Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_RdRP1_2 | PF26250 | 5 - 82 | 5.3e-12 | RdRP1/2, RRM domain |
| PH_RDR2 | PF24823 | 98 - 229 | 6.5e-31 | RDR2 PH-like domain |
| RdRP_helical | PF26252 | 246 - 324 | 1.8e-11 | RNA dependent RNA polymerase, helical domain |
| RdRP | PF05183 | 349 - 922 | 5e-199 | RNA dependent RNA polymerase |
| RdRP_head | PF26253 | 948 - 1091 | 1.4e-40 | RdRP, head domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 405, 846 |
| Acc16I | TGCGCA | 3 cut(s) | 1202, 1378, 2026 |
| Acc65I | GGTACC | 1 cut(s) | 512 |
| AccB1I | GGYRCC | 1 cut(s) | 512 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 128, 2299, 2645 |
| AccI | GTMKAC | 4 cut(s) | 417, 2631, 2674, 2862 |
| AccII | CGCG | 2 cut(s) | 982, 1335 |
| AccIII | TCCGGA | 2 cut(s) | 1075, 2692 |
| AciI | CCGC | 7 cut(s) | 982, 1611, 2047, 2318, 2336, 3123, 3341 |
| AclI | AACGTT | 1 cut(s) | 2114 |
| AclWI | GGATC | 9 cut(s) | 851, 926, 1673, 1839, 2472, 2540, 2791, 2840, 3210 |
| AcoI | YGGCCR | 1 cut(s) | 589 |
| AcsI | RAATTY | 4 cut(s) | 374, 1641, 3277, 3320 |
| AcuI | CTGAAG | 3 cut(s) | 696, 771, 2979 |
| AcvI | CACGTG | 1 cut(s) | 3333 |
| AcyI | GRCGYC | 1 cut(s) | 3306 |
| AdeI | CACNNNGTG | 1 cut(s) | 2299 |
| AfaI | GTAC | 7 cut(s) | 221, 514, 959, 1727, 1772, 3146, 3271 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 128, 752, 2299, 2324, 2645 |
| AflIII | ACRYGT | 3 cut(s) | 811, 2523, 2737 |
| AjiI | CACGTC | 4 cut(s) | 106, 812, 2278, 2738 |
| AjnI | CCWGG | 6 cut(s) | 306, 817, 894, 1452, 1469, 3071 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2510, 2542 |
| AleI | CACNNNNGTG | 3 cut(s) | 810, 2270, 2990 |
| Alw21I | GWGCWC | 5 cut(s) | 462, 980, 1035, 1374, 2593 |
| Alw26I | GTCTC | 6 cut(s) | 103, 215, 436, 1469, 2326, 2355 |
| Alw44I | GTGCAC | 3 cut(s) | 976, 1031, 2589 |
| AlwI | GGATC | 9 cut(s) | 851, 926, 1673, 1839, 2472, 2540, 2791, 2840, 3210 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 176 |
| Ama87I | CYCGRG | 2 cut(s) | 425, 2245 |
| Aor13HI | TCCGGA | 2 cut(s) | 1075, 2692 |
| AoxI | GGCC | 3 cut(s) | 589, 1450, 2580 |
| ApaLI | GTGCAC | 3 cut(s) | 976, 1031, 2589 |
| ApeKI | GCWGC | 5 cut(s) | 292, 582, 924, 2169, 3180 |
| ApoI | RAATTY | 4 cut(s) | 374, 1641, 3277, 3320 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1283, 1315 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1509, 1995, 3002 |
| Asp718I | GGTACC | 1 cut(s) | 512 |
| AspLEI | GCGC | 3 cut(s) | 1203, 1379, 2027 |
