Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001845

Physical Location & Seq

Genomic Coordinates Reverse (-)

31666674 .. 31669091

Gene Structure 2418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33445.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGTCAAGACAGTGTACTTGTTTGGATTTCCCCCTGTGGAGTCTCCAGAAGCAGTGACAAAATTTCTGGAGGAGTATACTGGAGAAGGAACTGTTCTATCTGTGAATGTTCTTCCTCCAAAACGTAGAGGATCAAGATCATCTGCCAAAGTTCAATTCATAACTGCAGAATGTGCTGAAATAATACTTGCATTAGCCGATGATCAAAGACTGTGGTATGGAGAGTCTTATCTGAAAGCTCGCGAATGTAAGGGTGACATAGCACCAAGATCAACAGTCTTGGAGGAACTTGTGACACTTCACTTTGGATGCAAGATATCTGAGGAGAAGTTTTCGGTGCTTTGGACAAAATCAGACGTTTCTGTGACATTTGGAAAAGACCTGAATTATGTGCACTTAGCTTTCTCCTATGATTGTGTTGAATACAAGCTTGAGCTCCCATCTGACACTATTTGCCAGATTGAGCTGCATTGTCCATGTGATCAGTTTAGAAAGTTTCTTCTCATCCAGTTACGTGGTGCCCCTTGGATTTATAAGAAAGATGTAACTGTGCAAAATCACGGTGTTCGAGAAGTTGATTTTACTCCATCATGCTGCATTGGGCAATCCTCTTCTCTGTGCTTGGAACTTCCATTTGAGTGTTCGCTTCCTGATCTAAACAAGAGTTGTGTGCAGTATATAGAGAATGAGGGACAGTTTGGCCTGAAGGAAGGTAACACTTTCTCTGGAAGTTCAGCTCTTGGTCCTATTCTGGCTCCACCCCTCGGCATTAACTTTCCATACAAAATCCTGTTCAAGATAAATTCATTGGTTCAGCATGGTTGTATTCCGGGGCAAGCTCTTGATATCAATTTTTATCACCTAGTAGATCCTACTGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

295

Amino Acids

32.9

Weight (kDa)

