Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 681, 1140 |
| Acc36I | ACCTGC | 1 cut(s) | 2229 |
| Acc65I | GGTACC | 2 cut(s) | 2241, 3639 |
| AccB1I | GGYRCC | 4 cut(s) | 262, 986, 2241, 3639 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1226, 2779 |
| AccBSI | CCGCTC | 1 cut(s) | 1173 |
| AccI | GTMKAC | 1 cut(s) | 3154 |
| AccII | CGCG | 1 cut(s) | 489 |
| AciI | CCGC | 6 cut(s) | 489, 1173, 2082, 2103, 2518, 2763 |
| AclWI | GGATC | 6 cut(s) | 1325, 1338, 2144, 2547, 2952, 3020 |
| AcoI | YGGCCR | 1 cut(s) | 949 |
| AcuI | CTGAAG | 3 cut(s) | 1179, 1611, 3465 |
| AcvI | CACGTG | 1 cut(s) | 947 |
| AdeI | CACNNNGTG | 1 cut(s) | 2779 |
| AfeI | AGCGCT | 1 cut(s) | 2656 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 125, 1214, 1226, 2407, 2529, 2779, 2804, 3125, 3340 |
| AflII | CTTAAG | 1 cut(s) | 392 |
| AflIII | ACRYGT | 2 cut(s) | 3217, 3250 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3511 |
| AjnI | CCWGG | 4 cut(s) | 1291, 1368, 1913, 3557 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2990, 3022 |
| Alw21I | GWGCWC | 5 cut(s) | 288, 532, 1509, 3073, 3096 |
| Alw26I | GTCTC | 2 cut(s) | 48, 1940 |
| Alw44I | GTGCAC | 1 cut(s) | 1505 |
| AlwI | GGATC | 6 cut(s) | 1325, 1338, 2144, 2547, 2952, 3020 |
| Aor51HI | AGCGCT | 1 cut(s) | 2656 |
| AoxI | GGCC | 2 cut(s) | 949, 2813 |
| ApaLI | GTGCAC | 1 cut(s) | 1505 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 918, 1980, 2466, 3760 |
| Asp718I | GGTACC | 2 cut(s) | 2241, 3639 |
| AspLEI | GCGC | 2 cut(s) | 2375, 2657 |
| AspS9I | GGNCC | 6 cut(s) | 695, 1217, 1547, 2520, 2875, 3555 |
| AsuC2I | CCSGG | 2 cut(s) | 2581, 2727 |
| AvaII | GGWCC | 6 cut(s) | 695, 1217, 1547, 2520, 2875, 3555 |
| BaeGI | GKGCMC | 5 cut(s) | 267, 991, 1369, 1509, 2763 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3462, 3495 |
| BalI | TGGCCA | 1 cut(s) | 951 |
| BamHI | GGATCC | 1 cut(s) | 1330 |
| BanI | GGYRCC | 4 cut(s) | 262, 986, 2241, 3639 |
| BanII | GRGCYC | 1 cut(s) | 3096 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3438, 3470 |
| BbrPI | CACGTG | 1 cut(s) | 947 |
| BbsI | GAAGAC | 4 cut(s) | 2623, 2676, 2785, 3366 |
| Bbv12I | GWGCWC | 5 cut(s) | 288, 532, 1509, 3073, 3096 |
| BceAI | ACGGC | 3 cut(s) | 2612, 3448, 3461 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 551, 585 |
| BciT130I | CCWGG | 4 cut(s) | 1293, 1370, 1915, 3559 |
| BciVI | GTATCC | 3 cut(s) | 1573, 1719, 3170 |