| AspS9I | GGNCC | 3 cut(s) | 1073, 1450, 3069 |
| AsuC2I | CCSGG | 3 cut(s) | 1829, 2246, 2247 |
| AsuHPI | GGTGA | 5 cut(s) | 39, 1301, 2776, 2809, 2977 |
| AsuII | TTCGAA | 1 cut(s) | 2871 |
| AvaI | CYCGRG | 2 cut(s) | 425, 2245 |
| AvaII | GGWCC | 2 cut(s) | 1073, 3069 |
| BaeGI | GKGCMC | 4 cut(s) | 895, 980, 1035, 2593 |
| BalI | TGGCCA | 1 cut(s) | 591 |
| BanI | GGYRCC | 1 cut(s) | 512 |
| BanII | GRGCYC | 2 cut(s) | 462, 1374 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2952, 2984 |
| BbrPI | CACGTG | 1 cut(s) | 3333 |
| Bbv12I | GWGCWC | 5 cut(s) | 462, 980, 1035, 1374, 2593 |
| BbvCI | CCTCAGC | 1 cut(s) | 3212 |
| BbvI | GCAGC | 5 cut(s) | 279, 569, 911, 2181, 3167 |
| BceAI | ACGGC | 3 cut(s) | 751, 2136, 2962 |
| BcgI | CGANNNNNNTGC | 5 cut(s) | 2129, 2163, 3091, 3125, 3315 |
| BciT130I | CCWGG | 6 cut(s) | 308, 819, 896, 1454, 1471, 3073 |
| BciVI | GTATCC | 1 cut(s) | 3130 |
| BclI | TGATCA | 1 cut(s) | 475 |
| BcnI | CCSGG | 3 cut(s) | 1829, 2246, 2247 |
| BcoDI | GTCTC | 6 cut(s) | 103, 215, 436, 1469, 2326, 2355 |
| BfaI | CTAG | 7 cut(s) | 243, 851, 861, 1443, 1874, 2226, 3066 |
| BfmI | CTRYAG | 1 cut(s) | 1218 |
| BfuI | GTATCC | 1 cut(s) | 3130 |
| BglII | AGATCT | 2 cut(s) | 724, 2401 |
| BisI | GCNGC | 5 cut(s) | 293, 583, 925, 2170, 3181 |
| BlsI | GCNGC | 5 cut(s) | 294, 584, 926, 2171, 3182 |
| Bme1390I | CCNGG | 9 cut(s) | 308, 819, 896, 1454, 1471, 1829, 2246, 2247, 3073 |
| Bme18I | GGWCC | 2 cut(s) | 1073, 3069 |
| BmeT110I | CYCGRG | 2 cut(s) | 425, 2245 |
| BmgBI | CACGTC | 4 cut(s) | 106, 812, 2278, 2738 |
| BmgT120I | GGNCC | 3 cut(s) | 1073, 1450, 3069 |
| BmiI | GGNNCC | 2 cut(s) | 514, 628 |
| BmrFI | CCNGG | 9 cut(s) | 308, 819, 896, 1454, 1471, 1829, 2246, 2247, 3073 |
| BmrI | ACTGGG | 2 cut(s) | 559, 2933 |
| BmsI | GCATC | 8 cut(s) | 293, 1204, 1425, 1975, 2036, 2347, 2878, 2958 |
| BmuI | ACTGGG | 2 cut(s) | 559, 2933 |
| BpmI | CTGGAG | 2 cut(s) | 92, 105 |
| Bpu10I | CCTNAGC | 3 cut(s) | 482, 2353, 3212 |
| Bpu14I | TTCGAA | 1 cut(s) | 2871 |
| BpuEI | CTTGAG | 1 cut(s) | 1101 |
| BpuMI | CCSGG | 3 cut(s) | 1829, 2246, 2247 |
| Bsa29I | ATCGAT | 1 cut(s) | 2883 |
| BsaAI | YACGTR | 4 cut(s) | 647, 2678, 2724, 3333 |
| BsaHI | GRCGYC | 1 cut(s) | 3306 |
| BsaI | GGTCTC | 2 cut(s) | 436, 2326 |
| BsaWI | WCCGGW | 4 cut(s) | 49, 346, 1075, 2692 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1703, 1733 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 128, 752, 2299, 2324, 2645 |
