Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003406

Physical Location & Seq

Genomic Coordinates Forward (+)

47112904 .. 47114265

Gene Structure 1362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG232400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAAAACCACTCAAATTGAAAACTGTATCCAAGCGCCAAAAACCACAGTCGCCCACAGTATTTACAGACTTGGGCAGACAAATTTACCCTTGAAATTGCCCTATAAAATCACCACTGAAGACGCCGAGAAGATCACGTACACCTTCCTCGTCTCTTCTCCTTTCTGTTTCACAGCCCCGTCTCTTCTCACTGGTTCGAATATGGTGATAGTTAGTCATGAGATATCCGAAGCTGAATGCGGAGATGAAGATGAAGATAAAGATGGTGCCGGTAGCGGAGAGCCTCAATTAATCGAGTCTATGATTCACCAGAGTTTAAGTGTGGATCCTAAAGGTGGTGGAGCTTGGAGGAGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

12.94

Weight (kDa)

4.78

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25800 AT5G25800
fragaria_vesca	FvH4_2g15020 FvH4_2g15020 FvH4_4g14244
malus_domestica	MD05G1011300.v1.1 MD10G1011100.v1.1
prunus_persica	Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1
pyrus_communis	pycom05g00660 pycom10g00710
rosa_chinensis	RchiOBHm_Chr6g0277571
rosa_laevigata	RLG00000013291
rosa_multiflora	Rmu_co8201914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239400 Rroxscaffold_3G00248790 Rroxscaffold_4G00320900 Rroxscaffold_4G00323660 Rroxscaffold_4G00323670 Rroxscaffold_5G00362250 Rroxscaffold_6G00389120 Rroxscaffold_6G00389130 Rroxscaffold_6G00389140 Rroxscaffold_6G00394340 Rroxscaffold_6G00401850 Rroxscaffold_6G00404000 Rroxscaffold_6G00409440 Rroxscaffold_7G00191200
rosa_rugosa	Rorug06G0109700
rosa_samantha	Rh4CG232400 Rh6AG220200 Rh6BG224100 Rh6CG226400 Rh6DG217000
rosa_wichuraiana	Rw6G019280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AciI	CCGC	2 cut(s)	240, 276
AclWI	GGATC	2 cut(s)	320, 333
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	20, 94
AluBI	AGCT	2 cut(s)	233, 344
AluI	AGCT	2 cut(s)	233, 344
Alw26I	GTCTC	2 cut(s)	157, 186
AlwI	GGATC	2 cut(s)	320, 333
ApoI	RAATTY	1 cut(s)	82
AseI	ATTAAT	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	37
AsuHPI	GGTGA	3 cut(s)	103, 217, 299
AsuII	TTCGAA	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	266
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BbsI	GAAGAC	1 cut(s)	126
BccI	CCATC	1 cut(s)	257
BciVI	GTATCC	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	157, 186
BfoI	RGCGCY	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	268, 327
BpiI	GAAGAC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	196
BshNI	GGYRCC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	2 cut(s)	157, 186
BsmBI	CGTCTC	2 cut(s)	157, 186
BsmI	GAATGC	1 cut(s)	242
Bsp119I	TTCGAA	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	132, 325
BspACI	CCGC	2 cut(s)	240, 276
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	268, 327
BspPI	GGATC	2 cut(s)	320, 333
BspT104I	TTCGAA	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	269
BssMI	GATC	2 cut(s)	132, 325
BssNI	GRCGYC	1 cut(s)	123
Bst4CI	ACNGT	3 cut(s)	26, 49, 59
Bst6I	CTCTTC	2 cut(s)	160, 189
BstACI	GRCGYC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	138
BstBI	TTCGAA	1 cut(s)	197
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	2 cut(s)	135, 328
BstMAI	GTCTC	2 cut(s)	157, 186
BstMBI	GATC	2 cut(s)	132, 325
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	114, 189
CciI	TCATGA	1 cut(s)	217
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	269
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	139
CspCI	CAANNNNNGTGG	1 cut(s)	33
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	4 cut(s)	176, 233, 283, 344
CviKI_1	RGCY	4 cut(s)	176, 233, 283, 344
CviQI	GTAC	1 cut(s)	139
DpnI	GATC	2 cut(s)	134, 327
DpnII	GATC	2 cut(s)	132, 325
Eam1104I	CTCTTC	2 cut(s)	160, 189
EarI	CTCTTC	2 cut(s)	160, 189
Eco32I	GATATC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	138
EcoRV	GATATC	1 cut(s)	225
Esp3I	CGTCTC	2 cut(s)	157, 186
FaeI	CATG	1 cut(s)	221
FaiI	YATR	5 cut(s)	105, 203, 219, 302, 356
FatI	CATG	1 cut(s)	217
GlaI	GCGC	1 cut(s)	36
HaeII	RGCGCY	1 cut(s)	38
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	221
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	2 cut(s)	296, 304
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	3 cut(s)	103, 217, 299
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	3 cut(s)	26, 49, 59
HpyCH4IV	ACGT	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	221
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	132, 325
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	3 cut(s)	177, 283, 323
MaeII	ACGT	1 cut(s)	137
MalI	GATC	2 cut(s)	134, 327
MboI	GATC	2 cut(s)	132, 325
MboII	GAAGA	6 cut(s)	131, 142, 147, 176, 260, 266
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	4 cut(s)	15, 82, 95, 287
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	3 cut(s)	158, 294, 342
MseI	TTAA	2 cut(s)	290, 317
MspI	CCGG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	242
NdeII	GATC	2 cut(s)	132, 325
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	2 cut(s)	268, 327
NmeAIII	GCCGAG	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	197
PagI	TCATGA	1 cut(s)	217
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Ppu21I	YACGTR	1 cut(s)	138
PshBI	ATTAAT	1 cut(s)	290
PspN4I	GGNNCC	2 cut(s)	268, 327
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	290, 317
Sau3AI	GATC	2 cut(s)	132, 325
SchI	GAGTC	1 cut(s)	305
SetI	ASST	5 cut(s)	140, 146, 235, 337, 346
SfuI	TTCGAA	1 cut(s)	197
Sse9I	AATT	4 cut(s)	15, 82, 95, 287
SsiI	CCGC	2 cut(s)	240, 276
TaaI	ACNGT	3 cut(s)	26, 49, 59
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	197, 294
TasI	AATT	4 cut(s)	15, 82, 95, 287
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	2 cut(s)	290, 317
Tru9I	TTAA	2 cut(s)	290, 317
TscAI	CASTG	2 cut(s)	121, 196
TspDTI	ATGAA	3 cut(s)	17, 261, 267
TspRI	CASTG	2 cut(s)	121, 196
VspI	ATTAAT	1 cut(s)	290
XapI	RAATTY	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.