| BclI | TGATCA | 1 cut(s) | 2271 |
| BcnI | CCSGG | 2 cut(s) | 2581, 2727 |
| BcoDI | GTCTC | 2 cut(s) | 48, 1940 |
| BfaI | CTAG | 9 cut(s) | 240, 717, 899, 1325, 1335, 1833, 2219, 2570, 3552 |
| BfmI | CTRYAG | 1 cut(s) | 1689 |
| BfoI | RGCGCY | 1 cut(s) | 2658 |
| BfrI | CTTAAG | 1 cut(s) | 392 |
| BfuAI | ACCTGC | 1 cut(s) | 2229 |
| BfuI | GTATCC | 3 cut(s) | 1573, 1719, 3170 |
| BglII | AGATCT | 2 cut(s) | 903, 1198 |
| BlpI | GCTNAGC | 1 cut(s) | 3095 |
| BmcAI | AGTACT | 1 cut(s) | 2092 |
| Bme1390I | CCNGG | 6 cut(s) | 1293, 1370, 1915, 2581, 2727, 3559 |
| Bme18I | GGWCC | 6 cut(s) | 695, 1217, 1547, 2520, 2875, 3555 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3511 |
| BmgT120I | GGNCC | 6 cut(s) | 695, 1217, 1547, 2520, 2875, 3555 |
| BmiI | GGNNCC | 9 cut(s) | 264, 988, 1206, 1218, 1332, 2243, 2876, 2877, 3641 |
| BmrFI | CCNGG | 6 cut(s) | 1293, 1370, 1915, 2581, 2727, 3559 |
| BmrI | ACTGGG | 1 cut(s) | 3676 |
| BmuI | ACTGGG | 1 cut(s) | 3676 |
| BpiI | GAAGAC | 4 cut(s) | 2623, 2676, 2785, 3366 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 434, 466, 893, 925, 1117, 1149, 3083, 3115 |
| BpmI | CTGGAG | 7 cut(s) | 19, 30, 89, 102, 728, 1187, 1731 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3707 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3095 |
| BpuEI | CTTGAG | 2 cut(s) | 461, 3752 |
| BpuMI | CCSGG | 2 cut(s) | 2581, 2727 |
| BsaAI | YACGTR | 2 cut(s) | 947, 3158 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1169, 1199, 3055, 3085 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 125, 1214, 1226, 2407, 2529, 2779, 2804, 3125, 3340 |
| Bse1I | ACTGG | 8 cut(s) | 85, 517, 976, 1714, 2382, 3066, 3130, 3671 |
| Bse3DI | GCAATG | 1 cut(s) | 3028 |
| BseBI | CCWGG | 4 cut(s) | 1293, 1370, 1915, 3559 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 125, 1214, 1226, 2407, 2529, 2779, 2804, 3125, 3340 |
| BseMI | GCAATG | 1 cut(s) | 3028 |
| BseMII | CTCAG | 6 cut(s) | 780, 1416, 1478, 2043, 3109, 3297 |
| BseNI | ACTGG | 8 cut(s) | 85, 517, 976, 1714, 2382, 3066, 3130, 3671 |
| BseRI | GAGGAG | 5 cut(s) | 522, 588, 898, 2978, 3766 |
| BseSI | GKGCMC | 5 cut(s) | 267, 991, 1369, 1509, 2763 |
| BseYI | CCCAGC | 3 cut(s) | 2923, 3409, 3574 |
| BsgI | GTGCAG | 3 cut(s) | 752, 1833, 2630 |
| Bsh1236I | CGCG | 1 cut(s) | 489 |
| BshFI | GGCC | 2 cut(s) | 951, 2815 |
