Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PH_RDR2 | PF24823 | 42 - 177 | 1.3e-31 | RDR2 PH-like domain |
| RdRP_helical | PF26252 | 195 - 275 | 8.6e-11 | RNA dependent RNA polymerase, helical domain |
| RdRP | PF05183 | 294 - 855 | 1.8e-186 | RNA dependent RNA polymerase |
| RdRP_head | PF26253 | 879 - 1028 | 1.2e-42 | RdRP, head domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 360, 690, 1797 |
| Acc65I | GGTACC | 1 cut(s) | 2952 |
| AccB1I | GGYRCC | 3 cut(s) | 88, 344, 2952 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2122, 2444 |
| AccBSI | CCGCTC | 1 cut(s) | 7 |
| AccI | GTMKAC | 1 cut(s) | 897 |
| AccII | CGCG | 2 cut(s) | 304, 2215 |
| AcsI | RAATTY | 6 cut(s) | 320, 634, 683, 1162, 1406, 1881 |
| AcuI | CTGAAG | 3 cut(s) | 557, 972, 2772 |
| AdeI | CACNNNGTG | 1 cut(s) | 2122 |
| AfaI | GTAC | 4 cut(s) | 803, 1595, 2451, 2954 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 596, 2122, 2146, 2444, 2613 |
| AflIII | ACRYGT | 1 cut(s) | 798 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 2477, 2818 |
| AhlI | ACTAGT | 1 cut(s) | 2452 |
| AjnI | CCWGG | 5 cut(s) | 738, 1265, 1292, 1578, 2068 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1358, 1390, 2309, 2341 |
| Alw21I | GWGCWC | 3 cut(s) | 98, 222, 478 |
| Alw26I | GTCTC | 3 cut(s) | 1209, 1292, 3003 |
| Alw44I | GTGCAC | 2 cut(s) | 218, 474 |
| Ama87I | CYCGRG | 1 cut(s) | 662 |
| AoxI | GGCC | 1 cut(s) | 1192 |
| ApaLI | GTGCAC | 2 cut(s) | 218, 474 |
| ApeKI | GCWGC | 8 cut(s) | 65, 76, 292, 426, 1262, 2157, 2322, 2933 |
| ApoI | RAATTY | 6 cut(s) | 320, 634, 683, 1162, 1406, 1881 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1508, 1540 |
| AseI | ATTAAT | 2 cut(s) | 2676, 2826 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1332, 1704, 2552 |
| Asp718I | GGTACC | 1 cut(s) | 2952 |
| AspA2I | CCTAGG | 1 cut(s) | 595 |
| AspS9I | GGNCC | 3 cut(s) | 13, 908, 1192 |
| AsuC2I | CCSGG | 3 cut(s) | 663, 664, 1930 |
| AsuHPI | GGTGA | 7 cut(s) | 49, 822, 1124, 1238, 1618, 1961, 2210 |
| AsuII | TTCGAA | 2 cut(s) | 1551, 3042 |
| AvaI | CYCGRG | 1 cut(s) | 662 |
| AvaII | GGWCC | 2 cut(s) | 13, 908 |
| AvrII | CCTAGG | 1 cut(s) | 595 |
| AxyI | CCTNAGG | 1 cut(s) | 912 |
| BaeGI | GKGCMC | 3 cut(s) | 222, 349, 478 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2769, 2802 |
| BamHI | GGATCC | 1 cut(s) | 700 |
| BanI | GGYRCC | 3 cut(s) | 88, 344, 2952 |
| BanII | GRGCYC | 1 cut(s) | 98 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1180, 1212, 2745, 2777 |
| Bbv12I | GWGCWC | 3 cut(s) | 98, 222, 478 |
| BbvI | GCAGC | 8 cut(s) | 77, 88, 279, 413, 1274, 2169, 2334, 2945 |
| BceAI | ACGGC | 1 cut(s) | 1798 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1125, 1135, 1159, 1169 |