5.27

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_RdRP1_2	PF26250	4 - 84	2.7e-14	RdRP1/2, RRM domain
PH_RDR2	PF24823	100 - 233	2.9e-26	RDR2 PH-like domain
RdRP_helical	PF26252	251 - 289	4.5e-06	RNA dependent RNA polymerase, helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13760 FvH4_4g33441 FvH4_4g33445
malus_domestica	MD13G1019400.v1.1 MD13G1041200.v1.1 MD16G1017600.v1.1
prunus_persica	Prupe.1G132100_v2.0.a1 Prupe.1G132200_v2.0.a1 Prupe.1G132200_v2.0.a1 Prupe.1G332600_v2.0.a1 Prupe.1G332600_v2.0.a1 Prupe.1G332600_v2.0.a1 Prupe.1G334500_v2.0.a1 Prupe.1G334500_v2.0.a1 Prupe.1G334500_v2.0.a1
pyrus_communis	pycom13g01650 pycom13g03550
rosa_chinensis	RchiOBHm_Chr2g0166231 RchiOBHm_Chr4g0442711 RchiOBHm_Chr4g0442751
rosa_laevigata	RLG00000005987 RLG00000005988 RLG00000005989 RLG00000021600
rosa_multiflora	Rmu_co8517261.1_g000001 Rmu_sc0018648.1_g000004 Rmu_sc0035717.1_g000001 Rmu_ssc0000204.1_g000023
rosa_roxburghii	Rroxscaffold_2G00085060 Rroxscaffold_5G00383520 Rroxscaffold_5G00383530 Rroxscaffold_5G00383540
rosa_rugosa	Rorug02G0521500 Rorug02G0521600
rosa_samantha	Rh2AG587500 Rh2BG599400 Rh2CG569900 Rh2DG609500 Rh4AG395000 Rh4AG395300 Rh4BG408000 Rh4CG423700 Rh4DG402000 Rh4DG402200
rosa_wichuraiana	Rw2G048970 Rw4G034140 Rw4G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
AccB1I	GGYRCC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	77
AccII	CGCG	1 cut(s)	243
AclWI	GGATC	2 cut(s)	139, 863
AcsI	RAATTY	2 cut(s)	62, 802
AcuI	CTGAAG	1 cut(s)	725
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	764
AgsI	TTSAA	3 cut(s)	155, 422, 796
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	7 cut(s)	239, 401, 430, 436, 466, 737, 839
AluI	AGCT	7 cut(s)	239, 401, 430, 436, 466, 737, 839
Alw21I	GWGCWC	2 cut(s)	396, 438
Alw26I	GTCTC	1 cut(s)	48
Alw44I	GTGCAC	1 cut(s)	392
AlwI	GGATC	2 cut(s)	139, 863
AoxI	GGCC	1 cut(s)	700
ApaLI	GTGCAC	1 cut(s)	392
ApeKI	GCWGC	2 cut(s)	466, 594
ApoI	RAATTY	2 cut(s)	62, 802
AspS9I	GGNCC	1 cut(s)	743
AsuC2I	CCSGG	1 cut(s)	831
AsuHPI	GGTGA	2 cut(s)	266, 851
AvaII	GGWCC	1 cut(s)	743
BaeGI	GKGCMC	2 cut(s)	396, 523
BanI	GGYRCC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	396, 438
BbvI	GCAGC	2 cut(s)	453, 581
BccI	CCATC	2 cut(s)	448, 595
BclI	TGATCA	2 cut(s)	202, 481
BcnI	CCSGG	1 cut(s)	831
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	863
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	2 cut(s)	467, 595
BlsI	GCNGC	2 cut(s)	468, 596
Bme1390I	CCNGG	1 cut(s)	831
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	2 cut(s)	520, 756
BmrFI	CCNGG	1 cut(s)	831
BmsI	GCATC	1 cut(s)	299
BpmI	CTGGAG	3 cut(s)	30, 89, 102
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	1 cut(s)	831
BsaAI	YACGTR	1 cut(s)	515
BsaBI	GATNNNNATC	1 cut(s)	136
BsaJI	CCNNGG	3 cut(s)	524, 763, 830
Bsc4I	CCNNNNNNNGG	1 cut(s)	764
Bse1I	ACTGG	2 cut(s)	85, 508
Bse8I	GATNNNNATC	1 cut(s)	136
BseDI	CCNNGG	3 cut(s)	524, 763, 830
BseGI	GGATG	2 cut(s)	314, 504
BseJI	GATNNNNATC	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	764
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	85, 508
BseRI	GAGGAG	2 cut(s)	86, 338
BseSI	GKGCMC	2 cut(s)	396, 523
BseXI	GCAGC	2 cut(s)	453, 581
BsgI	GTGCAG	1 cut(s)	692
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	702
BshNI	GGYRCC	1 cut(s)	518
BsiHKAI	GWGCWC	2 cut(s)	396, 438
BsiSI	CCGG	1 cut(s)	830
BslFI	GGGAC	1 cut(s)	705
BslI	CCNNNNNNNGG	1 cut(s)	764
BsmAI	GTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	705
BsnI	GGCC	1 cut(s)	702
Bsp1286I	GDGCHC	3 cut(s)	396, 438, 523
Bsp143I	GATC	7 cut(s)	131, 137, 202, 269, 481, 652, 868
Bsp68I	TCGCGA	1 cut(s)	243
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	520, 756
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	2 cut(s)	139, 863
BspT107I	GGYRCC	1 cut(s)	518
BsrI	ACTGG	2 cut(s)	85, 508
BssECI	CCNNGG	3 cut(s)	524, 763, 830
BssMI	GATC	7 cut(s)	131, 137, 202, 269, 481, 652, 868
BssNAI	GTATAC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	524
Bst1107I	GTATAC	1 cut(s)	78
Bst4CI	ACNGT	8 cut(s)	13, 94, 213, 277, 550, 563, 696, 877
Bst6I	CTCTTC	1 cut(s)	616
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	241, 837
BstDEI	CTNAG	2 cut(s)	321, 397
BstF5I	GGATG	2 cut(s)	314, 504
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	7 cut(s)	134, 140, 205, 272, 484, 655, 871
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	7 cut(s)	131, 137, 202, 269, 481, 652, 868
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	829
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	2 cut(s)	396, 523
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	453, 581
BstX2I	RGATCY	1 cut(s)	868
