Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003406

Physical Location & Seq

Genomic Coordinates Reverse (-)

54593692 .. 54596009

Gene Structure 2318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00323670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTTGTCTTCCGGTCTTGACAAAGGTGAAGAGAGCAGAGGAGATTGTGAGCCAAATCAAATAGATCAGGTTCGGTATAAAGGAGGAAGTGGAGCGACACCGCAAATCTTGCGGAGGTTGAGGATCATCGATCAATTGGTTCCTCGTCTTGGTCAATTGGTTCGATATGGGGTTGGTCTCAATATAAGGGTTGGTGTTGCCGCCTTTATTACCTTACTAGTTCAAGAAGTTGAGATTCCTGGTCGGTTATGGGAGGGAAAGGAAGCTCTATTGTATTCAATTGCTGCACTTTCTGTGTCTTGTCATAAAGAAATTTCAACTGATGATCCTAATACTCCGAATGAAGTTTTGAGGGTAATGCTTCCACTCTCGTGTTTCGGGAAAGCAACTTTGGTCGGCAATGGTGCTAAAGCAGGTGATCAATGGATTGACTTAGCGGACGATGGTGAATCGTTGATTGGGCTATTAAGAAGACGCAGCGGGATTAGAGGACCCAAGTGGGGTGTTGGGATTGAGGATTGTGAATGTGTTTCCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ecm29

Protein Analysis

179

Amino Acids

19.37

Weight (kDa)