| BciT130I | CCWGG | 5 cut(s) | 740, 1267, 1294, 1580, 2070 |
| BciVI | GTATCC | 1 cut(s) | 1071 |
| BclI | TGATCA | 1 cut(s) | 1623 |
| BcnI | CCSGG | 3 cut(s) | 663, 664, 1930 |
| BcoDI | GTCTC | 3 cut(s) | 1209, 1292, 3003 |
| BcuI | ACTAGT | 1 cut(s) | 2452 |
| BfaI | CTAG | 8 cut(s) | 572, 596, 695, 708, 1133, 1919, 2453, 2613 |
| BfmI | CTRYAG | 1 cut(s) | 1014 |
| BfuI | GTATCC | 1 cut(s) | 1071 |
| BglII | AGATCT | 1 cut(s) | 1901 |
| BlnI | CCTAGG | 1 cut(s) | 595 |
| Bme1390I | CCNGG | 8 cut(s) | 663, 664, 740, 1267, 1294, 1580, 1930, 2070 |
| Bme18I | GGWCC | 2 cut(s) | 13, 908 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 2477, 2818 |
| BmeT110I | CYCGRG | 1 cut(s) | 662 |
| BmgT120I | GGNCC | 3 cut(s) | 13, 908, 1192 |
| BmiI | GGNNCC | 8 cut(s) | 90, 346, 381, 588, 702, 1193, 1363, 2954 |
| BmrFI | CCNGG | 8 cut(s) | 663, 664, 740, 1267, 1294, 1580, 1930, 2070 |
| BmsI | GCATC | 8 cut(s) | 125, 438, 996, 1818, 1856, 2340, 2671, 2951 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 251, 283 |
| BpmI | CTGGAG | 1 cut(s) | 2091 |
| Bpu14I | TTCGAA | 2 cut(s) | 1551, 3042 |
| BpuEI | CTTGAG | 1 cut(s) | 278 |
| BpuMI | CCSGG | 3 cut(s) | 663, 664, 1930 |
| BsaAI | YACGTR | 1 cut(s) | 341 |
| BsaI | GGTCTC | 1 cut(s) | 3003 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 21, 51, 364, 394, 1048, 1078 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 596, 2122, 2146, 2444, 2613 |
| Bse1I | ACTGG | 8 cut(s) | 334, 482, 1062, 1223, 1743, 1990, 2265, 2449 |
| Bse21I | CCTNAGG | 1 cut(s) | 912 |
| Bse3DI | GCAATG | 2 cut(s) | 1692, 1967 |
| BseBI | CCWGG | 5 cut(s) | 740, 1267, 1294, 1580, 2070 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 596, 2122, 2146, 2444, 2613 |
| BseMI | GCAATG | 2 cut(s) | 1692, 1967 |
| BseMII | CTCAG | 5 cut(s) | 138, 839, 903, 2756, 3011 |
| BseNI | ACTGG | 8 cut(s) | 334, 482, 1062, 1223, 1743, 1990, 2265, 2449 |
| BseRI | GAGGAG | 3 cut(s) | 42, 164, 2306 |
| BseSI | GKGCMC | 3 cut(s) | 222, 349, 478 |
| BseXI | GCAGC | 8 cut(s) | 77, 88, 279, 413, 1274, 2169, 2334, 2945 |
| BseYI | CCCAGC | 4 cut(s) | 393, 2190, 2242, 2716 |
| BsgI | GTGCAG | 2 cut(s) | 1062, 1185 |
| Bsh1236I | CGCG | 2 cut(s) | 304, 2215 |
| BshFI | GGCC | 1 cut(s) | 1194 |
| BshNI | GGYRCC | 3 cut(s) | 88, 344, 2952 |
| BsiHKAI | GWGCWC | 3 cut(s) | 98, 222, 478 |
| BsiHKCI | CYCGRG | 1 cut(s) | 662 |
| BsiSI | CCGG | 4 cut(s) | 283, 558, 663, 1929 |
| BslFI | GGGAC | 1 cut(s) | 1945 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 596, 2122, 2146, 2444, 2613 |
| BsmAI | GTCTC | 3 cut(s) | 1209, 1292, 3003 |
| BsmFI | GGGAC | 1 cut(s) | 1945 |
| BsnI | GGCC | 1 cut(s) | 1194 |