| Bse118I | RCCGGY | 1 cut(s) | 2281 |
| Bse1I | ACTGG | 8 cut(s) | 88, 502, 554, 2113, 2170, 2650, 2928, 2988 |
| Bse3DI | GCAATG | 2 cut(s) | 2147, 2285 |
| BseAI | TCCGGA | 2 cut(s) | 1075, 2692 |
| BseBI | CCWGG | 6 cut(s) | 308, 819, 896, 1454, 1471, 3073 |
| BseCI | ATCGAT | 1 cut(s) | 2883 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 128, 752, 2299, 2324, 2645 |
| BseMI | GCAATG | 2 cut(s) | 2147, 2285 |
| BseMII | CTCAG | 6 cut(s) | 1569, 1572, 1697, 2367, 2412, 3226 |
| BseNI | ACTGG | 8 cut(s) | 88, 502, 554, 2113, 2170, 2650, 2928, 2988 |
| BseRI | GAGGAG | 2 cut(s) | 332, 2373 |
| BseSI | GKGCMC | 4 cut(s) | 895, 980, 1035, 2593 |
| BseXI | GCAGC | 5 cut(s) | 279, 569, 911, 2181, 3167 |
| BseYI | CCCAGC | 2 cut(s) | 2443, 3171 |
| Bsh1236I | CGCG | 2 cut(s) | 982, 1335 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2429 |
| BshFI | GGCC | 3 cut(s) | 591, 1452, 2582 |
| BshNI | GGYRCC | 1 cut(s) | 512 |
| BshVI | ATCGAT | 1 cut(s) | 2883 |
| BsiEI | CGRYCG | 1 cut(s) | 2429 |
| BsiHKAI | GWGCWC | 5 cut(s) | 462, 980, 1035, 1374, 2593 |
| BsiHKCI | CYCGRG | 2 cut(s) | 425, 2245 |
| BsiSI | CCGG | 8 cut(s) | 50, 347, 1076, 1829, 1982, 2246, 2282, 2693 |
| BslFI | GGGAC | 7 cut(s) | 102, 239, 294, 382, 1418, 1811, 2408 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 128, 752, 2299, 2324, 2645 |
| BsmAI | GTCTC | 6 cut(s) | 103, 215, 436, 1469, 2326, 2355 |
| BsmBI | CGTCTC | 1 cut(s) | 215 |
| BsmFI | GGGAC | 7 cut(s) | 102, 239, 294, 382, 1418, 1811, 2408 |
| BsmI | GAATGC | 2 cut(s) | 2018, 2354 |
| BsnI | GGCC | 3 cut(s) | 591, 1452, 2582 |
| Bso31I | GGTCTC | 2 cut(s) | 436, 2326 |
| BsoBI | CYCGRG | 2 cut(s) | 425, 2245 |
| Bsp119I | TTCGAA | 1 cut(s) | 2871 |
| Bsp1286I | GDGCHC | 6 cut(s) | 462, 895, 980, 1035, 1374, 2593 |
| Bsp13I | TCCGGA | 2 cut(s) | 1075, 2692 |
| BspACI | CCGC | 7 cut(s) | 982, 1611, 2047, 2318, 2336, 3123, 3341 |
| BspANI | GGCC | 3 cut(s) | 591, 1452, 2582 |
| BspCNI | CTCAG | 6 cut(s) | 1568, 1573, 1698, 2366, 2411, 3225 |
| BspDI | ATCGAT | 1 cut(s) | 2883 |
| BspEI | TCCGGA | 2 cut(s) | 1075, 2692 |
| BspFNI | CGCG | 2 cut(s) | 982, 1335 |
| BspHI | TCATGA | 1 cut(s) | 2467 |
| BspLI | GGNNCC | 2 cut(s) | 514, 628 |
| BspMAI | CTGCAG | 1 cut(s) | 1222 |
| BspPI | GGATC | 9 cut(s) | 851, 926, 1673, 1839, 2472, 2540, 2791, 2840, 3210 |
| BspQI | GCTCTTC | 1 cut(s) | 1471 |
| BspT104I | TTCGAA | 1 cut(s) | 2871 |
| BspT107I | GGYRCC | 1 cut(s) | 512 |
