FvH4_4g14244

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003406
Physical Location & Seq
Forward (+)
17839673 .. 17841985
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14244.t1

Sequence Viewer

Length: 423 bp
ATGTCATACCAGTTCAGTGATGTTGATGGATATTTTCTGCGTCTCTTACTCTCTACACCGAGAAGATCACACCCTTCAGTCCCTTCTCTCATCACACTTTCTGAGATATCAGAAGCCGAATGCGGAAATGATGATGAAGATTATGATGGTTCCTGCAAAGGGGAGCCTCAATTCATCGAATCTATGATTTACCAGAGAACAGAGGACGAACTCGTTGATGATGACGCTGGTGTGCAATTAACATTCAGCCTTCTTTCTAGCAAGGAGTTTATTTATTTCTCAGTGAAAGAGCGGCGTGAGCTTGAAGCCGGTGACGACGGCACTGGTAAAGGCGAGACAGGCAAAGGCGGTTCTGGTAAAGGTGAGACCGGCGGGATGACGACGGAGATGATAGAGCCCCGAGCTTTCGGCCAACAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.4

Weight (kDa)

4.29

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 292
AciI CCGC 4 cut(s) 123, 292, 348, 372
AcoI YGGCCR 1 cut(s) 409
AcuI CTGAAG 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 2 cut(s) 301, 404
AluI AGCT 2 cut(s) 301, 404
Alw26I GTCTC 3 cut(s) 47, 329, 359
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 1 cut(s) 409
AsuHPI GGTGA 2 cut(s) 323, 374
AvaI CYCGRG 1 cut(s) 399
BanII GRGCYC 1 cut(s) 399
BccI CCATC 2 cut(s) 20, 140
BceAI ACGGC 1 cut(s) 334
BcoDI GTCTC 3 cut(s) 47, 329, 359
BfaI CTAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 399
BmiI GGNNCC 2 cut(s) 151, 165
BsaI GGTCTC 1 cut(s) 359
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse118I RCCGGY 2 cut(s) 308, 368
Bse1I ACTGG 2 cut(s) 10, 328
BseGI GGATG 1 cut(s) 381
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 2 cut(s) 93, 294
BseNI ACTGG 2 cut(s) 10, 328
BshFI GGCC 1 cut(s) 411
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 2 cut(s) 309, 369
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 3 cut(s) 47, 329, 359
BsmBI CGTCTC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 1 cut(s) 411
Bso31I GGTCTC 1 cut(s) 359
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 1 cut(s) 65
BspACI CCGC 4 cut(s) 123, 292, 348, 372
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 2 cut(s) 94, 293
BspLI GGNNCC 2 cut(s) 151, 165
BspTNI GGTCTC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 292
BsrFI RCCGGY 2 cut(s) 308, 368
BsrI ACTGG 2 cut(s) 10, 328
BssAI RCCGGY 2 cut(s) 308, 368
BssMI GATC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 102, 280
BstF5I GGATG 1 cut(s) 381
BstKTI GATC 1 cut(s) 68
BstMAI GTCTC 3 cut(s) 47, 329, 359
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 2 cut(s) 298, 339
BsuRI GGCC 1 cut(s) 411
BtsCI GGATG 1 cut(s) 381
BtsIMutI CAGTG 3 cut(s) 22, 288, 321
Cfr10I RCCGGY 2 cut(s) 308, 368
CseI GACGC 2 cut(s) 29, 233
CviJI RGCY 8 cut(s) 116, 166, 249, 301, 308, 397, 404, 411
CviKI_1 RGCY 8 cut(s) 116, 166, 249, 301, 308, 397, 404, 411
DdeI CTNAG 2 cut(s) 102, 280
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 399
Eco31I GGTCTC 1 cut(s) 359
Eco32I GATATC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 399
EcoRV GATATC 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 399
Esp3I CGTCTC 1 cut(s) 47
FaiI YATR 4 cut(s) 7, 144, 185, 421
FaqI GGGAC 1 cut(s) 65
FauI CCCGC 1 cut(s) 365
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 1 cut(s) 388
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 293
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 293
HaeIII GGCC 1 cut(s) 411
HapII CCGG 2 cut(s) 309, 369
HgaI GACGC 2 cut(s) 29, 233
HinfI GANTC 1 cut(s) 179
HpaII CCGG 2 cut(s) 309, 369
HphI GGTGA 2 cut(s) 323, 374
Hpy188I TCNGA 2 cut(s) 103, 112
Hpy99I CGWCG 2 cut(s) 320, 385
HpyAV CCTTC 3 cut(s) 84, 93, 260
HpyCH4V TGCA 2 cut(s) 156, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 339
HpyF3I CTNAG 2 cut(s) 102, 280
Kzo9I GATC 1 cut(s) 65
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 9 cut(s) 23, 166, 206, 213, 309, 322, 324, 339, 382
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 311
MalI GATC 1 cut(s) 67
MbiI CCGCTC 1 cut(s) 292
MboI GATC 1 cut(s) 65
MboII GAAGA 2 cut(s) 75, 149
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 2 cut(s) 170, 236
MnlI CCTC 2 cut(s) 177, 196
MseI TTAA 1 cut(s) 239
MspI CCGG 2 cut(s) 309, 369
Mva1269I GAATGC 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 298, 339
NdeII GATC 1 cut(s) 65
NlaIV GGNNCC 2 cut(s) 151, 165
NmuCI GTSAC 1 cut(s) 311
PctI GAATGC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 151, 165
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 1 cut(s) 65
SduI GDGCHC 1 cut(s) 399
SetI ASST 3 cut(s) 303, 364, 406
Sse9I AATT 2 cut(s) 170, 236
SsiI CCGC 4 cut(s) 123, 292, 348, 372
SspMI CTAG 1 cut(s) 258
TaqI TCGA 1 cut(s) 177
TasI AATT 2 cut(s) 170, 236
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 3 cut(s) 22, 288, 328
TseFI GTSAC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 150, 163
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 3 cut(s) 22, 288, 328
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.