| Bso31I | GGTCTC | 1 cut(s) | 3003 |
| BsoBI | CYCGRG | 1 cut(s) | 662 |
| Bsp119I | TTCGAA | 2 cut(s) | 1551, 3042 |
| Bsp1286I | GDGCHC | 4 cut(s) | 98, 222, 349, 478 |
| Bsp1407I | TGTACA | 1 cut(s) | 801 |
| Bsp19I | CCATGG | 1 cut(s) | 3029 |
| BspANI | GGCC | 1 cut(s) | 1194 |
| BspCNI | CTCAG | 5 cut(s) | 139, 838, 904, 2757, 3012 |
| BspFNI | CGCG | 2 cut(s) | 304, 2215 |
| BspLI | GGNNCC | 8 cut(s) | 90, 346, 381, 588, 702, 1193, 1363, 2954 |
| BspQI | GCTCTTC | 1 cut(s) | 1294 |
| BspT104I | TTCGAA | 2 cut(s) | 1551, 3042 |
| BspT107I | GGYRCC | 3 cut(s) | 88, 344, 2952 |
| BspTNI | GGTCTC | 1 cut(s) | 3003 |
| BsrBI | CCGCTC | 1 cut(s) | 7 |
| BsrDI | GCAATG | 2 cut(s) | 1692, 1967 |
| BsrGI | TGTACA | 1 cut(s) | 801 |
| BsrI | ACTGG | 8 cut(s) | 334, 482, 1062, 1223, 1743, 1990, 2265, 2449 |
| BssNAI | GTATAC | 1 cut(s) | 898 |
| BssT1I | CCWWGG | 5 cut(s) | 595, 759, 1642, 2578, 3029 |
| Bst1107I | GTATAC | 1 cut(s) | 898 |
| Bst2UI | CCWGG | 5 cut(s) | 740, 1267, 1294, 1580, 2070 |
| Bst4CI | ACNGT | 8 cut(s) | 528, 653, 732, 750, 1309, 2026, 2254, 2868 |
| Bst6I | CTCTTC | 4 cut(s) | 448, 533, 1041, 1294 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2473 |
| BstAUI | TGTACA | 1 cut(s) | 801 |
| BstBAI | YACGTR | 1 cut(s) | 341 |
| BstBI | TTCGAA | 2 cut(s) | 1551, 3042 |
| BstC8I | GCNNGC | 6 cut(s) | 55, 669, 811, 815, 2008, 2106 |
| BstDEI | CTNAG | 6 cut(s) | 147, 825, 912, 1091, 2765, 3020 |
| BstDSI | CCRYGG | 2 cut(s) | 2213, 3029 |
| BstEII | GGTNACC | 1 cut(s) | 2198 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2611 |
| BstFNI | CGCG | 2 cut(s) | 304, 2215 |
| BstMAI | GTCTC | 3 cut(s) | 1209, 1292, 3003 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 301, 1259, 1409, 1476, 1733, 2328, 2473, 2939 |
| BstNI | CCWGG | 5 cut(s) | 740, 1267, 1294, 1580, 2070 |
| BstNSI | RCATGY | 3 cut(s) | 802, 813, 1543 |
| BstPI | GGTNACC | 1 cut(s) | 2198 |
| BstSCI | CCNGG | 8 cut(s) | 661, 662, 738, 1265, 1292, 1578, 1928, 2068 |
| BstSFI | CTRYAG | 1 cut(s) | 1014 |
| BstSLI | GKGCMC | 3 cut(s) | 222, 349, 478 |
| BstUI | CGCG | 2 cut(s) | 304, 2215 |
| BstV1I | GCAGC | 8 cut(s) | 77, 88, 279, 413, 1274, 2169, 2334, 2945 |
| BstX2I | RGATCY | 3 cut(s) | 261, 700, 1901 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 341 |
| BstYI | RGATCY | 3 cut(s) | 261, 700, 1901 |
| BstZ17I | GTATAC | 1 cut(s) | 898 |
| Bsu36I | CCTNAGG | 1 cut(s) | 912 |
| BsuI | GTATCC | 1 cut(s) | 1071 |
| BsuRI | GGCC | 1 cut(s) | 1194 |
| BtgI | CCRYGG | 2 cut(s) | 2213, 3029 |
| BtsI | GCAGTG | 2 cut(s) | 39, 64 |
| BtsIMutI | CAGTG | 5 cut(s) | 39, 64, 1069, 1736, 1983 |
| Cac8I | GCNNGC | 6 cut(s) | 55, 669, 811, 815, 2008, 2106 |