| BspTNI | GGTCTC | 2 cut(s) | 436, 2326 |
| BsrDI | GCAATG | 2 cut(s) | 2147, 2285 |
| BsrFI | RCCGGY | 1 cut(s) | 2281 |
| BsrI | ACTGG | 8 cut(s) | 88, 502, 554, 2113, 2170, 2650, 2928, 2988 |
| BssAI | RCCGGY | 1 cut(s) | 2281 |
| BssNAI | GTATAC | 1 cut(s) | 418 |
| BssNI | GRCGYC | 1 cut(s) | 3306 |
| BssT1I | CCWWGG | 2 cut(s) | 795, 1819 |
| Bst1107I | GTATAC | 1 cut(s) | 418 |
| Bst2UI | CCWGG | 6 cut(s) | 308, 819, 896, 1454, 1471, 3073 |
| Bst4CI | ACNGT | 4 cut(s) | 97, 1097, 2479, 2821 |
| Bst6I | CTCTTC | 3 cut(s) | 1218, 1471, 2184 |
| BstACI | GRCGYC | 1 cut(s) | 3306 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 176 |
| BstBAI | YACGTR | 4 cut(s) | 647, 2678, 2724, 3333 |
| BstBI | TTCGAA | 1 cut(s) | 2871 |
| BstC8I | GCNNGC | 6 cut(s) | 825, 980, 1337, 1370, 2283, 2607 |
| BstDEI | CTNAG | 9 cut(s) | 482, 1268, 1555, 1581, 1706, 2353, 2365, 2398, 3212 |
| BstDSI | CCRYGG | 3 cut(s) | 435, 2820, 3221 |
| BstFNI | CGCG | 2 cut(s) | 982, 1335 |
| BstHHI | GCGC | 3 cut(s) | 1203, 1379, 2027 |
| BstMAI | GTCTC | 6 cut(s) | 103, 215, 436, 1469, 2326, 2355 |
| BstMCI | CGRYCG | 1 cut(s) | 2429 |
| BstNI | CCWGG | 6 cut(s) | 308, 819, 896, 1454, 1471, 3073 |
| BstNSI | RCATGY | 4 cut(s) | 170, 1720, 2527, 2552 |
| BstSCI | CCNGG | 9 cut(s) | 306, 817, 894, 1452, 1469, 1827, 2244, 2245, 3071 |
| BstSFI | CTRYAG | 1 cut(s) | 1218 |
| BstSLI | GKGCMC | 4 cut(s) | 895, 980, 1035, 2593 |
| BstSNI | TACGTA | 1 cut(s) | 2724 |
| BstUI | CGCG | 2 cut(s) | 982, 1335 |
| BstV1I | GCAGC | 5 cut(s) | 279, 569, 911, 2181, 3167 |
| BstX2I | RGATCY | 3 cut(s) | 724, 1678, 2401 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 509, 2038 |
| BstYI | RGATCY | 3 cut(s) | 724, 1678, 2401 |
| BstZ17I | GTATAC | 1 cut(s) | 418 |
| Bsu15I | ATCGAT | 1 cut(s) | 2883 |
| BsuI | GTATCC | 1 cut(s) | 3130 |
| BsuRI | GGCC | 3 cut(s) | 591, 1452, 2582 |
| BsuTUI | ATCGAT | 1 cut(s) | 2883 |
| BtgI | CCRYGG | 3 cut(s) | 435, 2820, 3221 |
| BtrI | CACGTC | 4 cut(s) | 106, 812, 2278, 2738 |
| BtsI | GCAGTG | 2 cut(s) | 63, 3048 |
| BtsIMutI | CAGTG | 8 cut(s) | 63, 81, 1350, 1703, 2163, 2484, 2995, 3048 |
| Cac8I | GCNNGC | 6 cut(s) | 825, 980, 1337, 1370, 2283, 2607 |
| CaiI | CAGNNNCTG | 1 cut(s) | 176 |
| CciI | TCATGA | 1 cut(s) | 2467 |
| CfoI | GCGC | 3 cut(s) | 1203, 1379, 2027 |
| Cfr10I | RCCGGY | 1 cut(s) | 2281 |
| Cfr13I | GGNCC | 3 cut(s) | 1073, 1450, 3069 |
| Cfr9I | CCCGGG | 1 cut(s) | 2245 |