BstXI	CCANNNNNNTGG	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	868
BstZ17I	GTATAC	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	702
BtsCI	GGATG	2 cut(s)	314, 504
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	18, 60
BtuMI	TCGCGA	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	241, 837
Cfr13I	GGNCC	1 cut(s)	743
Csp6I	GTAC	1 cut(s)	16
CspCI	CAANNNNNGTGG	2 cut(s)	194, 229
CviAII	CATG	3 cut(s)	477, 591, 818
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	2 cut(s)	321, 397
DpnI	GATC	7 cut(s)	133, 139, 204, 271, 483, 654, 870
DpnII	GATC	7 cut(s)	131, 137, 202, 269, 481, 652, 868
Eam1104I	CTCTTC	1 cut(s)	616
EarI	CTCTTC	1 cut(s)	616
Ecl136II	GAGCTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	524
Eco24I	GRGCYC	1 cut(s)	438
Eco32I	GATATC	2 cut(s)	318, 847
Eco47I	GGWCC	1 cut(s)	743
Eco53kI	GAGCTC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	725
EcoICRI	GAGCTC	1 cut(s)	436
EcoRV	GATATC	2 cut(s)	318, 847
EcoT14I	CCWWGG	1 cut(s)	524
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	524
FaeI	CATG	3 cut(s)	480, 594, 821
FaqI	GGGAC	1 cut(s)	705
FatI	CATG	3 cut(s)	476, 590, 817
FbaI	TGATCA	2 cut(s)	202, 481
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	2 cut(s)	467, 595
FokI	GGATG	2 cut(s)	321, 491
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	2 cut(s)	467, 595
FspBI	CTAG	1 cut(s)	863
GluI	GCNGC	2 cut(s)	467, 595
GsuI	CTGGAG	3 cut(s)	30, 89, 102
HaeIII	GGCC	1 cut(s)	702
HapII	CCGG	1 cut(s)	830
Hin1II	CATG	3 cut(s)	480, 594, 821
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	2 cut(s)	41, 224
HpaII	CCGG	1 cut(s)	830
HphI	GGTGA	2 cut(s)	266, 851
Hpy166II	GTNNAC	3 cut(s)	16, 78, 394
Hpy188I	TCNGA	4 cut(s)	234, 322, 355, 445
Hpy8I	GTNNAC	3 cut(s)	16, 78, 394
HpyAV	CCTTC	3 cut(s)	80, 700, 704
HpyCH4III	ACNGT	8 cut(s)	13, 94, 213, 277, 550, 563, 696, 877
HpyCH4IV	ACGT	3 cut(s)	124, 357, 514
HpyCH4V	TGCA	8 cut(s)	167, 191, 312, 394, 469, 553, 597, 673
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	2 cut(s)	321, 397
HpySE526I	ACGT	3 cut(s)	124, 357, 514
Hsp92II	CATG	3 cut(s)	480, 594, 821
Ksp22I	TGATCA	2 cut(s)	202, 481
Kzo9I	GATC	7 cut(s)	131, 137, 202, 269, 481, 652, 868
LmnI	GCTCC	2 cut(s)	441, 760
Lsp1109I	GCAGC	2 cut(s)	453, 581
LweI	GCATC	1 cut(s)	299
MaeI	CTAG	1 cut(s)	863
MaeII	ACGT	3 cut(s)	124, 357, 514
MaeIII	GTNAC	7 cut(s)	55, 254, 292, 364, 510, 544, 713
MalI	GATC	7 cut(s)	133, 139, 204, 271, 483, 654, 870
MboI	GATC	7 cut(s)	131, 137, 202, 269, 481, 652, 868
MboII	GAAGA	3 cut(s)	104, 491, 603
MflI	RGATCY	1 cut(s)	868
MhlI	GDGCHC	3 cut(s)	396, 438, 523
MluCI	AATT	5 cut(s)	62, 155, 385, 802, 850
MlyI	GAGTC	2 cut(s)	50, 233
MnlI	CCTC	8 cut(s)	64, 122, 126, 277, 316, 619, 682, 773
MseI	TTAA	1 cut(s)	771
MslI	CAYNNNNRTG	1 cut(s)	637
MspI	CCGG	1 cut(s)	830
MspR9I	CCNGG	1 cut(s)	831
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	173
NciI	CCSGG	1 cut(s)	831
NdeII	GATC	7 cut(s)	131, 137, 202, 269, 481, 652, 868
NlaIII	CATG	3 cut(s)	480, 594, 821
NlaIV	GGNNCC	2 cut(s)	520, 756
NmeAIII	GCCGAG	1 cut(s)	744
NmuCI	GTSAC	4 cut(s)	55, 254, 292, 364
NruI	TCGCGA	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	468, 596
PleI	GAGTC	2 cut(s)	49, 232
PpsI	GAGTC	2 cut(s)	49, 232
Ppu21I	YACGTR	1 cut(s)	515
PsiI	TTATAA	1 cut(s)	534
Psp124BI	GAGCTC	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	520, 756
PspPI	GGNCC	1 cut(s)	743
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	868
RruI	TCGCGA	1 cut(s)	243
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	637
SacI	GAGCTC	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	771
SatI	GCNGC	2 cut(s)	467, 595
Sau3AI	GATC	7 cut(s)	131, 137, 202, 269, 481, 652, 868
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	2 cut(s)	50, 233
ScrFI	CCNGG	1 cut(s)	831
SduI	GDGCHC	3 cut(s)	396, 438, 523
SfaNI	GCATC	1 cut(s)	299
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	1 cut(s)	637
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	5 cut(s)	62, 155, 385, 802, 850
SspMI	CTAG	1 cut(s)	863
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	829
StyI	CCWWGG	1 cut(s)	524
TaaI	ACNGT	8 cut(s)	13, 94, 213, 277, 550, 563, 696, 877
TaiI	ACGT	3 cut(s)	127, 360, 517
TaqI	TCGA	1 cut(s)	568
TasI	AATT	5 cut(s)	62, 155, 385, 802, 850
TatI	WGTACW	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TscAI	CASTG	2 cut(s)	18, 60
TseFI	GTSAC	4 cut(s)	55, 254, 292, 364
TseI	GCWGC	2 cut(s)	466, 594
Tsp45I	GTSAC	4 cut(s)	55, 254, 292, 364
TspDTI	ATGAA	2 cut(s)	148, 795
TspRI	CASTG	2 cut(s)	18, 60
VneI	GTGCAC	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	2 cut(s)	62, 802
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.