut(s) | 37, 94, 151, 702, 924, 1492, 2209, 2531, 3075 |
| HpyCH4IV | ACGT | 3 cut(s) | 478, 514, 2283 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 173, 970, 1442, 1592, 1659, 1916, 2680, 3146 |
| HpyF3I | CTNAG | 8 cut(s) | 321, 1012, 1274, 2449, 2460, 2972, 3022, 3227 |
| HpySE526I | ACGT | 3 cut(s) | 478, 514, 2283 |
| HspAI | GCGC | 2 cut(s) | 129, 909 |
| Kpn2I | TCCGGA | 1 cut(s) | 731 |
| KpnI | GGTACC | 1 cut(s) | 3163 |
| KroI | GCCGGC | 1 cut(s) | 2287 |
| KroNI | GCCGGC | 1 cut(s) | 2289 |
| Ksp22I | TGATCA | 2 cut(s) | 481, 1806 |
| KspI | CCGCGG | 1 cut(s) | 1214 |
| LguI | GCTCTTC | 1 cut(s) | 1477 |
| LmnI | GCTCC | 5 cut(s) | 441, 631, 766, 1770, 2625 |
| Lsp1109I | GCAGC | 6 cut(s) | 453, 587, 929, 1028, 1457, 3152 |
| LweI | GCATC | 9 cut(s) | 140, 299, 612, 1179, 2001, 2039, 2547, 2878, 3158 |
| MaeI | CTAG | 8 cut(s) | 662, 869, 882, 1245, 1316, 2102, 2786, 2820 |
| MaeII | ACGT | 3 cut(s) | 478, 514, 2283 |
| MflI | RGATCY | 2 cut(s) | 874, 2084 |
| MhlI | GDGCHC | 4 cut(s) | 396, 438, 652, 3073 |
| MlyI | GAGTC | 7 cut(s) | 50, 233, 1339, 2510, 2633, 2744, 3035 |
| MmeI | TCCRAC | 3 cut(s) | 1474, 1712, 2788 |
| MroI | TCCGGA | 1 cut(s) | 731 |
| MroNI | GCCGGC | 1 cut(s) | 2287 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1515, 1887, 2759 |
| MseI | TTAA | 9 cut(s) | 420, 641, 969, 1425, 1833, 1958, 2808, 3033, 3298 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2349, 2628, 3154 |
| MspA1I | CMGCKG | 2 cut(s) | 1213, 1879 |
| MspCI | CTTAAG | 2 cut(s) | 640, 968 |
| MspI | CCGG | 4 cut(s) | 81, 457, 732, 2288 |
| MspR9I | CCNGG | 7 cut(s) | 837, 914, 1450, 1477, 1763, 2113, 2253 |
| Mva1269I | GAATGC | 1 cut(s) | 2360 |
| MvaI | CCWGG | 7 cut(s) | 837, 914, 1450, 1477, 1763, 2113, 2253 |
| MvnI | CGCG | 1 cut(s) | 1213 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 173, 970, 1442, 1592, 1659, 1916, 2680, 3146 |
| NaeI | GCCGGC | 1 cut(s) | 2289 |
| NcoI | CCATGG | 1 cut(s) | 3236 |
| NgoMIV | GCCGGC | 1 cut(s) | 2287 |
| NlaIV | GGNNCC | 6 cut(s) | 264, 762, 876, 1546, 3087, 3161 |
| NmuCI | GTSAC | 5 cut(s) | 55, 254, 292, 364, 1418 |
| NspI | RCATGY | 3 cut(s) | 996, 1049, 1726 |
| NspV | TTCGAA | 2 cut(s) | 2871, 3249 |
| PaeI | GCATGC | 1 cut(s) | 996 |
| PaeR7I | CTCGAG | 1 cut(s) | 240 |
| PceI | AGGCCT | 3 cut(s) | 210, 1377, 2341 |
| PciSI | GCTCTTC | 1 cut(s) | 1477 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1120 |
| PctI | GAATGC | 1 cut(s) | 2360 |
| PdiI | GCCGGC | 1 cut(s) | 2289 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1515, 1887, 2759 |
| PfeI | GAWTC | 5 cut(s) | 1003, 1873, 1888, 2413, 2868 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 125, 2305 |
| PkrI | GCNGC | 7 cut(s) | 468, 602, 944, 1018, 1447, 2673, 3142 |
| PleI | GAGTC | 7 cut(s) | 49, 232, 1338, 2509, 2633, 2743, 3034 |
| PmaCI | CACGTG | 1 cut(s) | 479 |
| PmlI | CACGTG | 1 cut(s) | 479 |
| PpsI | GAGTC | 7 cut(s) | 49, 232, 1338, 2509, 2633, 2743, 3034 |
| Ppu21I | YACGTR | 2 cut(s) | 479, 515 |
| PsiI | TTATAA | 3 cut(s) | 534, 864, 1980 |
| Psp124BI | GAGCTC | 1 cut(s) | 438 |
| Psp6I | CCWGG | 7 cut(s) | 835, 912, 1448, 1475, 1761, 2111, 2251 |
| PspCI | CACGTG | 1 cut(s) | 479 |
| PspFI | CCCAGC | 2 cut(s) | 2397, 2923 |
| PspGI | CCWGG | 7 cut(s) | 835, 912, 1448, 1475, 1761, 2111, 2251 |
| PspN4I | GGNNCC | 6 cut(s) | 264, 762, 876, 1546, 3087, 3161 |