| Cfr13I | GGNCC | 3 cut(s) | 13, 908, 1192 |
| Cfr42I | CCGCGG | 1 cut(s) | 2216 |
| Cfr9I | CCCGGG | 1 cut(s) | 662 |
| Csp6I | GTAC | 4 cut(s) | 802, 1594, 2450, 2953 |
| CviQI | GTAC | 4 cut(s) | 802, 1594, 2450, 2953 |
| DdeI | CTNAG | 6 cut(s) | 147, 825, 912, 1091, 2765, 3020 |
| DraI | TTTAAA | 2 cut(s) | 1753, 1776 |
| DraIII | CACNNNGTG | 1 cut(s) | 2122 |
| DriI | GACNNNNNGTC | 2 cut(s) | 2477, 2818 |
| Eam1104I | CTCTTC | 4 cut(s) | 448, 533, 1041, 1294 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 2477, 2818 |
| EarI | CTCTTC | 4 cut(s) | 448, 533, 1041, 1294 |
| EciI | GGCGGA | 3 cut(s) | 125, 1374, 1444 |
| Ecl136II | GAGCTC | 1 cut(s) | 96 |
| Eco130I | CCWWGG | 5 cut(s) | 595, 759, 1642, 2578, 3029 |
| Eco24I | GRGCYC | 1 cut(s) | 98 |
| Eco31I | GGTCTC | 1 cut(s) | 3003 |
| Eco32I | GATATC | 4 cut(s) | 144, 958, 1398, 2917 |
| Eco47I | GGWCC | 2 cut(s) | 13, 908 |
| Eco53kI | GAGCTC | 1 cut(s) | 96 |
| Eco57I | CTGAAG | 3 cut(s) | 557, 972, 2772 |
| Eco81I | CCTNAGG | 1 cut(s) | 912 |
| Eco88I | CYCGRG | 1 cut(s) | 662 |
| Eco91I | GGTNACC | 1 cut(s) | 2198 |
| EcoICRI | GAGCTC | 1 cut(s) | 96 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2611 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1192 |
| EcoO65I | GGTNACC | 1 cut(s) | 2198 |
| EcoRI | GAATTC | 1 cut(s) | 1162 |
| EcoRII | CCWGG | 5 cut(s) | 738, 1265, 1292, 1578, 2068 |
| EcoRV | GATATC | 4 cut(s) | 144, 958, 1398, 2917 |
| EcoT14I | CCWWGG | 5 cut(s) | 595, 759, 1642, 2578, 3029 |
| EcoT38I | GRGCYC | 1 cut(s) | 98 |
| ErhI | CCWWGG | 5 cut(s) | 595, 759, 1642, 2578, 3029 |
| FaqI | GGGAC | 1 cut(s) | 1945 |
| FauI | CCCGC | 1 cut(s) | 1149 |
| FbaI | TGATCA | 1 cut(s) | 1623 |
| FblI | GTMKAC | 1 cut(s) | 897 |
| FriOI | GRGCYC | 1 cut(s) | 98 |
| FspBI | CTAG | 8 cut(s) | 572, 596, 695, 708, 1133, 1919, 2453, 2613 |
| GsaI | CCCAGC | 4 cut(s) | 397, 2194, 2246, 2720 |
| GsuI | CTGGAG | 1 cut(s) | 2091 |
| HaeIII | GGCC | 1 cut(s) | 1194 |
| HapII | CCGG | 4 cut(s) | 283, 558, 663, 1929 |
| HincII | GTYRAC | 1 cut(s) | 1619 |
| HindII | GTYRAC | 1 cut(s) | 1619 |
| HindIII | AAGCTT | 2 cut(s) | 254, 2549 |
| HpaII | CCGG | 4 cut(s) | 283, 558, 663, 1929 |
| HphI | GGTGA | 7 cut(s) | 49, 822, 1124, 1238, 1618, 1961, 2210 |
| Hpy166II | GTNNAC | 9 cut(s) | 40, 220, 476, 505, 898, 1619, 1638, 2063, 2450 |
| Hpy8I | GTNNAC | 9 cut(s) | 40, 220, 476, 505, 898, 1619, 1638, 2063, 2450 |
| Hpy99I | CGWCG | 1 cut(s) | 1147 |
| HpyAV | CCTTC | 6 cut(s) | 497, 845, 1182, 1694, 2371, 2617 |
| HpyCH4III | ACNGT | 8 cut(s) | 528, 653, 732, 750, 1309, 2026, 2254, 2868 |
| HpyCH4IV | ACGT | 1 cut(s) | 340 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 301, 1259, 1409, 1476, 1733, 2328, 2473, 2939 |