| ClaI | ATCGAT | 1 cut(s) | 2883 |
| CseI | GACGC | 5 cut(s) | 690, 1347, 2017, 3123, 3295 |
| CsiI | ACCWGGT | 1 cut(s) | 3071 |
| Csp6I | GTAC | 7 cut(s) | 220, 513, 958, 1726, 1771, 3145, 3270 |
| CviQI | GTAC | 7 cut(s) | 220, 513, 958, 1726, 1771, 3145, 3270 |
| DdeI | CTNAG | 9 cut(s) | 482, 1268, 1555, 1581, 1706, 2353, 2365, 2398, 3212 |
| DraIII | CACNNNGTG | 1 cut(s) | 2299 |
| EaeI | YGGCCR | 1 cut(s) | 589 |
| Eam1104I | CTCTTC | 3 cut(s) | 1218, 1471, 2184 |
| EarI | CTCTTC | 3 cut(s) | 1218, 1471, 2184 |
| Ecl136II | GAGCTC | 2 cut(s) | 460, 1372 |
| Eco105I | TACGTA | 1 cut(s) | 2724 |
| Eco130I | CCWWGG | 2 cut(s) | 795, 1819 |
| Eco24I | GRGCYC | 2 cut(s) | 462, 1374 |
| Eco31I | GGTCTC | 2 cut(s) | 436, 2326 |
| Eco32I | GATATC | 1 cut(s) | 1575 |
| Eco47I | GGWCC | 2 cut(s) | 1073, 3069 |
| Eco53kI | GAGCTC | 2 cut(s) | 460, 1372 |
| Eco57I | CTGAAG | 3 cut(s) | 696, 771, 2979 |
| Eco72I | CACGTG | 1 cut(s) | 3333 |
| Eco88I | CYCGRG | 2 cut(s) | 425, 2245 |
| EcoICRI | GAGCTC | 2 cut(s) | 460, 1372 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3069 |
| EcoRI | GAATTC | 1 cut(s) | 3277 |
| EcoRII | CCWGG | 6 cut(s) | 306, 817, 894, 1452, 1469, 3071 |
| EcoRV | GATATC | 1 cut(s) | 1575 |
| EcoT14I | CCWWGG | 2 cut(s) | 795, 1819 |
| EcoT38I | GRGCYC | 2 cut(s) | 462, 1374 |
| ErhI | CCWWGG | 2 cut(s) | 795, 1819 |
| Esp3I | CGTCTC | 1 cut(s) | 215 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1198, 1230, 1846, 1878 |
| FaqI | GGGAC | 7 cut(s) | 102, 239, 294, 382, 1418, 1811, 2408 |
| FauI | CCCGC | 2 cut(s) | 1604, 2325 |
| FauNDI | CATATG | 2 cut(s) | 622, 3288 |
| FbaI | TGATCA | 1 cut(s) | 475 |
| FblI | GTMKAC | 4 cut(s) | 417, 2631, 2674, 2862 |
| Fnu4HI | GCNGC | 5 cut(s) | 293, 583, 925, 2170, 3181 |
| FriOI | GRGCYC | 2 cut(s) | 462, 1374 |
| Fsp4HI | GCNGC | 5 cut(s) | 293, 583, 925, 2170, 3181 |
| FspBI | CTAG | 7 cut(s) | 243, 851, 861, 1443, 1874, 2226, 3066 |
| FspI | TGCGCA | 3 cut(s) | 1202, 1378, 2026 |
| GlaI | GCGC | 3 cut(s) | 1202, 1378, 2026 |
| GluI | GCNGC | 5 cut(s) | 293, 583, 925, 2170, 3181 |
| GsaI | CCCAGC | 2 cut(s) | 2447, 3175 |
| GsuI | CTGGAG | 2 cut(s) | 92, 105 |
| HaeIII | GGCC | 3 cut(s) | 591, 1452, 2582 |
| HapII | CCGG | 8 cut(s) | 50, 347, 1076, 1829, 1982, 2246, 2282, 2693 |
| HgaI | GACGC | 5 cut(s) | 690, 1347, 2017, 3123, 3295 |
| HhaI | GCGC | 3 cut(s) | 1203, 1379, 2027 |
| Hin1I | GRCGYC | 1 cut(s) | 3306 |
| Hin6I | GCGC | 3 cut(s) | 1201, 1377, 2025 |