| BshNI | GGYRCC | 4 cut(s) | 262, 986, 2241, 3639 |
| BsiHKAI | GWGCWC | 5 cut(s) | 288, 532, 1509, 3073, 3096 |
| BsiSI | CCGG | 2 cut(s) | 2580, 2726 |
| BslFI | GGGAC | 6 cut(s) | 103, 402, 807, 2282, 2596, 2888 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 125, 1214, 1226, 2407, 2529, 2779, 2804, 3125, 3340 |
| BsmAI | GTCTC | 2 cut(s) | 48, 1940 |
| BsmFI | GGGAC | 6 cut(s) | 103, 402, 807, 2282, 2596, 2888 |
| BsmI | GAATGC | 4 cut(s) | 1810, 2489, 2834, 3585 |
| BsnI | GGCC | 2 cut(s) | 951, 2815 |
| Bsp1286I | GDGCHC | 9 cut(s) | 267, 288, 532, 991, 1369, 1509, 2763, 3073, 3096 |
| Bsp1407I | TGTACA | 2 cut(s) | 301, 3613 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3095 |
| Bsp19I | CCATGG | 2 cut(s) | 3306, 3716 |
| BspACI | CCGC | 6 cut(s) | 489, 1173, 2082, 2103, 2518, 2763 |
| BspANI | GGCC | 2 cut(s) | 951, 2815 |
| BspCNI | CTCAG | 6 cut(s) | 781, 1417, 1477, 2044, 3108, 3296 |
| BspFNI | CGCG | 1 cut(s) | 489 |
| BspHI | TCATGA | 1 cut(s) | 2947 |
| BspLI | GGNNCC | 9 cut(s) | 264, 988, 1206, 1218, 1332, 2243, 2876, 2877, 3641 |
| BspMI | ACCTGC | 1 cut(s) | 2229 |
| BspPI | GGATC | 6 cut(s) | 1325, 1338, 2144, 2547, 2952, 3020 |
| BspQI | GCTCTTC | 1 cut(s) | 1942 |
| BspT107I | GGYRCC | 4 cut(s) | 262, 986, 2241, 3639 |
| BspTI | CTTAAG | 1 cut(s) | 392 |
| BsrBI | CCGCTC | 1 cut(s) | 1173 |
| BsrDI | GCAATG | 1 cut(s) | 3028 |
| BsrGI | TGTACA | 2 cut(s) | 301, 3613 |
| BsrI | ACTGG | 8 cut(s) | 85, 517, 976, 1714, 2382, 3066, 3130, 3671 |
| BssT1I | CCWWGG | 6 cut(s) | 1225, 1269, 2401, 2894, 3306, 3716 |
| Bst2UI | CCWGG | 4 cut(s) | 1293, 1370, 1915, 3559 |
| Bst4CI | ACNGT | 5 cut(s) | 94, 339, 699, 798, 3034 |
| Bst6I | CTCTTC | 4 cut(s) | 1689, 1942, 2059, 3766 |
| BstAFI | CTTAAG | 1 cut(s) | 392 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 173, 1907, 2495 |
| BstAUI | TGTACA | 2 cut(s) | 301, 3613 |
| BstBAI | YACGTR | 2 cut(s) | 947, 3158 |
| BstDSI | CCRYGG | 3 cut(s) | 1667, 3306, 3716 |
| BstEII | GGTNACC | 1 cut(s) | 2410 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2802 |
| BstFNI | CGCG | 1 cut(s) | 489 |
| BstH2I | RGCGCY | 1 cut(s) | 2658 |
| BstHHI | GCGC | 2 cut(s) | 2375, 2657 |
| BstMAI | GTCTC | 2 cut(s) | 48, 1940 |
| BstNI | CCWGG | 4 cut(s) | 1293, 1370, 1915, 3559 |
| BstNSI | RCATGY | 5 cut(s) | 1452, 1910, 2191, 3107, 3254 |
| BstPI | GGTNACC | 1 cut(s) | 2410 |
| BstSCI | CCNGG | 6 cut(s) | 1291, 1368, 1913, 2579, 2725, 3557 |