5.53

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25800 AT5G25800
fragaria_vesca	FvH4_2g15020 FvH4_2g15020 FvH4_4g14244
malus_domestica	MD05G1011300.v1.1 MD10G1011100.v1.1
prunus_persica	Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1
pyrus_communis	pycom05g00660 pycom10g00710
rosa_chinensis	RchiOBHm_Chr6g0277571
rosa_laevigata	RLG00000013291
rosa_multiflora	Rmu_co8201914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239400 Rroxscaffold_3G00248790 Rroxscaffold_4G00320900 Rroxscaffold_4G00323660 Rroxscaffold_4G00323670 Rroxscaffold_5G00362250 Rroxscaffold_6G00389120 Rroxscaffold_6G00389130 Rroxscaffold_6G00389140 Rroxscaffold_6G00394340 Rroxscaffold_6G00401850 Rroxscaffold_6G00404000 Rroxscaffold_6G00409440 Rroxscaffold_7G00191200
rosa_rugosa	Rorug06G0109700
rosa_samantha	Rh4CG232400 Rh6AG220200 Rh6BG224100 Rh6CG226400 Rh6DG217000
rosa_wichuraiana	Rw6G019280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	404
AciI	CCGC	5 cut(s)	101, 112, 201, 437, 480
AclWI	GGATC	2 cut(s)	131, 320
AcsI	RAATTY	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	149, 500
AgsI	TTSAA	3 cut(s)	224, 279, 318
AhlI	ACTAGT	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	4 cut(s)	374, 406, 441, 473
AleI	CACNNNNGTG	1 cut(s)	370
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	2 cut(s)	131, 320
ApeKI	GCWGC	2 cut(s)	284, 477
ApoI	RAATTY	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	3 cut(s)	38, 428, 458
AvaII	GGWCC	1 cut(s)	491
BauI	CACGAG	2 cut(s)	370, 535
BbsI	GAAGAC	1 cut(s)	478
BbvI	GCAGC	2 cut(s)	271, 489
BccI	CCATC	1 cut(s)	437
BciT130I	CCWGG	1 cut(s)	240
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	182
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	404
BisI	GCNGC	3 cut(s)	201, 285, 478
BlsI	GCNGC	3 cut(s)	202, 286, 479
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	2 cut(s)	141, 493
BmrFI	CCNGG	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	478
Bsa29I	ATCGAT	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 500
Bse3DI	GCAATG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	149, 500
BseMI	GCAATG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	271, 489
BsgI	GTGCAG	1 cut(s)	270
BshVI	ATCGAT	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	149, 500
BsmAI	GTCTC	1 cut(s)	182
Bso31I	GGTCTC	1 cut(s)	182
Bsp143I	GATC	5 cut(s)	64, 123, 130, 325, 418
BspACI	CCGC	5 cut(s)	101, 112, 201, 437, 480
BspDI	ATCGAT	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	141, 493
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	2 cut(s)	131, 320
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	406
BssMI	GATC	5 cut(s)	64, 123, 130, 325, 418
BssSI	CACGAG	2 cut(s)	370, 535
Bst2BI	CACGAG	2 cut(s)	370, 535
Bst2UI	CCWGG	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	433
BstKTI	GATC	5 cut(s)	67, 126, 133, 328, 421
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	5 cut(s)	64, 123, 130, 325, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	271, 489
BstV2I	GAAGAC	1 cut(s)	478
Bsu15I	ATCGAT	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	491
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	1 cut(s)	483
CviJI	RGCY	3 cut(s)	52, 266, 463
CviKI_1	RGCY	3 cut(s)	52, 266, 463
DdeI	CTNAG	1 cut(s)	433
DpnI	GATC	5 cut(s)	66, 125, 132, 327, 420
DpnII	GATC	5 cut(s)	64, 123, 130, 325, 418
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	491
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	238
FaiI	YATR	5 cut(s)	78, 168, 185, 250, 306
FauI	CCCGC	1 cut(s)	473
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	201, 285, 478
Fsp4HI	GCNGC	3 cut(s)	201, 285, 478
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	3 cut(s)	201, 285, 478
HapII	CCGG	1 cut(s)	12
HgaI	GACGC	1 cut(s)	483
HinfI	GANTC	2 cut(s)	235, 449
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	3 cut(s)	38, 428, 458
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	4 cut(s)	17, 224, 379, 537
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	5 cut(s)	64, 123, 130, 325, 418
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	5 cut(s)	25, 53, 225, 252, 399
Lsp1109I	GCAGC	2 cut(s)	271, 489
MaeI	CTAG	1 cut(s)	218
MalI	GATC	5 cut(s)	66, 125, 132, 327, 420
MboI	GATC	5 cut(s)	64, 123, 130, 325, 418
MboII	GAAGA	2 cut(s)	41, 483
MfeI	CAATTG	3 cut(s)	134, 155, 279
MluCI	AATT	4 cut(s)	134, 155, 279, 312
MnlI	CCTC	9 cut(s)	32, 77, 108, 114, 153, 247, 345, 482, 508
MseI	TTAA	1 cut(s)	467
MslI	CAYNNNNRTG	1 cut(s)	370
MspA1I	CMGCKG	1 cut(s)	480
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	3 cut(s)	134, 155, 279
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	5 cut(s)	64, 123, 130, 325, 418
NlaIV	GGNNCC	2 cut(s)	141, 493
OliI	CACNNNNGTG	1 cut(s)	370
PaqCI	CACCTGC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	235, 449
PkrI	GCNGC	3 cut(s)	202, 286, 479
PpuMI	RGGWCCY	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	141, 493
PspPI	GGNCC	1 cut(s)	491
PspPPI	RGGWCCY	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	467
SatI	GCNGC	3 cut(s)	201, 285, 478
Sau3AI	GATC	5 cut(s)	64, 123, 130, 325, 418
Sau96I	GGNCC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	6 cut(s)	28, 72, 119, 215, 268, 418
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	1 cut(s)	370
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	4 cut(s)	134, 155, 279, 312
SsiI	CCGC	5 cut(s)	101, 112, 201, 437, 480
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	238
TaqI	TCGA	2 cut(s)	129, 163
TasI	AATT	4 cut(s)	134, 155, 279, 312
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	235, 449
Tru1I	TTAA	1 cut(s)	467
Tru9I	TTAA	1 cut(s)	467
TseI	GCWGC	2 cut(s)	284, 477
TspDTI	ATGAA	1 cut(s)	357
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	1 cut(s)	312
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.