| HinP1I | GCGC | 3 cut(s) | 1201, 1377, 2025 |
| HincII | GTYRAC | 4 cut(s) | 361, 565, 1796, 2632 |
| HindII | GTYRAC | 4 cut(s) | 361, 565, 1796, 2632 |
| HindIII | AAGCTT | 3 cut(s) | 2750, 2874, 2929 |
| HpaII | CCGG | 8 cut(s) | 50, 347, 1076, 1829, 1982, 2246, 2282, 2693 |
| HphI | GGTGA | 5 cut(s) | 39, 1301, 2776, 2809, 2977 |
| Hpy99I | CGWCG | 2 cut(s) | 580, 3113 |
| HpyCH4III | ACNGT | 4 cut(s) | 97, 1097, 2479, 2821 |
| HpyF3I | CTNAG | 9 cut(s) | 482, 1268, 1555, 1581, 1706, 2353, 2365, 2398, 3212 |
| Hsp92I | GRCGYC | 1 cut(s) | 3306 |
| HspAI | GCGC | 3 cut(s) | 1201, 1377, 2025 |
| Kpn2I | TCCGGA | 2 cut(s) | 1075, 2692 |
| KpnI | GGTACC | 1 cut(s) | 516 |
| KroI | GCCGGC | 1 cut(s) | 2281 |
| KroNI | GCCGGC | 1 cut(s) | 2283 |
| Ksp22I | TGATCA | 1 cut(s) | 475 |
| LguI | GCTCTTC | 1 cut(s) | 1471 |
| LmnI | GCTCC | 5 cut(s) | 319, 457, 465, 1764, 2619 |
| Lsp1109I | GCAGC | 5 cut(s) | 279, 569, 911, 2181, 3167 |
| LweI | GCATC | 8 cut(s) | 293, 1204, 1425, 1975, 2036, 2347, 2878, 2958 |
| MabI | ACCWGGT | 1 cut(s) | 3071 |
| MaeI | CTAG | 7 cut(s) | 243, 851, 861, 1443, 1874, 2226, 3066 |
| MboII | GAAGA | 9 cut(s) | 485, 588, 650, 1193, 1235, 1458, 1582, 2091, 2201 |
| MflI | RGATCY | 3 cut(s) | 724, 1678, 2401 |
| MhlI | GDGCHC | 6 cut(s) | 462, 895, 980, 1035, 1374, 2593 |
| MlsI | TGGCCA | 1 cut(s) | 591 |
| MluNI | TGGCCA | 1 cut(s) | 591 |
| MlyI | GAGTC | 7 cut(s) | 221, 1548, 1833, 2390, 2504, 2627, 2738 |
| MmeI | TCCRAC | 5 cut(s) | 1116, 1706, 1758, 2097, 2782 |
| Mox20I | TGGCCA | 1 cut(s) | 591 |
| MroI | TCCGGA | 2 cut(s) | 1075, 2692 |
| MroNI | GCCGGC | 1 cut(s) | 2281 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1509, 1995, 3002 |
| MscI | TGGCCA | 1 cut(s) | 591 |
| MseI | TTAA | 9 cut(s) | 6, 378, 528, 759, 1482, 1521, 1886, 2808, 3054 |
| MslI | CAYNNNNRTG | 5 cut(s) | 810, 2270, 2343, 2622, 2990 |
| Msp20I | TGGCCA | 1 cut(s) | 591 |
| MspA1I | CMGCKG | 2 cut(s) | 2270, 3343 |
| MspI | CCGG | 8 cut(s) | 50, 347, 1076, 1829, 1982, 2246, 2282, 2693 |
| MspR9I | CCNGG | 9 cut(s) | 308, 819, 896, 1454, 1471, 1829, 2246, 2247, 3073 |
| Mva1269I | GAATGC | 2 cut(s) | 2018, 2354 |
| MvaI | CCWGG | 6 cut(s) | 308, 819, 896, 1454, 1471, 3073 |
| MvnI | CGCG | 2 cut(s) | 982, 1335 |
| NaeI | GCCGGC | 1 cut(s) | 2283 |
| NciI | CCSGG | 3 cut(s) | 1829, 2246, 2247 |
| NdeI | CATATG | 2 cut(s) | 622, 3288 |
| NgoMIV | GCCGGC | 1 cut(s) | 2281 |
| NlaIV | GGNNCC | 2 cut(s) | 514, 628 |