| HpyF3I | CTNAG | 6 cut(s) | 147, 825, 912, 1091, 2765, 3020 |
| HpySE526I | ACGT | 1 cut(s) | 340 |
| KpnI | GGTACC | 1 cut(s) | 2956 |
| Ksp22I | TGATCA | 1 cut(s) | 1623 |
| KspI | CCGCGG | 1 cut(s) | 2216 |
| LguI | GCTCTTC | 1 cut(s) | 1294 |
| LmnI | GCTCC | 6 cut(s) | 29, 385, 457, 592, 1587, 2418 |
| Lsp1109I | GCAGC | 8 cut(s) | 77, 88, 279, 413, 1274, 2169, 2334, 2945 |
| LweI | GCATC | 8 cut(s) | 125, 438, 996, 1818, 1856, 2340, 2671, 2951 |
| MaeI | CTAG | 8 cut(s) | 572, 596, 695, 708, 1133, 1919, 2453, 2613 |
| MaeII | ACGT | 1 cut(s) | 340 |
| MbiI | CCGCTC | 1 cut(s) | 7 |
| MflI | RGATCY | 3 cut(s) | 261, 700, 1901 |
| MhlI | GDGCHC | 4 cut(s) | 98, 222, 349, 478 |
| MlyI | GAGTC | 4 cut(s) | 1156, 2303, 2537, 2828 |
| MmeI | TCCRAC | 3 cut(s) | 1291, 1529, 2581 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1332, 1704, 2552 |
| MslI | CAYNNNNRTG | 3 cut(s) | 469, 2421, 2947 |
| MspA1I | CMGCKG | 3 cut(s) | 393, 1696, 2215 |
| MspI | CCGG | 4 cut(s) | 283, 558, 663, 1929 |
| MspR9I | CCNGG | 8 cut(s) | 663, 664, 740, 1267, 1294, 1580, 1930, 2070 |
| MvaI | CCWGG | 5 cut(s) | 740, 1267, 1294, 1580, 2070 |
| MvnI | CGCG | 2 cut(s) | 304, 2215 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 301, 1259, 1409, 1476, 1733, 2328, 2473, 2939 |
| NciI | CCSGG | 3 cut(s) | 663, 664, 1930 |
| NcoI | CCATGG | 1 cut(s) | 3029 |
| NlaIV | GGNNCC | 8 cut(s) | 90, 346, 381, 588, 702, 1193, 1363, 2954 |
| NmuCI | GTSAC | 9 cut(s) | 80, 118, 190, 545, 828, 1235, 2198, 2510, 2690 |
| NspI | RCATGY | 3 cut(s) | 802, 813, 1543 |
| NspV | TTCGAA | 2 cut(s) | 1551, 3042 |
| PaeI | GCATGC | 1 cut(s) | 813 |
| PciI | ACATGT | 1 cut(s) | 798 |
| PciSI | GCTCTTC | 1 cut(s) | 1294 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 937 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1332, 1704, 2552 |
| PfeI | GAWTC | 9 cut(s) | 618, 820, 1553, 1690, 1705, 2206, 2432, 2661, 2878 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2122, 2444 |
| PleI | GAGTC | 4 cut(s) | 1155, 2302, 2536, 2827 |
| PpsI | GAGTC | 4 cut(s) | 1155, 2302, 2536, 2827 |
| Ppu21I | YACGTR | 1 cut(s) | 341 |
| PscI | ACATGT | 1 cut(s) | 798 |
| PshBI | ATTAAT | 2 cut(s) | 2676, 2826 |
| PsiI | TTATAA | 3 cut(s) | 360, 690, 1797 |
| Psp124BI | GAGCTC | 1 cut(s) | 98 |
| Psp6I | CCWGG | 5 cut(s) | 738, 1265, 1292, 1578, 2068 |
| PspEI | GGTNACC | 1 cut(s) | 2198 |
| PspFI | CCCAGC | 4 cut(s) | 393, 2190, 2242, 2716 |
| PspGI | CCWGG | 5 cut(s) | 738, 1265, 1292, 1578, 2068 |
| PspN4I | GGNNCC | 8 cut(s) | 90, 346, 381, 588, 702, 1193, 1363, 2954 |
| PspPI | GGNCC | 3 cut(s) | 13, 908, 1192 |
| PsuI | RGATCY | 3 cut(s) | 261, 700, 1901 |