| BstSFI | CTRYAG | 1 cut(s) | 1689 |
| BstSLI | GKGCMC | 5 cut(s) | 267, 991, 1369, 1509, 2763 |
| BstSNI | TACGTA | 1 cut(s) | 3158 |
| BstUI | CGCG | 1 cut(s) | 489 |
| BstV2I | GAAGAC | 4 cut(s) | 2623, 2676, 2785, 3366 |
| BstX2I | RGATCY | 4 cut(s) | 903, 1198, 1330, 2552 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 524, 983, 2509 |
| BstYI | RGATCY | 4 cut(s) | 903, 1198, 1330, 2552 |
| BsuI | GTATCC | 3 cut(s) | 1573, 1719, 3170 |
| BsuRI | GGCC | 2 cut(s) | 951, 2815 |
| BtgI | CCRYGG | 3 cut(s) | 1667, 3306, 3716 |
| BtsI | GCAGTG | 6 cut(s) | 60, 286, 569, 2174, 2618, 3471 |
| BtsIMutI | CAGTG | 9 cut(s) | 60, 286, 569, 837, 2174, 2375, 2618, 3073, 3471 |
| BveI | ACCTGC | 1 cut(s) | 2229 |
| CciI | TCATGA | 1 cut(s) | 2947 |
| CfoI | GCGC | 2 cut(s) | 2375, 2657 |
| Cfr13I | GGNCC | 6 cut(s) | 695, 1217, 1547, 2520, 2875, 3555 |
| CsiI | ACCWGGT | 1 cut(s) | 3557 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1004, 1039 |
| DraI | TTTAAA | 2 cut(s) | 853, 2424 |
| DraIII | CACNNNGTG | 1 cut(s) | 2779 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3511 |
| EaeI | YGGCCR | 1 cut(s) | 949 |
| Eam1104I | CTCTTC | 4 cut(s) | 1689, 1942, 2059, 3766 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3511 |
| EarI | CTCTTC | 4 cut(s) | 1689, 1942, 2059, 3766 |
| EciI | GGCGGA | 1 cut(s) | 2092 |
| Ecl136II | GAGCTC | 1 cut(s) | 3094 |
| Eco105I | TACGTA | 1 cut(s) | 3158 |
| Eco130I | CCWWGG | 6 cut(s) | 1225, 1269, 2401, 2894, 3306, 3716 |
| Eco147I | AGGCCT | 1 cut(s) | 2815 |
| Eco24I | GRGCYC | 1 cut(s) | 3096 |
| Eco32I | GATATC | 2 cut(s) | 2046, 3604 |
| Eco47I | GGWCC | 6 cut(s) | 695, 1217, 1547, 2520, 2875, 3555 |
| Eco47III | AGCGCT | 1 cut(s) | 2656 |
| Eco53kI | GAGCTC | 1 cut(s) | 3094 |
| Eco57I | CTGAAG | 3 cut(s) | 1179, 1611, 3465 |
| Eco72I | CACGTG | 1 cut(s) | 947 |
| Eco91I | GGTNACC | 1 cut(s) | 2410 |
| EcoICRI | GAGCTC | 1 cut(s) | 3094 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2802 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2875, 3555 |
| EcoO65I | GGTNACC | 1 cut(s) | 2410 |
| EcoRI | GAATTC | 2 cut(s) | 1458, 1976 |
| EcoRII | CCWGG | 4 cut(s) | 1291, 1368, 1913, 3557 |
| EcoRV | GATATC | 2 cut(s) | 2046, 3604 |
| EcoT14I | CCWWGG | 6 cut(s) | 1225, 1269, 2401, 2894, 3306, 3716 |
| EcoT38I | GRGCYC | 1 cut(s) | 3096 |