| NmeAIII | GCCGAG | 1 cut(s) | 2608 |
| NmuCI | GTSAC | 5 cut(s) | 835, 1045, 1289, 1939, 3048 |
| NsbI | TGCGCA | 3 cut(s) | 1202, 1378, 2026 |
| NspI | RCATGY | 4 cut(s) | 170, 1720, 2527, 2552 |
| NspV | TTCGAA | 1 cut(s) | 2871 |
| OliI | CACNNNNGTG | 3 cut(s) | 810, 2270, 2990 |
| PaeR7I | CTCGAG | 1 cut(s) | 425 |
| PagI | TCATGA | 1 cut(s) | 2467 |
| PciI | ACATGT | 1 cut(s) | 2523 |
| PciSI | GCTCTTC | 1 cut(s) | 1471 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2422, 2674 |
| PctI | GAATGC | 2 cut(s) | 2018, 2354 |
| PdiI | GCCGGC | 1 cut(s) | 2283 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1509, 1995, 3002 |
| PfeI | GAWTC | 7 cut(s) | 44, 173, 985, 1867, 2868, 3085, 3095 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 128, 2299, 2645 |
| PfoI | TCCNGGA | 1 cut(s) | 1827 |
| PkrI | GCNGC | 5 cut(s) | 294, 584, 926, 2171, 3182 |
| PleI | GAGTC | 7 cut(s) | 221, 1547, 1832, 2390, 2503, 2627, 2737 |
| PmaCI | CACGTG | 1 cut(s) | 3333 |
| PmlI | CACGTG | 1 cut(s) | 3333 |
| PpsI | GAGTC | 7 cut(s) | 221, 1547, 1832, 2390, 2503, 2627, 2737 |
| Ppu21I | YACGTR | 4 cut(s) | 647, 2678, 2724, 3333 |
| PpuMI | RGGWCCY | 1 cut(s) | 3069 |
| PscI | ACATGT | 1 cut(s) | 2523 |
| PsiI | TTATAA | 2 cut(s) | 405, 846 |
| Psp124BI | GAGCTC | 2 cut(s) | 462, 1374 |
| Psp1406I | AACGTT | 1 cut(s) | 2114 |
| Psp5II | RGGWCCY | 1 cut(s) | 3069 |
| Psp6I | CCWGG | 6 cut(s) | 306, 817, 894, 1452, 1469, 3071 |
| PspCI | CACGTG | 1 cut(s) | 3333 |
| PspFI | CCCAGC | 2 cut(s) | 2443, 3171 |
| PspGI | CCWGG | 6 cut(s) | 306, 817, 894, 1452, 1469, 3071 |
| PspN4I | GGNNCC | 2 cut(s) | 514, 628 |
| PspPI | GGNCC | 3 cut(s) | 1073, 1450, 3069 |
| PspPPI | RGGWCCY | 1 cut(s) | 3069 |
| PspXI | VCTCGAGB | 1 cut(s) | 425 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1159, 1191 |
| PstI | CTGCAG | 1 cut(s) | 1222 |
| PstNI | CAGNNNCTG | 1 cut(s) | 176 |
| PsuI | RGATCY | 3 cut(s) | 724, 1678, 2401 |
| PvuII | CAGCTG | 1 cut(s) | 2270 |
| RsaI | GTAC | 7 cut(s) | 221, 514, 959, 1727, 1772, 3146, 3271 |
| RsaNI | GTAC | 7 cut(s) | 220, 513, 958, 1726, 1771, 3145, 3270 |
| RseI | CAYNNNNRTG | 5 cut(s) | 810, 2270, 2343, 2622, 2990 |
| SacI | GAGCTC | 2 cut(s) | 462, 1374 |
| SalI | GTCGAC | 1 cut(s) | 2630 |
| SapI | GCTCTTC | 1 cut(s) | 1471 |
| SaqAI | TTAA | 9 cut(s) | 6, 378, 528, 759, 1482, 1521, 1886, 2808, 3054 |
| SatI | GCNGC | 5 cut(s) | 293, 583, 925, 2170, 3181 |
| Sau96I | GGNCC | 3 cut(s) | 1073, 1450, 3069 |
