Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003406

Physical Location & Seq

Genomic Coordinates Forward (+)

2498091 .. 2499094

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCGAGCACTTCCAACTATCTTTTGAATCGATCGGGCGAGTTTATTGGTTACCTTGATTTACAAGATCAATGCTGCCGTATCATATCTCGTGCTTCGAAAACTTTTAAAAAGGTACAACAACTAGTGACGTGGGTGCTTGCTGATGGATTCATGCCGTCGTGGGTTTTTGTAAAGAACAAGCCCCTCATTCCCAAAGTAGTTATGCTTTATGTTCCAGGCCTAGATGCAGCTCTCTACTTATCACGGCATCGACTACTTAAGGGTCTCGAAAAATGTTGTGGAAAACCAAGGCCTGTTTTAGCACTCGGCTATATATCACATGAAAATCGACGATTGATGCGCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

116

Amino Acids

13.26

Weight (kDa)

9.92

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25800 AT5G25800
fragaria_vesca	FvH4_2g15020 FvH4_2g15020 FvH4_4g14244
malus_domestica	MD05G1011300.v1.1 MD10G1011100.v1.1
prunus_persica	Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1
pyrus_communis	pycom05g00660 pycom10g00710
rosa_chinensis	RchiOBHm_Chr6g0277571
rosa_laevigata	RLG00000013291
rosa_multiflora	Rmu_co8201914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239400 Rroxscaffold_3G00248790 Rroxscaffold_4G00320900 Rroxscaffold_4G00323660 Rroxscaffold_4G00323670 Rroxscaffold_5G00362250 Rroxscaffold_6G00389120 Rroxscaffold_6G00389130 Rroxscaffold_6G00389140 Rroxscaffold_6G00394340 Rroxscaffold_6G00401850 Rroxscaffold_6G00404000 Rroxscaffold_6G00409440 Rroxscaffold_7G00191200
rosa_rugosa	Rorug06G0109700
rosa_samantha	Rh4CG232400 Rh6AG220200 Rh6BG224100 Rh6CG226400 Rh6DG217000
rosa_wichuraiana	Rw6G019280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	117
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	28
AhlI	ACTAGT	1 cut(s)	124
AjiI	CACGTC	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	272
AoxI	GGCC	2 cut(s)	220, 293
ApeKI	GCWGC	2 cut(s)	75, 230
AspLEI	GCGC	1 cut(s)	345
AsuII	TTCGAA	1 cut(s)	98
BauI	CACGAG	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	62, 242
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	3 cut(s)	63, 142, 263
BciT130I	CCWGG	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	272
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	2 cut(s)	125, 224
BfrI	CTTAAG	1 cut(s)	260
BisI	GCNGC	2 cut(s)	76, 231
BlsI	GCNGC	2 cut(s)	77, 232
Bme1390I	CCNGG	1 cut(s)	219
BmgBI	CACGTC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	3 cut(s)	217, 259, 330
Bpu14I	TTCGAA	1 cut(s)	98
Bsa29I	ATCGAT	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	219
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	62, 242
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	222, 295
BshVI	ATCGAT	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	222, 295
Bso31I	GGTCTC	1 cut(s)	272
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	32, 67
BspANI	GGCC	2 cut(s)	222, 295
BspDI	ATCGAT	1 cut(s)	31
BspT104I	TTCGAA	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	2 cut(s)	32, 67
BssSI	CACGAG	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	219
BstAFI	CTTAAG	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	7, 141
BstEII	GGTNACC	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	2 cut(s)	35, 70
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	2 cut(s)	32, 67
BstMCI	CGRYCG	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	219
BstPI	GGTNACC	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	62, 242
Bsu15I	ATCGAT	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	222, 295
BsuTUI	ATCGAT	1 cut(s)	31
BtrI	CACGTC	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	7, 141
CfoI	GCGC	1 cut(s)	345
ClaI	ATCGAT	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	2 cut(s)	154, 323
CviJI	RGCY	5 cut(s)	184, 222, 233, 295, 312
CviKI_1	RGCY	5 cut(s)	184, 222, 233, 295, 312
CviQI	GTAC	1 cut(s)	116
DpnI	GATC	2 cut(s)	34, 69
DpnII	GATC	2 cut(s)	32, 67
DraI	TTTAAA	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	290
Eco147I	AGGCCT	2 cut(s)	222, 295
Eco31I	GGTCTC	1 cut(s)	272
Eco91I	GGTNACC	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	2 cut(s)	157, 326
FaiI	YATR	7 cut(s)	86, 155, 206, 213, 315, 317, 324
FatI	CATG	2 cut(s)	153, 322
Fnu4HI	GCNGC	2 cut(s)	76, 231
Fsp4HI	GCNGC	2 cut(s)	76, 231
FspBI	CTAG	2 cut(s)	125, 224
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	2 cut(s)	76, 231
HaeIII	GGCC	2 cut(s)	222, 295
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	2 cut(s)	157, 326
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	28, 150
Hpy188III	TCNNGA	1 cut(s)	269
Hpy99I	CGWCG	2 cut(s)	163, 336
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	157, 326
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	32, 67
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	3 cut(s)	204, 231, 309
Lsp1109I	GCAGC	2 cut(s)	62, 242
LweI	GCATC	3 cut(s)	217, 259, 330
MaeI	CTAG	2 cut(s)	125, 224
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	50, 127
MalI	GATC	2 cut(s)	34, 69
MboI	GATC	2 cut(s)	32, 67
MhlI	GDGCHC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	1 cut(s)	197
MseI	TTAA	2 cut(s)	108, 261
MspCI	CTTAAG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
NdeII	GATC	2 cut(s)	32, 67
NlaIII	CATG	2 cut(s)	157, 326
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	98
PceI	AGGCCT	2 cut(s)	222, 295
PfeI	GAWTC	2 cut(s)	28, 150
PkrI	GCNGC	2 cut(s)	77, 232
Ple19I	CGATCG	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	217
PspEI	GGTNACC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	217
PvuI	CGATCG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	108, 261
SatI	GCNGC	2 cut(s)	76, 231
Sau3AI	GATC	2 cut(s)	32, 67
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	4 cut(s)	57, 117, 134, 235
SfaNI	GCATC	3 cut(s)	217, 259, 330
SfuI	TTCGAA	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	124
SseBI	AGGCCT	2 cut(s)	222, 295
SspMI	CTAG	2 cut(s)	125, 224
StuI	AGGCCT	2 cut(s)	222, 295
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	290
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	5 cut(s)	31, 98, 253, 270, 331
TfiI	GAWTC	2 cut(s)	28, 150
Tru1I	TTAA	2 cut(s)	108, 261
Tru9I	TTAA	2 cut(s)	108, 261
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	75, 230
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	142, 339
Vha464I	CTTAAG	1 cut(s)	260
XspI	CTAG	2 cut(s)	125, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.