| ErhI | CCWWGG | 6 cut(s) | 1225, 1269, 2401, 2894, 3306, 3716 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 755, 787, 1933, 1965 |
| FaqI | GGGAC | 6 cut(s) | 103, 402, 807, 2282, 2596, 2888 |
| FauI | CCCGC | 1 cut(s) | 2770 |
| FbaI | TGATCA | 1 cut(s) | 2271 |
| FblI | GTMKAC | 1 cut(s) | 3154 |
| FriOI | GRGCYC | 1 cut(s) | 3096 |
| FspBI | CTAG | 9 cut(s) | 240, 717, 899, 1325, 1335, 1833, 2219, 2570, 3552 |
| GlaI | GCGC | 2 cut(s) | 2374, 2656 |
| GsaI | CCCAGC | 3 cut(s) | 2927, 3413, 3578 |
| GsuI | CTGGAG | 7 cut(s) | 19, 30, 89, 102, 728, 1187, 1731 |
| HaeII | RGCGCY | 1 cut(s) | 2658 |
| HaeIII | GGCC | 2 cut(s) | 951, 2815 |
| HapII | CCGG | 2 cut(s) | 2580, 2726 |
| HhaI | GCGC | 2 cut(s) | 2375, 2657 |
| Hin6I | GCGC | 2 cut(s) | 2373, 2655 |
| HinP1I | GCGC | 2 cut(s) | 2373, 2655 |
| HincII | GTYRAC | 5 cut(s) | 494, 1845, 2267, 3112, 3193 |
| HindII | GTYRAC | 5 cut(s) | 494, 1845, 2267, 3112, 3193 |
| HindIII | AAGCTT | 5 cut(s) | 437, 549, 728, 1008, 2504 |
| HpaII | CCGG | 2 cut(s) | 2580, 2726 |
| Hpy99I | CGWCG | 2 cut(s) | 1795, 2420 |
| HpyCH4III | ACNGT | 5 cut(s) | 94, 339, 699, 798, 3034 |
| HpyCH4IV | ACGT | 9 cut(s) | 946, 1956, 2418, 2623, 2694, 2757, 3157, 3217, 3366 |
| HpySE526I | ACGT | 9 cut(s) | 946, 1956, 2418, 2623, 2694, 2757, 3157, 3217, 3366 |
| HspAI | GCGC | 2 cut(s) | 2373, 2655 |
| KflI | GGGWCCC | 1 cut(s) | 2875 |
| KpnI | GGTACC | 2 cut(s) | 2245, 3643 |
| Ksp22I | TGATCA | 1 cut(s) | 2271 |
| LguI | GCTCTTC | 1 cut(s) | 1942 |
| LmnI | GCTCC | 6 cut(s) | 535, 628, 1087, 2235, 3076, 3465 |
| MabI | ACCWGGT | 1 cut(s) | 3557 |
| MaeI | CTAG | 9 cut(s) | 240, 717, 899, 1325, 1335, 1833, 2219, 2570, 3552 |
| MaeII | ACGT | 9 cut(s) | 946, 1956, 2418, 2623, 2694, 2757, 3157, 3217, 3366 |
| MaeIII | GTNAC | 9 cut(s) | 55, 978, 1519, 1883, 2410, 2840, 2953, 2968, 3646 |
| MbiI | CCGCTC | 1 cut(s) | 1173 |
| MfeI | CAATTG | 3 cut(s) | 17, 2342, 2647 |
| MflI | RGATCY | 4 cut(s) | 903, 1198, 1330, 2552 |
| MhlI | GDGCHC | 9 cut(s) | 267, 288, 532, 991, 1369, 1509, 2763, 3073, 3096 |
| MlsI | TGGCCA | 1 cut(s) | 951 |
| MluNI | TGGCCA | 1 cut(s) | 951 |
| MlyI | GAGTC | 7 cut(s) | 50, 1804, 2112, 2304, 2984, 3107, 3521 |
| MmeI | TCCRAC | 2 cut(s) | 2229, 3262 |
| Mox20I | TGGCCA | 1 cut(s) | 951 |
| MroXI | GAANNNNTTC | 4 cut(s) | 918, 1980, 2466, 3760 |
| MscI | TGGCCA | 1 cut(s) | 951 |
| MslI | CAYNNNNRTG | 3 cut(s) | 945, 1284, 2823 |
| Msp20I | TGGCCA | 1 cut(s) | 951 |