| SchI | GAGTC | 7 cut(s) | 221, 1548, 1833, 2390, 2504, 2627, 2738 |
| ScrFI | CCNGG | 9 cut(s) | 308, 819, 896, 1454, 1471, 1829, 2246, 2247, 3073 |
| SduI | GDGCHC | 6 cut(s) | 462, 895, 980, 1035, 1374, 2593 |
| SexAI | ACCWGGT | 1 cut(s) | 3071 |
| SfaNI | GCATC | 8 cut(s) | 293, 1204, 1425, 1975, 2036, 2347, 2878, 2958 |
| SfcI | CTRYAG | 1 cut(s) | 1218 |
| Sfr274I | CTCGAG | 1 cut(s) | 425 |
| SfuI | TTCGAA | 1 cut(s) | 2871 |
| SinI | GGWCC | 2 cut(s) | 1073, 3069 |
| SlaI | CTCGAG | 1 cut(s) | 425 |
| SmaI | CCCGGG | 1 cut(s) | 2247 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 810, 2270, 2343, 2622, 2990 |
| SmlI | CTYRAG | 2 cut(s) | 425, 1116 |
| SmoI | CTYRAG | 2 cut(s) | 425, 1116 |
| SnaBI | TACGTA | 1 cut(s) | 2724 |
| SsiI | CCGC | 7 cut(s) | 982, 1611, 2047, 2318, 2336, 3123, 3341 |
| SspI | AATATT | 1 cut(s) | 1547 |
| SspMI | CTAG | 7 cut(s) | 243, 851, 861, 1443, 1874, 2226, 3066 |
| SstI | GAGCTC | 2 cut(s) | 462, 1374 |
| StyD4I | CCNGG | 9 cut(s) | 306, 817, 894, 1452, 1469, 1827, 2244, 2245, 3071 |
| StyI | CCWWGG | 2 cut(s) | 795, 1819 |
| TaaI | ACNGT | 4 cut(s) | 97, 1097, 2479, 2821 |
| TaqII | GACCGA | 1 cut(s) | 2443 |
| TatI | WGTACW | 1 cut(s) | 957 |
| TfiI | GAWTC | 7 cut(s) | 44, 173, 985, 1867, 2868, 3085, 3095 |
| Tru1I | TTAA | 9 cut(s) | 6, 378, 528, 759, 1482, 1521, 1886, 2808, 3054 |
| Tru9I | TTAA | 9 cut(s) | 6, 378, 528, 759, 1482, 1521, 1886, 2808, 3054 |
| TscAI | CASTG | 8 cut(s) | 63, 88, 1350, 1710, 2170, 2484, 2995, 3048 |
| TseFI | GTSAC | 5 cut(s) | 835, 1045, 1289, 1939, 3048 |
| TseI | GCWGC | 5 cut(s) | 292, 582, 924, 2169, 3180 |
| Tsp45I | GTSAC | 5 cut(s) | 835, 1045, 1289, 1939, 3048 |
| TspDTI | ATGAA | 9 cut(s) | 1263, 1308, 1512, 2118, 2361, 2447, 2689, 3047, 3275 |
| TspGWI | ACGGA | 6 cut(s) | 452, 564, 619, 822, 2880, 3210 |
| TspMI | CCCGGG | 1 cut(s) | 2245 |
| TspRI | CASTG | 8 cut(s) | 63, 88, 1350, 1710, 2170, 2484, 2995, 3048 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 128, 2299, 2645 |
| VneI | GTGCAC | 3 cut(s) | 976, 1031, 2589 |
| VpaK11BI | GGWCC | 2 cut(s) | 1073, 3069 |
| XapI | RAATTY | 4 cut(s) | 374, 1641, 3277, 3320 |
| XceI | RCATGY | 4 cut(s) | 170, 1720, 2527, 2552 |
| XhoI | CTCGAG | 1 cut(s) | 425 |
| XmaI | CCCGGG | 1 cut(s) | 2245 |
| XmiI | GTMKAC | 4 cut(s) | 417, 2631, 2674, 2862 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1509, 1995, 3002 |
| XspI | CTAG | 7 cut(s) | 243, 851, 861, 1443, 1874, 2226, 3066 |