Rroxscaffold_3G00248790

GTP-binding protein TypA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003406
Physical Location & Seq
Forward (+)
42157770 .. 42158416
647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248790.1

Sequence Viewer

Length: 456 bp
ATGCGGTGGTTGTCCTTCTCTATTATAGTTAACTGCCTTGCCATTCTTCCCATACCACAGGTGGCTATATTAGTTGGCTTTTACCAAATGGGAGGCTCATCGGGCTTTGAAGTTTCTATTAAAAGAACAACGCTCAACGCTTCTCTTACCCTCCAGATACGCCAAGGGTTTGTCAAATCTACCTATCTACCACTTTACGAGGAGATGTGCGATGAAGTTGAGAATCTGGTATTTGATCTTTTTGCAAATCTCGGTGCTACGGAGGAGCAGCTGGATTTTCCTGTACTATATGCTTCTGCTAAAGAAGGATGGGCCTTGGCTACTTTCACTAAAGAAGCCCCTGTGATAGTTTTGATTGATATCGACGAAGGGGACCTGAAAGGTGATCAATGGATTGACCTGGCGGACGATGGTGAATCGTTGATTGGGCTGTTAAGAAGACGCAGCAGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

151

Amino Acids

16.85

Weight (kDa)

4.4

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 4, 404
AfaI GTAC 1 cut(s) 285
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 1 cut(s) 399
AjuI GAANNNNNNNTTGG 2 cut(s) 408, 440
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 2 cut(s) 268, 444
AspS9I GGNCC 2 cut(s) 312, 373
AsuHPI GGTGA 2 cut(s) 395, 425
AvaII GGWCC 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 445
BbvI GCAGC 1 cut(s) 280
BccI CCATC 2 cut(s) 303, 404
BciT130I CCWGG 1 cut(s) 401
BclI TGATCA 1 cut(s) 385
BisI GCNGC 2 cut(s) 269, 445
BlsI GCNGC 2 cut(s) 270, 446
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 312, 373
BmiI GGNNCC 1 cut(s) 374
BmrFI CCNGG 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 445
BpmI CTGGAG 1 cut(s) 137
BsaBI GATNNNNATC 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 163, 315
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 2 cut(s) 163, 315
BseGI GGATG 1 cut(s) 314
BseJI GATNNNNATC 1 cut(s) 359
BseRI GAGGAG 2 cut(s) 215, 278
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 1 cut(s) 314
BslFI GGGAC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 1 cut(s) 314
Bsp143I GATC 2 cut(s) 235, 385
BspACI CCGC 2 cut(s) 4, 404
BspANI GGCC 1 cut(s) 314
BspLI GGNNCC 1 cut(s) 374
BssECI CCNNGG 2 cut(s) 163, 315
BssMI GATC 2 cut(s) 235, 385
BssT1I CCWWGG 2 cut(s) 163, 315
Bst2UI CCWGG 1 cut(s) 401
BstF5I GGATG 1 cut(s) 314
BstKTI GATC 2 cut(s) 238, 388
BstMBI GATC 2 cut(s) 235, 385
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 445
BsuRI GGCC 1 cut(s) 314
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 1 cut(s) 314
Cfr13I GGNCC 2 cut(s) 312, 373
CseI GACGC 1 cut(s) 450
Csp6I GTAC 1 cut(s) 284
CviJI RGCY 9 cut(s) 65, 78, 96, 105, 271, 314, 320, 338, 430
CviKI_1 RGCY 9 cut(s) 65, 78, 96, 105, 271, 314, 320, 338, 430
CviQI GTAC 1 cut(s) 284
DpnI GATC 2 cut(s) 237, 387
DpnII GATC 2 cut(s) 235, 385
EciI GGCGGA 1 cut(s) 419
Eco130I CCWWGG 2 cut(s) 163, 315
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 373
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 399
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 2 cut(s) 163, 315
ErhI CCWWGG 2 cut(s) 163, 315
FaiI YATR 5 cut(s) 26, 53, 68, 289, 291
FaqI GGGAC 1 cut(s) 386
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 269, 445
FokI GGATG 1 cut(s) 321
Fsp4HI GCNGC 2 cut(s) 269, 445
GluI GCNGC 2 cut(s) 269, 445
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 1 cut(s) 314
HgaI GACGC 1 cut(s) 450
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 2 cut(s) 223, 416
HpaI GTTAAC 1 cut(s) 31
HphI GGTGA 2 cut(s) 395, 425
Hpy166II GTNNAC 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 3 cut(s) 25, 299, 362
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 385
KspAI GTTAAC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 235, 385
LmnI GCTCC 1 cut(s) 265
Lsp1109I GCAGC 1 cut(s) 280
MalI GATC 2 cut(s) 237, 387
MboI GATC 2 cut(s) 235, 385
MboII GAAGA 2 cut(s) 38, 450
MluCI AATT 1 cut(s) 451
MnlI CCTC 4 cut(s) 86, 161, 193, 256
MseI TTAA 3 cut(s) 30, 120, 434
MspA1I CMGCKG 1 cut(s) 271
MspR9I CCNGG 1 cut(s) 401
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 2 cut(s) 235, 385
NlaIV GGNNCC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 223, 416
PkrI GCNGC 2 cut(s) 270, 446
PpuMI RGGWCCY 1 cut(s) 373
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 374
PspPI GGNCC 2 cut(s) 312, 373
PspPPI RGGWCCY 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SaqAI TTAA 3 cut(s) 30, 120, 434
SatI GCNGC 2 cut(s) 269, 445
Sau3AI GATC 2 cut(s) 235, 385
Sau96I GGNCC 2 cut(s) 312, 373
ScrFI CCNGG 1 cut(s) 401
SetI ASST 6 cut(s) 63, 185, 273, 378, 385, 402
SinI GGWCC 1 cut(s) 373
Sse9I AATT 1 cut(s) 451
SsiI CCGC 2 cut(s) 4, 404
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 2 cut(s) 163, 315
TaqI TCGA 1 cut(s) 363
TasI AATT 1 cut(s) 451
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 2 cut(s) 223, 416
Tru1I TTAA 3 cut(s) 30, 120, 434
Tru9I TTAA 3 cut(s) 30, 120, 434
TseI GCWGC 2 cut(s) 268, 444
TspDTI ATGAA 1 cut(s) 228
TspGWI ACGGA 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 373
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.