| PvuII | CAGCTG | 1 cut(s) | 1696 |
| RsaI | GTAC | 4 cut(s) | 803, 1595, 2451, 2954 |
| RsaNI | GTAC | 4 cut(s) | 802, 1594, 2450, 2953 |
| RseI | CAYNNNNRTG | 3 cut(s) | 469, 2421, 2947 |
| SacI | GAGCTC | 1 cut(s) | 98 |
| SacII | CCGCGG | 1 cut(s) | 2216 |
| SapI | GCTCTTC | 1 cut(s) | 1294 |
| Sau96I | GGNCC | 3 cut(s) | 13, 908, 1192 |
| SchI | GAGTC | 4 cut(s) | 1156, 2303, 2537, 2828 |
| ScrFI | CCNGG | 8 cut(s) | 663, 664, 740, 1267, 1294, 1580, 1930, 2070 |
| SduI | GDGCHC | 4 cut(s) | 98, 222, 349, 478 |
| SfaNI | GCATC | 8 cut(s) | 125, 438, 996, 1818, 1856, 2340, 2671, 2951 |
| SfcI | CTRYAG | 1 cut(s) | 1014 |
| Sfr303I | CCGCGG | 1 cut(s) | 2216 |
| SfuI | TTCGAA | 2 cut(s) | 1551, 3042 |
| SgrBI | CCGCGG | 1 cut(s) | 2216 |
| SinI | GGWCC | 2 cut(s) | 13, 908 |
| SmaI | CCCGGG | 1 cut(s) | 664 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 469, 2421, 2947 |
| SmlI | CTYRAG | 1 cut(s) | 257 |
| SmoI | CTYRAG | 1 cut(s) | 257 |
| SpeI | ACTAGT | 1 cut(s) | 2452 |
| SphI | GCATGC | 1 cut(s) | 813 |
| SspI | AATATT | 1 cut(s) | 1370 |
| SspMI | CTAG | 8 cut(s) | 572, 596, 695, 708, 1133, 1919, 2453, 2613 |
| SstI | GAGCTC | 1 cut(s) | 98 |
| StyD4I | CCNGG | 8 cut(s) | 661, 662, 738, 1265, 1292, 1578, 1928, 2068 |
| StyI | CCWWGG | 5 cut(s) | 595, 759, 1642, 2578, 3029 |
| TaaI | ACNGT | 8 cut(s) | 528, 653, 732, 750, 1309, 2026, 2254, 2868 |
| TaiI | ACGT | 1 cut(s) | 343 |
| TaqI | TCGA | 8 cut(s) | 400, 960, 1145, 1500, 1551, 2822, 2874, 3042 |
| TatI | WGTACW | 2 cut(s) | 801, 2449 |
| TauI | GCSGC | 3 cut(s) | 7, 2218, 2467 |
| TfiI | GAWTC | 9 cut(s) | 618, 820, 1553, 1690, 1705, 2206, 2432, 2661, 2878 |
| TscAI | CASTG | 5 cut(s) | 39, 64, 1069, 1743, 1990 |
| TseFI | GTSAC | 9 cut(s) | 80, 118, 190, 545, 828, 1235, 2198, 2510, 2690 |
| TseI | GCWGC | 8 cut(s) | 65, 76, 292, 426, 1262, 2157, 2322, 2933 |
| Tsp45I | GTSAC | 9 cut(s) | 80, 118, 190, 545, 828, 1235, 2198, 2510, 2690 |
| TspGWI | ACGGA | 1 cut(s) | 1398 |
| TspMI | CCCGGG | 1 cut(s) | 662 |
| TspRI | CASTG | 5 cut(s) | 39, 64, 1069, 1743, 1990 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2122, 2444 |
| VneI | GTGCAC | 2 cut(s) | 218, 474 |
| VpaK11BI | GGWCC | 2 cut(s) | 13, 908 |
| VspI | ATTAAT | 2 cut(s) | 2676, 2826 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2611 |
| XapI | RAATTY | 6 cut(s) | 320, 634, 683, 1162, 1406, 1881 |
| XbaI | TCTAGA | 1 cut(s) | 1918 |
| XceI | RCATGY | 3 cut(s) | 802, 813, 1543 |
| XmaI | CCCGGG | 1 cut(s) | 662 |
| XmaJI | CCTAGG | 1 cut(s) | 595 |
| XmiI | GTMKAC | 1 cut(s) | 897 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1332, 1704, 2552 |
| XspI | CTAG | 8 cut(s) | 572, 596, 695, 708, 1133, 1919, 2453, 2613 |