| MspCI | CTTAAG | 1 cut(s) | 392 |
| MspI | CCGG | 2 cut(s) | 2580, 2726 |
| MspR9I | CCNGG | 6 cut(s) | 1293, 1370, 1915, 2581, 2727, 3559 |
| MunI | CAATTG | 3 cut(s) | 17, 2342, 2647 |
| Mva1269I | GAATGC | 4 cut(s) | 1810, 2489, 2834, 3585 |
| MvaI | CCWGG | 4 cut(s) | 1293, 1370, 1915, 3559 |
| MvnI | CGCG | 1 cut(s) | 489 |
| NciI | CCSGG | 2 cut(s) | 2581, 2727 |
| NcoI | CCATGG | 2 cut(s) | 3306, 3716 |
| NlaIV | GGNNCC | 9 cut(s) | 264, 988, 1206, 1218, 1332, 2243, 2876, 2877, 3641 |
| NmeAIII | GCCGAG | 1 cut(s) | 3115 |
| NmuCI | GTSAC | 5 cut(s) | 55, 1883, 2410, 2840, 2953 |
| NspI | RCATGY | 5 cut(s) | 1452, 1910, 2191, 3107, 3254 |
| PaeI | GCATGC | 2 cut(s) | 1452, 3107 |
| PagI | TCATGA | 1 cut(s) | 2947 |
| PceI | AGGCCT | 1 cut(s) | 2815 |
| PciI | ACATGT | 1 cut(s) | 3250 |
| PciSI | GCTCTTC | 1 cut(s) | 1942 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1576, 2298, 3154 |
| PctI | GAATGC | 4 cut(s) | 1810, 2489, 2834, 3585 |
| PdmI | GAANNNNTTC | 4 cut(s) | 918, 1980, 2466, 3760 |
| PfeI | GAWTC | 4 cut(s) | 422, 655, 3269, 3517 |
| PflFI | GACNNNGTC | 1 cut(s) | 3365 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1226, 2779 |
| PfoI | TCCNGGA | 1 cut(s) | 2725 |
| PleI | GAGTC | 7 cut(s) | 49, 1803, 2112, 2303, 2983, 3107, 3520 |
| PmaCI | CACGTG | 1 cut(s) | 947 |
| PmlI | CACGTG | 1 cut(s) | 947 |
| PpsI | GAGTC | 7 cut(s) | 49, 1803, 2112, 2303, 2983, 3107, 3520 |
| Ppu21I | YACGTR | 2 cut(s) | 947, 3158 |
| PpuMI | RGGWCCY | 2 cut(s) | 2875, 3555 |
| PscI | ACATGT | 1 cut(s) | 3250 |
| PsiI | TTATAA | 2 cut(s) | 681, 1140 |
| Psp124BI | GAGCTC | 1 cut(s) | 3096 |
| Psp5II | RGGWCCY | 2 cut(s) | 2875, 3555 |
| Psp6I | CCWGG | 4 cut(s) | 1291, 1368, 1913, 3557 |
| PspCI | CACGTG | 1 cut(s) | 947 |
| PspEI | GGTNACC | 1 cut(s) | 2410 |
| PspFI | CCCAGC | 3 cut(s) | 2923, 3409, 3574 |
| PspGI | CCWGG | 4 cut(s) | 1291, 1368, 1913, 3557 |
| PspN4I | GGNNCC | 9 cut(s) | 264, 988, 1206, 1218, 1332, 2243, 2876, 2877, 3641 |
| PspPI | GGNCC | 6 cut(s) | 695, 1217, 1547, 2520, 2875, 3555 |
| PspPPI | RGGWCCY | 2 cut(s) | 2875, 3555 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1633, 1665 |
| PsuI | RGATCY | 4 cut(s) | 903, 1198, 1330, 2552 |
| PsyI | GACNNNGTC | 1 cut(s) | 3365 |
| RseI | CAYNNNNRTG | 3 cut(s) | 945, 1284, 2823 |
| SacI | GAGCTC | 1 cut(s) | 3096 |
| SapI | GCTCTTC | 1 cut(s) | 1942 |