| PspPI | GGNCC | 3 cut(s) | 521, 1091, 3086 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1041, 1073 |
| PstI | CTGCAG | 2 cut(s) | 169, 2424 |
| PsuI | RGATCY | 2 cut(s) | 874, 2084 |
| PvuII | CAGCTG | 1 cut(s) | 1879 |
| RsaI | GTAC | 5 cut(s) | 977, 986, 1778, 3118, 3161 |
| RsaNI | GTAC | 5 cut(s) | 976, 985, 1777, 3117, 3160 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2349, 2628, 3154 |
| SacI | GAGCTC | 1 cut(s) | 438 |
| SacII | CCGCGG | 1 cut(s) | 1214 |
| SalI | GTCGAC | 1 cut(s) | 2636 |
| SapI | GCTCTTC | 1 cut(s) | 1477 |
| SaqAI | TTAA | 9 cut(s) | 420, 641, 969, 1425, 1833, 1958, 2808, 3033, 3298 |
| SatI | GCNGC | 7 cut(s) | 467, 601, 943, 1017, 1446, 2672, 3141 |
| Sau96I | GGNCC | 3 cut(s) | 521, 1091, 3086 |
| SchI | GAGTC | 7 cut(s) | 50, 233, 1339, 2510, 2633, 2744, 3035 |
| ScrFI | CCNGG | 7 cut(s) | 837, 914, 1450, 1477, 1763, 2113, 2253 |
| SduI | GDGCHC | 4 cut(s) | 396, 438, 652, 3073 |
| SfaNI | GCATC | 9 cut(s) | 140, 299, 612, 1179, 2001, 2039, 2547, 2878, 3158 |
| SfcI | CTRYAG | 3 cut(s) | 165, 1197, 2420 |
| Sfr274I | CTCGAG | 1 cut(s) | 240 |
| Sfr303I | CCGCGG | 1 cut(s) | 1214 |
| SfuI | TTCGAA | 2 cut(s) | 2871, 3249 |
| SgrBI | CCGCGG | 1 cut(s) | 1214 |
| SinI | GGWCC | 1 cut(s) | 1091 |
| SlaI | CTCGAG | 1 cut(s) | 240 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2349, 2628, 3154 |
| SmlI | CTYRAG | 4 cut(s) | 240, 431, 640, 968 |
| SmoI | CTYRAG | 4 cut(s) | 240, 431, 640, 968 |
| SphI | GCATGC | 1 cut(s) | 996 |
| SseBI | AGGCCT | 3 cut(s) | 210, 1377, 2341 |
| SsiI | CCGC | 9 cut(s) | 53, 1000, 1192, 1211, 1213, 1542, 1651, 2276, 2672 |
| SspI | AATATT | 1 cut(s) | 1553 |
| SspMI | CTAG | 8 cut(s) | 662, 869, 882, 1245, 1316, 2102, 2786, 2820 |
| SstI | GAGCTC | 1 cut(s) | 438 |
| StuI | AGGCCT | 3 cut(s) | 210, 1377, 2341 |
| StyD4I | CCNGG | 7 cut(s) | 835, 912, 1448, 1475, 1761, 2111, 2251 |
| StyI | CCWWGG | 5 cut(s) | 661, 933, 1825, 1936, 3236 |
| TaaI | ACNGT | 9 cut(s) | 37, 94, 151, 702, 924, 1492, 2209, 2531, 3075 |
| TaiI | ACGT | 3 cut(s) | 481, 517, 2286 |
| TatI | WGTACW | 2 cut(s) | 975, 984 |
| TauI | GCSGC | 1 cut(s) | 2674 |
| TfiI | GAWTC | 5 cut(s) | 1003, 1873, 1888, 2413, 2868 |
| Tru1I | TTAA | 9 cut(s) | 420, 641, 969, 1425, 1833, 1958, 2808, 3033, 3298 |
| Tru9I | TTAA | 9 cut(s) | 420, 641, 969, 1425, 1833, 1958, 2808, 3033, 3298 |
| TscAI | CASTG | 4 cut(s) | 572, 1926, 2173, 2371 |
| TseFI | GTSAC | 5 cut(s) | 55, 254, 292, 364, 1418 |
| TseI | GCWGC | 6 cut(s) | 466, 600, 942, 1016, 1445, 3140 |
| Tsp45I | GTSAC | 5 cut(s) | 55, 254, 292, 364, 1418 |
| TspGWI | ACGGA | 2 cut(s) | 397, 1581 |
| TspRI | CASTG | 4 cut(s) | 572, 1926, 2173, 2371 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 125, 2305 |
| Vha464I | CTTAAG | 2 cut(s) | 640, 968 |
| VneI | GTGCAC | 2 cut(s) | 392, 648 |
| VpaK11BI | GGWCC | 1 cut(s) | 1091 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2818 |
| XapI | RAATTY | 6 cut(s) | 62, 736, 808, 1345, 1589, 2064 |
| XbaI | TCTAGA | 1 cut(s) | 2101 |
| XceI | RCATGY | 3 cut(s) | 996, 1049, 1726 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 515 |
| XhoI | CTCGAG | 1 cut(s) | 240 |
| XmaJI | CCTAGG | 1 cut(s) | 661 |
| XmiI | GTMKAC | 4 cut(s) | 77, 1050, 1080, 2637 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1515, 1887, 2759 |
| XspI | CTAG | 8 cut(s) | 662, 869, 882, 1245, 1316, 2102, 2786, 2820 |