| Sau96I | GGNCC | 6 cut(s) | 695, 1217, 1547, 2520, 2875, 3555 |
| ScaI | AGTACT | 1 cut(s) | 2092 |
| SchI | GAGTC | 7 cut(s) | 50, 1804, 2112, 2304, 2984, 3107, 3521 |
| ScrFI | CCNGG | 6 cut(s) | 1293, 1370, 1915, 2581, 2727, 3559 |
| SduI | GDGCHC | 9 cut(s) | 267, 288, 532, 991, 1369, 1509, 2763, 3073, 3096 |
| SexAI | ACCWGGT | 1 cut(s) | 3557 |
| SfcI | CTRYAG | 1 cut(s) | 1689 |
| SinI | GGWCC | 6 cut(s) | 695, 1217, 1547, 2520, 2875, 3555 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 945, 1284, 2823 |
| SmlI | CTYRAG | 3 cut(s) | 392, 440, 3767 |
| SmoI | CTYRAG | 3 cut(s) | 392, 440, 3767 |
| SnaBI | TACGTA | 1 cut(s) | 3158 |
| SphI | GCATGC | 2 cut(s) | 1452, 3107 |
| SseBI | AGGCCT | 1 cut(s) | 2815 |
| SsiI | CCGC | 6 cut(s) | 489, 1173, 2082, 2103, 2518, 2763 |
| SspI | AATATT | 2 cut(s) | 859, 2018 |
| SspMI | CTAG | 9 cut(s) | 240, 717, 899, 1325, 1335, 1833, 2219, 2570, 3552 |
| SstI | GAGCTC | 1 cut(s) | 3096 |
| StuI | AGGCCT | 1 cut(s) | 2815 |
| StyD4I | CCNGG | 6 cut(s) | 1291, 1368, 1913, 2579, 2725, 3557 |
| StyI | CCWWGG | 6 cut(s) | 1225, 1269, 2401, 2894, 3306, 3716 |
| TaaI | ACNGT | 5 cut(s) | 94, 339, 699, 798, 3034 |
| TaiI | ACGT | 9 cut(s) | 949, 1959, 2421, 2626, 2697, 2760, 3160, 3220, 3369 |
| TaqI | TCGA | 8 cut(s) | 205, 571, 1030, 1793, 1974, 2116, 2313, 3515 |
| TatI | WGTACW | 6 cut(s) | 301, 1190, 1431, 1440, 2090, 3613 |
| TauI | GCSGC | 2 cut(s) | 1176, 2085 |
| TfiI | GAWTC | 4 cut(s) | 422, 655, 3269, 3517 |
| TscAI | CASTG | 9 cut(s) | 60, 293, 569, 837, 2181, 2382, 2618, 3073, 3478 |
| TseFI | GTSAC | 5 cut(s) | 55, 1883, 2410, 2840, 2953 |
| Tsp45I | GTSAC | 5 cut(s) | 55, 1883, 2410, 2840, 2953 |
| TspGWI | ACGGA | 2 cut(s) | 1684, 2865 |
| TspRI | CASTG | 9 cut(s) | 60, 293, 569, 837, 2181, 2382, 2618, 3073, 3478 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3365 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1226, 2779 |
| Vha464I | CTTAAG | 1 cut(s) | 392 |
| VneI | GTGCAC | 1 cut(s) | 1505 |
| VpaK11BI | GGWCC | 6 cut(s) | 695, 1217, 1547, 2520, 2875, 3555 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2802 |
| XbaI | TCTAGA | 1 cut(s) | 1832 |
| XceI | RCATGY | 5 cut(s) | 1452, 1910, 2191, 3107, 3254 |
| XmiI | GTMKAC | 1 cut(s) | 3154 |
| XmnI | GAANNNNTTC | 4 cut(s) | 918, 1980, 2466, 3760 |
| XspI | CTAG | 9 cut(s) | 240, 717, 899, 1325, 1335, 1833, 2219, 2570, 3552 |
| ZrmI | AGTACT | 1 cut(s) | 2092 |